Wall clock time and date at job start Wed Apr 1 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47393 * 2 1 4 4 H 1.08998 * 109.46796 * 57.89283 * 3 2 1 5 5 C 1.50695 * 109.47246 * 177.89773 * 3 2 1 6 6 O 1.21284 * 120.00136 * 104.53257 * 5 3 2 7 7 N 1.34781 * 119.99994 * 284.53355 * 5 3 2 8 8 C 1.46499 * 119.99962 * 180.02562 * 7 5 3 9 9 H 1.08995 * 110.29305 * 32.86352 * 8 7 5 10 10 C 1.54392 * 110.31820 * 270.63112 * 8 7 5 11 11 N 1.48559 * 104.58949 * 217.25200 * 10 8 7 12 12 C 1.46903 * 110.99785 * 159.04262 * 11 10 8 13 13 C 1.50706 * 109.47072 * 61.21496 * 12 11 10 14 14 O 1.21287 * 119.99667 * 6.07260 * 13 12 11 15 15 N 1.34775 * 120.00005 * 186.06665 * 13 12 11 16 16 C 1.37093 * 120.00196 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99636 * 0.02562 * 16 15 13 18 18 C 1.38944 * 120.00296 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00160 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00189 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47093 * 89.99753 * 20 18 16 22 22 H 1.48499 * 109.47439 * 210.00629 * 20 18 16 23 23 H 1.48507 * 109.47052 * 330.00377 * 20 18 16 24 24 C 1.48557 * 104.22628 * 39.48861 * 11 10 8 25 25 C 1.54261 * 110.32324 * 154.99862 * 8 7 5 26 26 H 1.08993 * 110.32109 * 237.88589 * 25 8 7 27 27 O 1.42894 * 110.32222 * 359.97438 * 25 8 7 28 28 N 1.46906 * 109.46603 * 297.89436 * 3 2 1 29 29 C 1.46900 * 110.99329 * 180.35699 * 28 3 2 30 30 C 1.46898 * 111.00166 * 304.30843 * 28 3 2 31 31 H 1.08997 * 109.47460 * 185.01064 * 1 2 3 32 32 H 1.08996 * 109.47015 * 305.00970 * 1 2 3 33 33 H 1.09002 * 109.46732 * 65.00819 * 1 2 3 34 34 H 1.09004 * 109.47131 * 240.00243 * 2 1 3 35 35 H 1.09001 * 109.47027 * 119.99846 * 2 1 3 36 36 H 0.96998 * 120.00084 * 359.97438 * 7 5 3 37 37 H 1.09002 * 110.40950 * 336.03014 * 10 8 7 38 38 H 1.09000 * 110.41000 * 98.47677 * 10 8 7 39 39 H 1.08997 * 109.47494 * 181.21660 * 12 11 10 40 40 H 1.09011 * 109.46914 * 301.22111 * 12 11 10 41 41 H 0.97001 * 119.99657 * 0.02562 * 15 13 12 42 42 H 0.96998 * 120.00003 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.41093 * 201.73836 * 24 11 10 44 44 H 1.08992 * 110.51514 * 79.34014 * 24 11 10 45 45 H 0.96709 * 114.00051 * 180.02562 * 27 25 8 46 46 H 1.09001 * 109.46779 * 183.95711 * 29 28 3 47 47 H 1.08993 * 109.47511 * 63.95723 * 29 28 3 48 48 H 1.09001 * 109.47360 * 303.95202 * 29 28 3 49 49 H 1.08996 * 109.47295 * 290.74770 * 30 28 3 50 50 H 1.09000 * 109.46920 * 50.74966 * 30 28 3 51 51 H 1.09005 * 109.46697 * 170.74590 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6462 1.9671 0.8705 5 6 3.5461 1.4428 0.0521 6 8 4.1874 1.6940 -0.9462 7 7 4.1805 1.1638 1.2081 8 6 5.6446 1.1647 1.2589 9 1 6.0462 1.9090 0.5714 10 6 6.1937 -0.2369 0.9158 11 7 7.3665 -0.4088 1.8113 12 6 7.6993 -1.8302 1.9759 13 6 8.0545 -2.4215 0.6360 14 8 8.1402 -1.7055 -0.3392 15 7 8.2771 -3.7457 0.5215 16 6 8.6008 -4.2836 -0.6973 17 1 8.6778 -3.6459 -1.5656 18 6 8.8298 -5.6489 -0.8155 19 7 9.1406 -6.1644 -1.9837 20 14 8.6974 -6.7517 0.6864 21 1 7.3037 -7.2483 0.8144 22 1 9.6220 -7.9041 0.5375 23 1 9.0610 -5.9791 1.9014 24 6 6.9326 0.1891 3.1001 25 6 6.1307 1.4448 2.6959 26 1 6.7709 2.3267 2.7137 27 8 5.0153 1.6249 3.5708 28 7 1.5923 2.1201 -1.2242 29 6 2.0717 3.5081 -1.2628 30 6 2.0192 1.3822 -2.4205 31 1 -0.3634 -1.0237 0.0898 32 1 -0.3633 0.5896 0.8417 33 1 -0.3633 0.4342 -0.9315 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.6676 0.9633 2.0066 37 1 5.4431 -1.0001 1.1216 38 1 6.5033 -0.2787 -0.1285 39 1 8.5477 -1.9287 2.6530 40 1 6.8405 -2.3587 2.3901 41 1 8.2083 -4.3183 1.3014 42 1 9.3008 -7.1175 -2.0662 43 1 7.7986 0.4680 3.7004 44 1 6.2983 -0.5065 3.6495 45 1 5.2606 1.8047 4.4888 46 1 1.6683 4.0074 -2.1437 47 1 3.1607 3.5153 -1.3078 48 1 1.7417 4.0316 -0.3655 49 1 3.1017 1.4544 -2.5249 50 1 1.7326 0.3351 -2.3230 51 1 1.5399 1.8097 -3.3012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220376433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:48 Heat of formation + Delta-G solvation = -117.103583 kcal Electronic energy + Delta-G solvation = -31680.285124 eV Core-core repulsion = 27421.393051 eV Total energy + Delta-G solvation = -4258.892073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76878 -40.80370 -39.71761 -37.75166 -36.89303 -35.96474 -35.50168 -33.89054 -33.77490 -31.68580 -29.55926 -28.62067 -28.36484 -27.80570 -25.84235 -24.25439 -23.12948 -22.56569 -21.65498 -21.29146 -20.98090 -20.22490 -18.79169 -18.24077 -17.80525 -17.35052 -16.94505 -16.76223 -16.58537 -16.41215 -16.10672 -15.81357 -15.59346 -15.50803 -15.22448 -14.95808 -14.59705 -14.55311 -14.21146 -14.14371 -13.99377 -13.53936 -13.34230 -13.19122 -13.13486 -13.01305 -12.88958 -12.81426 -12.62448 -12.48734 -12.44154 -12.35864 -12.03685 -12.00232 -11.90619 -11.65266 -11.52057 -11.29910 -11.05145 -10.43240 -10.28883 -10.14677 -9.51476 -9.21760 -8.44258 -6.05991 1.27140 1.33141 1.42526 1.50074 1.90652 1.99437 2.20560 2.62842 2.90082 3.02610 3.11310 3.28920 3.48247 3.62267 3.73645 3.84986 4.01462 4.02920 4.12275 4.18796 4.19430 4.29321 4.42725 4.44691 4.45814 4.57719 4.60697 4.63684 4.66145 4.75094 4.84702 4.87126 4.93316 4.99215 5.02291 5.06765 5.15384 5.23982 5.39681 5.48380 5.50431 5.69378 5.82445 5.85608 5.92004 5.95059 6.53688 6.55850 6.84690 6.86289 7.25307 7.35112 7.93284 8.73704 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011041 B = 0.002984 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.508041 B = 9379.758524 C =10644.055617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.132 0.868 5 C 0.478 3.522 6 O -0.578 6.578 7 N -0.693 5.693 8 C 0.148 3.852 9 H 0.075 0.925 10 C 0.037 3.963 11 N -0.504 5.504 12 C 0.046 3.954 13 C 0.445 3.555 14 O -0.609 6.609 15 N -0.589 5.589 16 C -0.330 4.330 17 H 0.050 0.950 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.228 1.228 24 C 0.003 3.997 25 C 0.114 3.886 26 H 0.091 0.909 27 O -0.563 6.563 28 N -0.508 5.508 29 C 0.013 3.987 30 C 0.002 3.998 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.420 0.580 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.407 0.593 46 H 0.076 0.924 47 H 0.020 0.980 48 H 0.082 0.918 49 H 0.035 0.965 50 H 0.069 0.931 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.019 14.997 19.811 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C -0.040 4.040 4 H 0.150 0.850 5 C 0.264 3.736 6 O -0.458 6.458 7 N -0.347 5.347 8 C 0.041 3.959 9 H 0.093 0.907 10 C -0.092 4.092 11 N -0.229 5.229 12 C -0.085 4.085 13 C 0.233 3.767 14 O -0.493 6.493 15 N -0.231 5.231 16 C -0.459 4.459 17 H 0.069 0.931 18 C -0.214 4.214 19 N -0.576 5.576 20 Si 0.787 3.213 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.151 1.151 24 C -0.125 4.125 25 C 0.054 3.946 26 H 0.109 0.891 27 O -0.372 6.372 28 N -0.230 5.230 29 C -0.135 4.135 30 C -0.146 4.146 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.259 0.741 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.148 0.852 40 H 0.100 0.900 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.092 0.908 45 H 0.259 0.741 46 H 0.095 0.905 47 H 0.039 0.961 48 H 0.100 0.900 49 H 0.054 0.946 50 H 0.088 0.912 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.837 15.669 17.594 28.957 hybrid contribution 0.988 -1.486 0.563 1.871 sum -15.849 14.183 18.157 27.964 Atomic orbital electron populations 1.21578 0.92519 1.01888 1.03001 1.21623 0.98829 0.92345 1.02531 1.22138 0.86717 0.98658 0.96530 0.85033 1.22756 0.92834 0.75232 0.82780 1.90662 1.69380 1.50384 1.35357 1.45830 1.06102 1.69970 1.12795 1.21590 0.81288 0.95905 0.97091 0.90656 1.23326 0.91152 0.96306 0.98453 1.65074 1.34119 1.13948 1.09800 1.22075 1.03715 0.89085 0.93658 1.20939 0.81979 0.81950 0.91843 1.90563 1.56295 1.60539 1.41925 1.42000 1.64219 1.07498 1.09416 1.18973 1.46635 0.93017 0.87311 0.93147 1.26168 0.95830 0.97954 1.01495 1.69817 1.47303 1.14161 1.26282 0.85338 0.79597 0.78280 0.78117 1.18115 1.19890 1.15126 1.24055 1.00789 0.96434 0.91215 1.22489 0.87348 0.97344 0.87423 0.89115 1.86271 1.32155 1.94332 1.24464 1.62582 1.56398 1.02719 1.01258 1.22534 0.98378 0.88969 1.03596 1.22693 1.00023 0.99049 0.92859 0.92256 0.91145 0.92400 0.93099 0.90058 0.74107 0.94171 0.93174 0.85211 0.90037 0.77413 0.91082 0.86814 0.90772 0.74054 0.90491 0.96121 0.89958 0.94614 0.91249 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.71 71.98 0.70 -1.19 16 2 C -0.12 -2.09 5.01 30.59 0.15 -1.93 16 3 C 0.07 1.41 2.27 44.17 0.10 1.51 16 4 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 5 C 0.48 12.71 6.32 87.65 0.55 13.27 16 6 O -0.58 -20.97 11.55 -3.04 -0.04 -21.01 16 7 N -0.69 -15.63 4.85 -438.28 -2.13 -17.76 16 8 C 0.15 3.92 3.41 45.89 0.16 4.08 16 9 H 0.08 2.44 7.56 -2.39 -0.02 2.42 16 10 C 0.04 1.26 5.30 86.45 0.46 1.72 16 11 N -0.50 -14.98 5.18 -885.99 -4.59 -19.57 16 12 C 0.05 1.40 5.38 85.56 0.46 1.86 16 13 C 0.45 20.67 7.43 87.66 0.65 21.32 16 14 O -0.61 -35.29 14.02 -3.05 -0.04 -35.33 16 15 N -0.59 -28.29 5.09 -306.99 -1.56 -29.85 16 16 C -0.33 -19.81 10.16 84.04 0.85 -18.96 16 17 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 18 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 19 N -0.94 -57.38 13.96 21.66 0.30 -57.08 16 20 Si 0.97 38.86 27.74 68.60 1.90 40.76 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 24 C 0.00 0.05 6.23 86.45 0.54 0.58 16 25 C 0.11 1.88 4.42 31.49 0.14 2.02 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 O -0.56 -5.87 11.53 -148.98 -1.72 -7.59 16 28 N -0.51 -11.01 4.47 -927.73 -4.15 -15.16 16 29 C 0.01 0.28 9.17 127.69 1.17 1.45 16 30 C 0.00 0.04 8.91 127.69 1.14 1.18 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.94 7.82 -2.39 -0.02 0.92 16 34 H 0.05 1.17 6.03 -2.38 -0.01 1.16 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.42 7.14 7.26 -92.71 -0.67 6.47 16 37 H 0.04 1.35 7.87 -2.39 -0.02 1.33 16 38 H 0.05 2.34 6.54 -2.39 -0.02 2.33 16 39 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.08 2.01 7.98 -2.38 -0.02 1.99 16 41 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 42 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.03 7.87 -2.39 -0.02 1.01 16 45 H 0.41 0.39 9.12 -74.05 -0.68 -0.29 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.02 0.55 6.00 -2.39 -0.01 0.54 16 48 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.04 1.17 5.51 -2.39 -0.01 1.16 16 50 H 0.07 1.71 5.69 -2.39 -0.01 1.70 16 51 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -88.12 396.45 -5.45 -93.56 By element: Atomic # 1 Polarization: 43.51 SS G_CDS: -0.97 Total: 42.54 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 7.54 Total: 26.48 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -12.12 Total: -139.41 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -1.80 Total: -63.93 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.90 Total: 40.76 kcal Total: -88.12 -5.45 -93.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220376433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.539 kcal (2) G-P(sol) polarization free energy of solvation -88.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds