Wall clock time and date at job start Wed Apr 1 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47288 * 2 1 4 4 C 1.52995 * 109.47291 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47061 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47181 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46892 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47432 * 55.00200 * 7 6 5 9 9 F 1.39901 * 109.47128 * 294.99721 * 7 6 5 10 10 C 1.50704 * 109.46644 * 174.99841 * 7 6 5 11 11 O 1.21281 * 120.00158 * 45.00598 * 10 7 6 12 12 N 1.34774 * 120.00156 * 224.99740 * 10 7 6 13 13 C 1.44972 * 117.33554 * 357.22236 * 12 10 7 14 14 C 1.51962 * 111.93241 * 203.78040 * 13 12 10 15 15 O 1.41319 * 111.60614 * 319.68390 * 14 13 12 16 16 C 1.40652 * 118.31740 * 56.94181 * 15 14 13 17 17 H 1.09001 * 108.83807 * 188.22348 * 16 15 14 18 18 C 1.53914 * 110.41750 * 67.97932 * 16 15 14 19 19 N 1.46773 * 107.69976 * 221.46084 * 18 16 15 20 20 C 1.36928 * 125.36644 * 178.78261 * 19 18 16 21 21 H 1.07998 * 120.00744 * 179.97438 * 20 19 18 22 22 C 1.38824 * 119.99794 * 359.97330 * 20 19 18 23 23 N 1.31615 * 119.99918 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99865 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47061 * 90.00252 * 24 22 20 26 26 H 1.48503 * 109.46897 * 210.00088 * 24 22 20 27 27 H 1.48502 * 109.47161 * 329.99580 * 24 22 20 28 28 C 1.46875 * 109.27182 * 358.75667 * 19 18 16 29 29 C 1.44545 * 117.34123 * 177.24384 * 12 10 7 30 30 H 1.08996 * 109.63873 * 285.94695 * 29 12 10 31 31 H 1.09005 * 109.47041 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47230 * 299.99686 * 1 2 3 33 33 H 1.08989 * 109.47463 * 59.99934 * 1 2 3 34 34 H 1.09001 * 109.47289 * 240.00036 * 2 1 3 35 35 H 1.09005 * 109.47753 * 120.00036 * 2 1 3 36 36 H 1.09001 * 109.46927 * 59.99814 * 3 2 1 37 37 H 1.09002 * 109.47151 * 300.00324 * 3 2 1 38 38 H 1.08995 * 109.47525 * 60.00311 * 4 3 2 39 39 H 1.08999 * 109.47366 * 299.99399 * 4 3 2 40 40 H 1.09000 * 109.47370 * 59.99925 * 5 4 3 41 41 H 1.09002 * 109.47282 * 299.99873 * 5 4 3 42 42 H 1.09000 * 109.46974 * 59.99751 * 6 5 4 43 43 H 1.09002 * 109.46966 * 300.00136 * 6 5 4 44 44 H 1.08996 * 108.98990 * 324.41737 * 13 12 10 45 45 H 1.09004 * 108.98565 * 83.23394 * 13 12 10 46 46 H 1.08996 * 109.05460 * 80.23758 * 14 13 12 47 47 H 1.08999 * 109.04985 * 199.14005 * 14 13 12 48 48 H 1.09001 * 109.82463 * 101.89185 * 18 16 15 49 49 H 1.08996 * 109.82101 * 341.02886 * 18 16 15 50 50 H 0.97002 * 120.00098 * 179.97438 * 23 22 20 51 51 H 1.09008 * 110.06453 * 137.03158 * 28 19 18 52 52 H 1.08993 * 110.07103 * 258.49614 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.6100 2.8851 -0.0013 7 6 6.1199 4.3276 -0.0026 8 1 5.6853 4.8674 0.8387 9 9 5.7498 4.9520 -1.1986 10 6 7.6218 4.3295 0.1213 11 8 8.2863 3.5657 -0.5465 12 7 8.2266 5.1800 0.9741 13 6 7.3820 6.1098 1.6979 14 6 8.1495 7.3417 2.1477 15 8 9.4422 7.0089 2.6117 16 6 10.3052 6.3170 1.7430 17 1 11.1930 6.0128 2.2974 18 6 10.7178 7.2184 0.5656 19 7 10.6898 6.4011 -0.6532 20 6 10.9730 6.8504 -1.9153 21 1 10.9259 6.1711 -2.7537 22 6 11.3205 8.1792 -2.1174 23 7 11.3773 9.0072 -1.0959 24 14 11.7060 8.7922 -3.8393 25 1 10.4591 9.2792 -4.4821 26 1 12.6887 9.9028 -3.7608 27 1 12.2768 7.6822 -4.6438 28 6 10.3109 5.0253 -0.3058 29 6 9.6645 5.0912 1.0921 30 1 9.9310 4.2006 1.6613 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 3.9329 0.9289 -0.8908 39 1 3.9337 0.9286 0.8891 40 1 3.7170 3.3992 0.8887 41 1 3.7162 3.3986 -0.8913 42 1 5.9733 2.3708 -0.8910 43 1 5.9733 2.3716 0.8889 44 1 6.5608 6.4197 1.0517 45 1 6.9729 5.6083 2.5750 46 1 8.2392 8.0313 1.3084 47 1 7.5982 7.8307 2.9509 48 1 11.7244 7.6031 0.7297 49 1 10.0163 8.0472 0.4711 50 1 11.6205 9.9355 -1.2370 51 1 9.5944 4.6401 -1.0314 52 1 11.1954 4.3889 -0.2801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218976066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:07 Heat of formation + Delta-G solvation = -123.173398 kcal Electronic energy + Delta-G solvation = -31638.793281 eV Core-core repulsion = 27359.718039 eV Total energy + Delta-G solvation = -4279.075242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.98768 -42.19559 -39.87031 -37.71767 -37.47490 -36.32129 -34.97228 -34.31864 -31.83023 -31.43675 -29.62590 -29.30836 -27.58276 -26.46050 -24.85786 -24.27334 -22.68562 -21.93866 -21.80296 -21.40928 -20.05196 -19.30042 -18.64639 -18.36736 -17.63178 -17.19093 -17.07925 -16.70608 -16.48057 -16.15241 -15.95534 -15.81732 -15.62798 -15.25295 -15.16330 -14.73472 -14.47797 -14.21043 -14.03688 -13.93628 -13.86498 -13.59936 -13.40079 -13.16677 -13.03040 -12.90816 -12.84847 -12.57996 -12.45885 -12.28097 -12.21249 -12.15157 -11.97201 -11.89221 -11.76467 -11.73903 -11.56623 -11.31251 -11.30770 -10.88518 -10.78184 -10.32028 -9.66480 -8.93467 -7.91725 -5.27772 1.19747 1.39468 1.41498 1.50698 1.65256 2.42556 2.71933 3.00413 3.25739 3.40105 3.47264 3.59531 3.67252 3.68083 3.80066 3.86116 4.00455 4.06361 4.09654 4.17051 4.19663 4.34063 4.35027 4.39222 4.44903 4.51747 4.61333 4.65222 4.67605 4.81002 4.82782 4.92413 4.94991 4.96507 4.97844 5.03630 5.11377 5.17730 5.27060 5.29339 5.35536 5.41772 5.43930 5.51645 5.52564 5.56349 5.61186 6.05149 6.12742 6.37101 6.87566 7.04402 7.69852 8.31104 9.17251 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.002578 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.080481 B =10859.664850 C =11813.990197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.129 4.129 7 C 0.081 3.919 8 H 0.143 0.857 9 F -0.206 7.206 10 C 0.477 3.523 11 O -0.546 6.546 12 N -0.583 5.583 13 C 0.065 3.935 14 C 0.051 3.949 15 O -0.368 6.368 16 C 0.086 3.914 17 H 0.131 0.869 18 C 0.162 3.838 19 N -0.619 5.619 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.061 4.061 23 N -0.946 5.946 24 Si 0.978 3.022 25 H -0.286 1.286 26 H -0.287 1.287 27 H -0.273 1.273 28 C 0.106 3.894 29 C 0.119 3.881 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.025 0.975 47 H 0.152 0.848 48 H 0.015 0.985 49 H 0.024 0.976 50 H 0.249 0.751 51 H 0.067 0.933 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.396 -12.965 11.213 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.167 4.167 7 C 0.042 3.958 8 H 0.160 0.840 9 F -0.187 7.187 10 C 0.264 3.736 11 O -0.424 6.424 12 N -0.315 5.315 13 C -0.056 4.056 14 C -0.026 4.026 15 O -0.285 6.285 16 C 0.026 3.974 17 H 0.148 0.852 18 C 0.037 3.963 19 N -0.347 5.347 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.255 4.255 23 N -0.595 5.595 24 Si 0.806 3.194 25 H -0.212 1.212 26 H -0.213 1.213 27 H -0.198 1.198 28 C -0.020 4.020 29 C 0.014 3.986 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.136 0.864 46 H 0.043 0.957 47 H 0.170 0.830 48 H 0.033 0.967 49 H 0.042 0.958 50 H 0.058 0.942 51 H 0.085 0.915 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -19.915 -13.081 10.971 26.231 hybrid contribution 0.793 0.734 -1.785 2.087 sum -19.122 -12.347 9.186 24.545 Atomic orbital electron populations 1.21784 0.95597 1.01813 1.01908 1.21552 0.96149 0.96846 1.01949 1.21601 0.94754 0.96923 1.02277 1.21560 0.95820 0.95835 1.02250 1.21575 0.92091 0.98167 1.03297 1.22046 0.97956 0.92048 1.04649 1.22042 0.89643 0.97996 0.86134 0.83998 1.92867 1.91838 1.84398 1.49623 1.21746 0.91904 0.80706 0.79271 1.90608 1.66465 1.41269 1.44098 1.46851 1.06385 1.35419 1.42888 1.22129 0.93613 0.91442 0.98443 1.22536 0.83322 0.95144 1.01576 1.86862 1.25082 1.75586 1.41007 1.22719 0.92908 0.89928 0.91828 0.85170 1.21441 0.98303 0.92256 0.84301 1.44470 1.80966 1.05677 1.03589 1.19323 1.39387 0.94000 0.84622 0.91150 1.25621 1.02102 0.96206 1.01528 1.70161 1.55229 1.04176 1.29921 0.85085 0.77422 0.77713 0.79159 1.21246 1.21326 1.19786 1.22152 0.96982 0.86637 0.96208 1.21570 0.80315 0.99680 0.97003 0.88229 0.92532 0.92395 0.92939 0.92557 0.91756 0.91198 0.92441 0.92810 0.91092 0.89468 0.92221 0.91816 0.88336 0.88350 0.86410 0.95686 0.83045 0.96709 0.95789 0.94186 0.91542 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.13 -1.42 5.93 30.59 0.18 -1.24 16 3 C -0.12 -1.36 5.21 30.59 0.16 -1.20 16 4 C -0.12 -1.52 5.21 30.59 0.16 -1.36 16 5 C -0.11 -1.62 5.13 30.60 0.16 -1.47 16 6 C -0.13 -2.47 4.69 30.60 0.14 -2.33 16 7 C 0.08 1.88 2.98 29.85 0.09 1.97 16 8 H 0.14 2.09 5.90 -2.39 -0.01 2.07 16 9 F -0.21 -6.26 16.75 44.97 0.75 -5.51 16 10 C 0.48 15.44 6.49 87.66 0.57 16.01 16 11 O -0.55 -22.08 13.48 -3.03 -0.04 -22.12 16 12 N -0.58 -18.19 3.09 -806.17 -2.49 -20.68 16 13 C 0.07 1.45 5.40 86.32 0.47 1.91 16 14 C 0.05 1.35 6.72 71.64 0.48 1.83 16 15 O -0.37 -12.10 10.24 -145.11 -1.49 -13.59 16 16 C 0.09 3.22 3.83 30.86 0.12 3.34 16 17 H 0.13 4.38 8.14 -2.39 -0.02 4.36 16 18 C 0.16 8.25 5.02 86.64 0.43 8.68 16 19 N -0.62 -34.05 3.39 -696.32 -2.36 -36.41 16 20 C -0.24 -14.72 10.25 84.04 0.86 -13.86 16 21 H 0.07 4.22 7.83 -2.91 -0.02 4.19 16 22 C -0.06 -3.65 5.48 84.87 0.47 -3.18 16 23 N -0.95 -58.14 10.26 21.65 0.22 -57.92 16 24 Si 0.98 47.98 29.55 68.60 2.03 50.01 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 28 C 0.11 4.93 6.30 86.70 0.55 5.47 16 29 C 0.12 4.33 3.41 45.70 0.16 4.49 16 30 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 1.00 7.94 -2.39 -0.02 0.98 16 42 H 0.06 1.54 8.05 -2.39 -0.02 1.52 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.10 1.89 6.41 -2.39 -0.02 1.88 16 45 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.02 0.86 6.82 -2.39 -0.02 0.84 16 47 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.01 0.84 7.49 -2.39 -0.02 0.82 16 49 H 0.02 1.36 5.74 -2.39 -0.01 1.34 16 50 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 51 H 0.07 3.40 4.80 -10.82 -0.05 3.35 16 52 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -77.60 399.61 3.18 -74.42 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.85 Total: 13.55 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 5.70 Total: 18.25 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -4.63 Total: -115.01 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.53 Total: -35.71 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.75 Total: -5.51 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -77.60 3.18 -74.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218976066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.756 kcal (2) G-P(sol) polarization free energy of solvation -77.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds