Wall clock time and date at job start Wed Apr 1 2020 02:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46923 * 2 1 4 4 H 1.09001 * 109.47347 * 303.16973 * 3 2 1 5 5 C 1.50695 * 109.46878 * 183.17085 * 3 2 1 6 6 O 1.21289 * 119.99517 * 255.07673 * 5 3 2 7 7 N 1.34774 * 120.00359 * 75.08235 * 5 3 2 8 8 C 1.46503 * 119.99923 * 179.97438 * 7 5 3 9 9 H 1.09003 * 110.27723 * 32.91105 * 8 7 5 10 10 C 1.53991 * 110.30871 * 270.70755 * 8 7 5 11 11 N 1.47899 * 107.06121 * 239.85955 * 10 8 7 12 12 C 1.46904 * 110.99799 * 145.84711 * 11 10 8 13 13 C 1.50699 * 109.47104 * 169.99971 * 12 11 10 14 14 O 1.21291 * 119.99772 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99883 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99762 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00301 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99693 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00484 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99816 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47446 * 59.99648 * 20 18 16 22 22 H 1.48500 * 109.46996 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46872 * 299.99412 * 20 18 16 24 24 C 1.48532 * 105.81798 * 25.33290 * 11 10 8 25 25 C 1.54595 * 110.30642 * 154.99465 * 8 7 5 26 26 H 1.09001 * 110.72294 * 215.31310 * 25 8 7 27 27 O 1.42903 * 110.72696 * 338.60117 * 25 8 7 28 28 N 1.46898 * 109.46842 * 63.16841 * 3 2 1 29 29 C 1.46895 * 111.00235 * 54.23500 * 28 3 2 30 30 C 1.46897 * 110.99752 * 178.18822 * 28 3 2 31 31 H 1.09007 * 109.46915 * 182.54515 * 1 2 3 32 32 H 1.08994 * 109.47093 * 302.54123 * 1 2 3 33 33 H 1.09000 * 109.47197 * 62.54455 * 1 2 3 34 34 H 1.09006 * 109.47124 * 240.00267 * 2 1 3 35 35 H 1.08994 * 109.47257 * 120.00344 * 2 1 3 36 36 H 0.96994 * 119.99879 * 359.97438 * 7 5 3 37 37 H 1.08995 * 109.91799 * 359.22017 * 10 8 7 38 38 H 1.09010 * 109.91082 * 120.50421 * 10 8 7 39 39 H 1.09000 * 109.46835 * 289.99989 * 12 11 10 40 40 H 1.08996 * 109.47227 * 49.99769 * 12 11 10 41 41 H 0.96997 * 120.00233 * 0.02562 * 15 13 12 42 42 H 0.97000 * 120.00283 * 179.97438 * 19 18 16 43 43 H 1.08995 * 110.66473 * 202.35321 * 24 11 10 44 44 H 1.09004 * 110.66450 * 79.22599 * 24 11 10 45 45 H 0.96698 * 113.99689 * 179.97438 * 27 25 8 46 46 H 1.09001 * 109.47227 * 65.67987 * 29 28 3 47 47 H 1.08995 * 109.47775 * 185.68543 * 29 28 3 48 48 H 1.09002 * 109.47171 * 305.68482 * 29 28 3 49 49 H 1.09008 * 109.47521 * 53.20711 * 30 28 3 50 50 H 1.09000 * 109.47144 * 173.20567 * 30 28 3 51 51 H 1.09002 * 109.47606 * 293.20530 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6310 1.9725 -0.8602 5 6 3.5449 1.4432 -0.0786 6 8 4.2035 1.6953 0.9082 7 7 4.1589 1.1640 -1.2453 8 6 5.6220 1.1652 -1.3218 9 1 6.0499 0.8320 -0.3763 10 6 6.1373 2.5719 -1.6781 11 7 6.8887 2.4504 -2.9462 12 6 6.7304 3.6567 -3.7695 13 6 7.6938 3.6048 -4.9272 14 8 8.4386 2.6559 -5.0541 15 7 7.7270 4.6121 -5.8219 16 6 8.6031 4.5645 -6.8754 17 1 9.2663 3.7197 -6.9885 18 6 8.6377 5.6033 -7.7976 19 7 7.8304 6.6310 -7.6603 20 14 9.8309 5.5382 -9.2334 21 1 9.5484 4.3359 -10.0578 22 1 9.6706 6.7574 -10.0659 23 1 11.2220 5.4695 -8.7182 24 6 6.3305 1.2587 -3.6350 25 6 6.0996 0.2556 -2.4769 26 1 7.0292 -0.2482 -2.2120 27 8 5.0894 -0.6936 -2.8241 28 7 1.6137 2.1125 1.2359 29 6 2.0316 1.3494 2.4195 30 6 2.1227 3.4894 1.2906 31 1 -0.3633 -1.0267 0.0456 32 1 -0.3633 0.5528 0.8663 33 1 -0.3633 0.4738 -0.9119 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.6322 0.9621 -2.0344 37 1 5.2967 3.2534 -1.8083 38 1 6.7958 2.9368 -0.8897 39 1 5.7095 3.7066 -4.1483 40 1 6.9369 4.5394 -3.1643 41 1 7.1311 5.3706 -5.7206 42 1 7.8548 7.3563 -8.3039 43 1 7.0464 0.8591 -4.3532 44 1 5.3883 1.5039 -4.1251 45 1 5.3394 -1.2883 -3.5444 46 1 3.1198 1.3440 2.4828 47 1 1.6178 1.8124 3.3152 48 1 1.6674 0.3252 2.3386 49 1 1.8415 4.0173 0.3793 50 1 1.6952 4.0007 2.1532 51 1 3.2089 3.4721 1.3801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219875323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:46 Heat of formation + Delta-G solvation = -120.995135 kcal Electronic energy + Delta-G solvation = -31240.785804 eV Core-core repulsion = 26981.724981 eV Total energy + Delta-G solvation = -4259.060823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76461 -40.68144 -39.61057 -37.70205 -36.92129 -35.93665 -35.38535 -33.80563 -33.29181 -31.60232 -29.51337 -28.72167 -28.31854 -27.70163 -25.98073 -24.21002 -23.05216 -22.66894 -21.52110 -21.03280 -20.97053 -19.90116 -18.71593 -18.27790 -17.81175 -17.41204 -16.80412 -16.66916 -16.51215 -16.36258 -16.07719 -15.80669 -15.72549 -15.56234 -15.05256 -14.97333 -14.69226 -14.25692 -14.04498 -13.99796 -13.79985 -13.46450 -13.42850 -13.18599 -13.02137 -12.93749 -12.81376 -12.70409 -12.60160 -12.55314 -12.44261 -12.42462 -12.13508 -11.98576 -11.88854 -11.59919 -11.48608 -11.27058 -11.01720 -10.36069 -10.19968 -10.02047 -9.42218 -9.15213 -8.47073 -5.95928 1.39179 1.41331 1.51752 1.52359 2.02224 2.03969 2.27916 2.66753 2.94827 3.08820 3.19006 3.33377 3.48933 3.66594 3.73338 3.90142 4.05223 4.07451 4.13701 4.23909 4.25483 4.31583 4.38798 4.46666 4.50646 4.61277 4.63307 4.64512 4.70409 4.78845 4.80479 4.82503 4.94229 4.98000 5.04704 5.10667 5.19721 5.27261 5.39761 5.42357 5.54476 5.72751 5.81317 5.89689 5.98287 6.02833 6.51411 6.59208 6.74642 7.11908 7.20368 7.55006 8.10333 8.70141 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.002193 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.752532 B =12766.494169 C =13249.951696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.068 3.932 4 H 0.118 0.882 5 C 0.486 3.514 6 O -0.571 6.571 7 N -0.696 5.696 8 C 0.149 3.851 9 H 0.093 0.907 10 C 0.032 3.968 11 N -0.506 5.506 12 C 0.050 3.950 13 C 0.444 3.556 14 O -0.613 6.613 15 N -0.575 5.575 16 C -0.332 4.332 17 H 0.080 0.920 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.992 3.008 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.273 1.273 24 C 0.013 3.987 25 C 0.111 3.889 26 H 0.086 0.914 27 O -0.559 6.559 28 N -0.512 5.512 29 C 0.003 3.997 30 C 0.012 3.988 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.414 0.586 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.402 0.598 46 H 0.042 0.958 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.076 0.924 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.536 -11.574 14.729 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C -0.045 4.045 4 H 0.136 0.864 5 C 0.273 3.727 6 O -0.451 6.451 7 N -0.349 5.349 8 C 0.042 3.958 9 H 0.112 0.888 10 C -0.096 4.096 11 N -0.231 5.231 12 C -0.081 4.081 13 C 0.231 3.769 14 O -0.499 6.499 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.816 3.184 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.115 4.115 25 C 0.051 3.949 26 H 0.104 0.896 27 O -0.366 6.366 28 N -0.234 5.234 29 C -0.144 4.144 30 C -0.136 4.136 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.253 0.747 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.901 -11.590 15.802 25.236 hybrid contribution 0.834 0.584 -1.711 1.991 sum -15.068 -11.006 14.090 23.381 Atomic orbital electron populations 1.21623 0.93224 1.01946 1.02745 1.21586 0.98207 0.91970 1.03033 1.22111 0.87341 0.98990 0.96008 0.86389 1.22543 0.92576 0.75145 0.82467 1.90619 1.68053 1.50188 1.36218 1.45946 1.06211 1.69804 1.12891 1.21642 0.81593 0.93652 0.98888 0.88845 1.23338 0.97001 0.96915 0.92376 1.64356 1.52518 1.02437 1.03819 1.21922 0.97387 0.95046 0.93750 1.20618 0.87279 0.83759 0.85248 1.90473 1.46128 1.35842 1.77461 1.41925 1.35685 1.20224 1.23369 1.19615 1.16742 1.06399 1.03364 0.90195 1.26040 0.99454 0.94508 1.01324 1.69665 1.38734 1.09388 1.38444 0.84997 0.78086 0.77960 0.77357 1.19545 1.19594 1.19792 1.23894 0.98470 0.91763 0.97362 1.22723 0.91474 0.88670 0.92068 0.89568 1.86320 1.42137 1.49076 1.59100 1.62546 1.56692 1.02646 1.01480 1.22697 1.00332 0.98898 0.92513 1.22533 0.98661 0.89347 1.03090 0.92042 0.92088 0.92129 0.90109 0.91810 0.74918 0.92440 0.89655 0.91066 0.87672 0.77108 0.91310 0.90807 0.92846 0.74668 0.93999 0.91200 0.90573 0.91124 0.90519 0.95322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.82 71.98 0.71 -0.80 16 2 C -0.11 -1.42 4.98 30.59 0.15 -1.27 16 3 C 0.07 1.08 2.27 44.17 0.10 1.18 16 4 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 5 C 0.49 10.14 6.35 87.66 0.56 10.70 16 6 O -0.57 -15.69 11.50 -3.06 -0.04 -15.73 16 7 N -0.70 -13.22 4.61 -438.37 -2.02 -15.24 16 8 C 0.15 3.33 3.30 45.87 0.15 3.48 16 9 H 0.09 2.31 7.56 -2.39 -0.02 2.29 16 10 C 0.03 0.83 6.46 86.45 0.56 1.38 16 11 N -0.51 -15.87 4.91 -887.57 -4.35 -20.22 16 12 C 0.05 1.73 5.19 85.56 0.44 2.18 16 13 C 0.44 20.79 7.61 87.66 0.67 21.45 16 14 O -0.61 -33.07 14.64 -3.06 -0.04 -33.12 16 15 N -0.57 -29.18 5.29 -306.99 -1.62 -30.81 16 16 C -0.33 -18.62 9.68 84.04 0.81 -17.80 16 17 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 19 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 20 Si 0.99 42.51 29.55 68.60 2.03 44.53 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C 0.01 0.37 5.66 86.65 0.49 0.86 16 25 C 0.11 2.35 4.35 31.80 0.14 2.49 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 O -0.56 -9.10 12.10 -148.98 -1.80 -10.91 16 28 N -0.51 -8.99 4.39 -927.75 -4.07 -13.06 16 29 C 0.00 0.06 8.87 127.69 1.13 1.19 16 30 C 0.01 0.22 9.11 127.69 1.16 1.38 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.78 7.62 -2.39 -0.02 0.76 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.06 0.94 6.02 -2.39 -0.01 0.93 16 36 H 0.41 6.66 7.86 -92.71 -0.73 5.93 16 37 H 0.06 1.40 7.56 -2.39 -0.02 1.38 16 38 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.07 2.16 7.83 -2.39 -0.02 2.14 16 40 H 0.11 3.29 8.08 -2.39 -0.02 3.27 16 41 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 42 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.07 2.51 7.10 -2.39 -0.02 2.49 16 44 H 0.05 1.41 7.81 -2.39 -0.02 1.40 16 45 H 0.40 3.82 9.12 -74.06 -0.68 3.14 16 46 H 0.04 0.99 5.51 -2.39 -0.01 0.97 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 1.21 5.82 -2.39 -0.01 1.19 16 49 H 0.07 1.16 8.12 -2.38 -0.02 1.14 16 50 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.03 0.67 5.96 -2.39 -0.01 0.65 16 Total: -1.00 -70.06 400.97 -5.26 -75.32 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -1.17 Total: 42.22 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 7.54 Total: 26.17 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -11.78 Total: -128.49 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -1.88 Total: -59.75 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -70.06 -5.26 -75.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219875323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.675 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds