Wall clock time and date at job start Wed Apr 1 2020 02:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46923 * 2 1 4 4 H 1.09001 * 109.47347 * 303.16973 * 3 2 1 5 5 C 1.50695 * 109.46878 * 183.17085 * 3 2 1 6 6 O 1.21289 * 119.99517 * 255.07673 * 5 3 2 7 7 N 1.34774 * 120.00359 * 75.08235 * 5 3 2 8 8 C 1.46503 * 119.99923 * 179.97438 * 7 5 3 9 9 H 1.09003 * 110.27723 * 32.91105 * 8 7 5 10 10 C 1.53991 * 110.30871 * 270.70755 * 8 7 5 11 11 N 1.47899 * 107.06121 * 239.85955 * 10 8 7 12 12 C 1.46904 * 110.99799 * 145.84711 * 11 10 8 13 13 C 1.50699 * 109.47104 * 169.99971 * 12 11 10 14 14 O 1.21291 * 119.99772 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99883 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99762 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00301 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99693 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00484 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99816 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47446 * 59.99648 * 20 18 16 22 22 H 1.48500 * 109.46996 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46872 * 299.99412 * 20 18 16 24 24 C 1.48532 * 105.81798 * 25.33290 * 11 10 8 25 25 C 1.54595 * 110.30642 * 154.99465 * 8 7 5 26 26 H 1.09001 * 110.72294 * 215.31310 * 25 8 7 27 27 O 1.42903 * 110.72696 * 338.60117 * 25 8 7 28 28 N 1.46898 * 109.46842 * 63.16841 * 3 2 1 29 29 C 1.46895 * 111.00235 * 54.23500 * 28 3 2 30 30 C 1.46897 * 110.99752 * 178.18822 * 28 3 2 31 31 H 1.09007 * 109.46915 * 182.54515 * 1 2 3 32 32 H 1.08994 * 109.47093 * 302.54123 * 1 2 3 33 33 H 1.09000 * 109.47197 * 62.54455 * 1 2 3 34 34 H 1.09006 * 109.47124 * 240.00267 * 2 1 3 35 35 H 1.08994 * 109.47257 * 120.00344 * 2 1 3 36 36 H 0.96994 * 119.99879 * 359.97438 * 7 5 3 37 37 H 1.08995 * 109.91799 * 359.22017 * 10 8 7 38 38 H 1.09010 * 109.91082 * 120.50421 * 10 8 7 39 39 H 1.09000 * 109.46835 * 289.99989 * 12 11 10 40 40 H 1.08996 * 109.47227 * 49.99769 * 12 11 10 41 41 H 0.96997 * 120.00233 * 0.02562 * 15 13 12 42 42 H 0.97000 * 120.00283 * 179.97438 * 19 18 16 43 43 H 1.08995 * 110.66473 * 202.35321 * 24 11 10 44 44 H 1.09004 * 110.66450 * 79.22599 * 24 11 10 45 45 H 0.96698 * 113.99689 * 179.97438 * 27 25 8 46 46 H 1.09001 * 109.47227 * 65.67987 * 29 28 3 47 47 H 1.08995 * 109.47775 * 185.68543 * 29 28 3 48 48 H 1.09002 * 109.47171 * 305.68482 * 29 28 3 49 49 H 1.09008 * 109.47521 * 53.20711 * 30 28 3 50 50 H 1.09000 * 109.47144 * 173.20567 * 30 28 3 51 51 H 1.09002 * 109.47606 * 293.20530 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6310 1.9725 -0.8602 5 6 3.5449 1.4432 -0.0786 6 8 4.2035 1.6953 0.9082 7 7 4.1589 1.1640 -1.2453 8 6 5.6220 1.1652 -1.3218 9 1 6.0499 0.8320 -0.3763 10 6 6.1373 2.5719 -1.6781 11 7 6.8887 2.4504 -2.9462 12 6 6.7304 3.6567 -3.7695 13 6 7.6938 3.6048 -4.9272 14 8 8.4386 2.6559 -5.0541 15 7 7.7270 4.6121 -5.8219 16 6 8.6031 4.5645 -6.8754 17 1 9.2663 3.7197 -6.9885 18 6 8.6377 5.6033 -7.7976 19 7 7.8304 6.6310 -7.6603 20 14 9.8309 5.5382 -9.2334 21 1 9.5484 4.3359 -10.0578 22 1 9.6706 6.7574 -10.0659 23 1 11.2220 5.4695 -8.7182 24 6 6.3305 1.2587 -3.6350 25 6 6.0996 0.2556 -2.4769 26 1 7.0292 -0.2482 -2.2120 27 8 5.0894 -0.6936 -2.8241 28 7 1.6137 2.1125 1.2359 29 6 2.0316 1.3494 2.4195 30 6 2.1227 3.4894 1.2906 31 1 -0.3633 -1.0267 0.0456 32 1 -0.3633 0.5528 0.8663 33 1 -0.3633 0.4738 -0.9119 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.6322 0.9621 -2.0344 37 1 5.2967 3.2534 -1.8083 38 1 6.7958 2.9368 -0.8897 39 1 5.7095 3.7066 -4.1483 40 1 6.9369 4.5394 -3.1643 41 1 7.1311 5.3706 -5.7206 42 1 7.8548 7.3563 -8.3039 43 1 7.0464 0.8591 -4.3532 44 1 5.3883 1.5039 -4.1251 45 1 5.3394 -1.2883 -3.5444 46 1 3.1198 1.3440 2.4828 47 1 1.6178 1.8124 3.3152 48 1 1.6674 0.3252 2.3386 49 1 1.8415 4.0173 0.3793 50 1 1.6952 4.0007 2.1532 51 1 3.2089 3.4721 1.3801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219875323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:47 Heat of formation + Delta-G solvation = -92.524218 kcal Electronic energy + Delta-G solvation = -31239.551213 eV Core-core repulsion = 26981.724981 eV Total energy + Delta-G solvation = -4257.826232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86700 -39.49451 -38.00146 -36.86634 -35.89259 -34.54615 -33.87742 -33.09208 -31.31882 -30.43980 -28.52904 -27.79196 -27.48434 -26.33253 -24.27429 -23.49734 -22.23035 -21.49990 -20.54748 -20.19508 -19.25077 -17.96869 -17.82212 -17.37907 -16.63631 -16.21729 -15.75820 -15.62228 -15.37962 -15.00375 -14.82162 -14.73547 -14.46424 -14.23067 -13.94123 -13.65028 -13.45209 -13.37129 -13.13442 -12.86719 -12.63920 -12.36198 -12.21381 -12.12048 -12.04122 -11.92313 -11.78417 -11.64445 -11.48382 -11.34584 -11.26627 -11.07782 -10.97640 -10.90624 -10.47074 -10.43952 -10.24816 -10.09584 -9.52011 -9.26441 -8.58452 -8.35317 -8.07519 -7.98692 -6.44649 -3.85789 2.37244 2.90177 3.17388 3.23508 3.27516 3.67408 3.71163 3.86370 4.08428 4.28494 4.44853 4.46216 4.54147 4.61909 4.70899 4.93625 5.03188 5.09087 5.10300 5.18000 5.21588 5.24709 5.33935 5.35945 5.42707 5.46470 5.57261 5.63574 5.69764 5.71841 5.73994 5.77870 5.80113 5.85278 5.89710 5.95366 6.07881 6.16056 6.20684 6.32635 6.63484 6.73594 6.95038 7.05727 7.33368 7.39677 7.51819 8.02271 8.03682 8.58113 9.14668 9.50700 10.02298 10.73010 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.002193 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.752532 B =12766.494169 C =13249.951696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.065 3.935 4 H 0.104 0.896 5 C 0.488 3.512 6 O -0.541 6.541 7 N -0.705 5.705 8 C 0.144 3.856 9 H 0.101 0.899 10 C 0.025 3.975 11 N -0.485 5.485 12 C 0.038 3.962 13 C 0.445 3.555 14 O -0.578 6.578 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.010 3.990 25 C 0.093 3.907 26 H 0.085 0.915 27 O -0.562 6.562 28 N -0.513 5.513 29 C -0.001 4.001 30 C 0.009 3.991 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.406 0.594 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.103 0.897 44 H 0.048 0.952 45 H 0.385 0.615 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.972 -11.151 14.835 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.047 4.047 4 H 0.122 0.878 5 C 0.273 3.727 6 O -0.419 6.419 7 N -0.357 5.357 8 C 0.037 3.963 9 H 0.119 0.881 10 C -0.104 4.104 11 N -0.210 5.210 12 C -0.094 4.094 13 C 0.230 3.770 14 O -0.462 6.462 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.118 4.118 25 C 0.032 3.968 26 H 0.103 0.897 27 O -0.367 6.367 28 N -0.236 5.236 29 C -0.149 4.149 30 C -0.139 4.139 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.242 0.758 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.234 0.766 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.305 -11.154 15.915 24.131 hybrid contribution 0.364 0.500 -1.788 1.892 sum -13.940 -10.654 14.127 22.526 Atomic orbital electron populations 1.21669 0.94145 1.01412 1.02837 1.21602 0.97563 0.93078 1.03042 1.21987 0.89018 0.97917 0.95801 0.87803 1.22094 0.91698 0.75967 0.82944 1.90611 1.67228 1.48914 1.35168 1.46022 1.06865 1.70158 1.12646 1.21828 0.80733 0.94487 0.99211 0.88052 1.23395 0.97184 0.95785 0.94030 1.64458 1.50962 1.02617 1.02963 1.22080 0.98219 0.93535 0.95533 1.19649 0.87411 0.85160 0.84786 1.90498 1.44551 1.34700 1.76480 1.41853 1.35599 1.19476 1.23155 1.19638 1.15551 1.06222 1.01492 0.87970 1.25265 0.98096 0.95204 0.99362 1.69600 1.37993 1.09091 1.37640 0.85917 0.80367 0.77519 0.80410 1.19927 1.20965 1.19860 1.23977 0.99338 0.91595 0.96886 1.23026 0.90954 0.89008 0.93766 0.89734 1.86346 1.42861 1.49305 1.58237 1.62499 1.57118 1.02713 1.01228 1.22750 1.01912 0.98158 0.92060 1.22559 1.00159 0.88928 1.02254 0.92923 0.91296 0.92711 0.90865 0.91034 0.75844 0.93043 0.89279 0.93184 0.89200 0.77516 0.91788 0.87871 0.93400 0.76633 0.91611 0.91936 0.91533 0.91944 0.91344 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.82 37.16 0.36 -0.59 16 2 C -0.11 -0.87 4.98 -26.73 -0.13 -1.00 16 3 C 0.07 0.58 2.27 -68.87 -0.16 0.42 16 4 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.49 5.40 6.35 -10.99 -0.07 5.33 16 6 O -0.54 -7.53 11.50 5.55 0.06 -7.47 16 7 N -0.70 -7.31 4.61 -52.49 -0.24 -7.56 16 8 C 0.14 1.69 3.30 -66.57 -0.22 1.47 16 9 H 0.10 1.29 7.56 -51.93 -0.39 0.90 16 10 C 0.03 0.34 6.46 -2.76 -0.02 0.32 16 11 N -0.48 -7.76 4.91 -231.89 -1.14 -8.90 16 12 C 0.04 0.67 5.19 -4.97 -0.03 0.64 16 13 C 0.44 10.30 7.61 -10.99 -0.08 10.21 16 14 O -0.58 -15.22 14.64 5.55 0.08 -15.14 16 15 N -0.56 -14.11 5.29 -10.97 -0.06 -14.17 16 16 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 17 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 20 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 24 C 0.01 0.15 5.66 -1.90 -0.01 0.14 16 25 C 0.09 1.04 4.35 -24.87 -0.11 0.93 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 O -0.56 -5.22 12.10 -35.23 -0.43 -5.64 16 28 N -0.51 -4.88 4.39 -244.59 -1.07 -5.95 16 29 C 0.00 -0.01 8.87 60.06 0.53 0.52 16 30 C 0.01 0.09 9.11 60.06 0.55 0.64 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.51 7.62 -51.93 -0.40 0.12 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.59 6.02 -51.93 -0.31 0.28 16 36 H 0.41 3.77 7.86 -40.82 -0.32 3.45 16 37 H 0.05 0.67 7.56 -51.93 -0.39 0.28 16 38 H 0.09 1.20 8.14 -51.92 -0.42 0.77 16 39 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 40 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 41 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.10 1.73 7.10 -51.93 -0.37 1.36 16 44 H 0.05 0.67 7.81 -51.93 -0.41 0.26 16 45 H 0.39 2.27 9.12 45.56 0.42 2.69 16 46 H 0.07 0.78 5.51 -51.93 -0.29 0.49 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.57 5.82 -51.93 -0.30 0.26 16 49 H 0.06 0.56 8.12 -51.92 -0.42 0.14 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.05 0.61 5.96 -51.93 -0.31 0.30 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -32.28 400.97 -8.20 -40.48 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -7.53 Total: 14.96 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 0.38 Total: 11.14 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -1.79 Total: -60.20 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.28 Total: -28.25 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.28 -8.20 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219875323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.042 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds