Wall clock time and date at job start Wed Apr 1 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 N 1.46908 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.46892 * 110.99954 * 66.03887 * 4 3 2 6 6 C 1.46897 * 111.00036 * 190.00381 * 4 3 2 7 7 C 1.50697 * 109.47207 * 170.00098 * 6 4 3 8 8 O 1.21284 * 120.00016 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99915 * 179.97438 * 7 6 4 10 10 C 1.46508 * 119.99754 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.28541 * 35.67572 * 10 9 7 12 12 C 1.54372 * 110.32431 * 273.54575 * 10 9 7 13 13 N 1.48566 * 104.59367 * 217.24901 * 12 10 9 14 14 C 1.46900 * 111.00074 * 159.03824 * 13 12 10 15 15 C 1.50696 * 109.47148 * 170.00195 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99923 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00181 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99646 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00131 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00326 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99878 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47390 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47554 * 119.99565 * 22 20 18 25 25 H 1.48497 * 109.47224 * 239.99400 * 22 20 18 26 26 C 1.48567 * 104.21746 * 39.48304 * 13 12 10 27 27 C 1.54266 * 110.32172 * 157.90363 * 10 9 7 28 28 H 1.08996 * 110.32625 * 237.79262 * 27 10 9 29 29 O 1.42897 * 110.32016 * 359.90408 * 27 10 9 30 30 H 1.08999 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47339 * 300.00319 * 1 2 3 32 32 H 1.09008 * 109.46610 * 60.00088 * 1 2 3 33 33 H 1.08995 * 109.47339 * 239.99681 * 2 1 3 34 34 H 1.08999 * 109.46583 * 119.99719 * 2 1 3 35 35 H 1.08995 * 109.47348 * 59.99687 * 3 2 1 36 36 H 1.08999 * 109.47236 * 299.99319 * 3 2 1 37 37 H 1.09003 * 109.47322 * 183.95496 * 5 4 3 38 38 H 1.08996 * 109.47970 * 303.95450 * 5 4 3 39 39 H 1.09008 * 109.47131 * 63.96445 * 5 4 3 40 40 H 1.08994 * 109.47608 * 49.98931 * 6 4 3 41 41 H 1.09002 * 109.46399 * 289.99380 * 6 4 3 42 42 H 0.96993 * 120.00427 * 359.97438 * 9 7 6 43 43 H 1.08996 * 110.41390 * 98.47516 * 12 10 9 44 44 H 1.08999 * 110.51545 * 336.07722 * 12 10 9 45 45 H 1.08997 * 109.47344 * 290.00656 * 14 13 12 46 46 H 1.09001 * 109.46517 * 50.00062 * 14 13 12 47 47 H 0.96996 * 120.00600 * 0.02562 * 17 15 14 48 48 H 0.97000 * 120.00337 * 179.97438 * 21 20 18 49 49 H 1.09004 * 110.40948 * 79.29550 * 26 13 12 50 50 H 1.08997 * 110.40880 * 201.73603 * 26 13 12 51 51 H 0.96706 * 113.99692 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0350 0.8858 -1.2541 6 6 4.0356 2.7930 0.2376 7 6 5.5220 2.7182 0.4743 8 8 6.0870 1.6454 0.4476 9 7 6.2234 3.8435 0.7155 10 6 7.6684 3.7706 0.9462 11 1 8.1115 2.9925 0.3247 12 6 7.9602 3.4972 2.4372 13 7 9.1733 4.3017 2.7348 14 6 9.2979 4.5525 4.1769 15 6 10.6501 5.1509 4.4676 16 8 11.4327 5.3494 3.5625 17 7 10.9897 5.4654 5.7333 18 6 12.2197 6.0103 5.9979 19 1 12.9166 6.1870 5.1920 20 6 12.5700 6.3341 7.3029 21 7 11.7223 6.1185 8.2836 22 14 14.2455 7.0771 7.6631 23 1 15.0073 7.2183 6.3962 24 1 14.0708 8.4131 8.2875 25 1 14.9909 6.1903 8.5922 26 6 8.9618 5.5698 1.9902 27 6 8.3273 5.1342 0.6521 28 1 9.0953 5.0262 -0.1137 29 8 7.3421 6.0818 0.2357 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 5.1223 0.8325 -1.2000 38 1 3.6293 -0.1144 -1.4060 39 1 3.7437 1.5263 -2.0866 40 1 3.5494 3.2235 1.1130 41 1 3.8373 3.4189 -0.6326 42 1 5.7716 4.7015 0.7365 43 1 8.1582 2.4375 2.5977 44 1 7.1252 3.8252 3.0563 45 1 8.5183 5.2450 4.4940 46 1 9.1920 3.6130 4.7194 47 1 10.3640 5.3063 6.4572 48 1 11.9670 6.3442 9.1947 49 1 8.2829 6.2236 2.5379 50 1 9.9138 6.0706 1.8143 51 1 7.6988 6.9585 0.0372 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220817600.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:29 Heat of formation + Delta-G solvation = -98.632526 kcal Electronic energy + Delta-G solvation = -30069.579225 eV Core-core repulsion = 25811.488117 eV Total energy + Delta-G solvation = -4258.091108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40593 -39.21356 -37.99338 -37.38547 -35.84366 -34.32550 -33.80310 -33.51458 -31.29428 -30.52910 -28.78288 -27.75479 -27.29047 -26.33106 -24.30510 -23.53002 -21.55796 -21.17833 -20.78807 -20.43441 -19.19289 -17.90551 -17.78578 -17.19177 -16.38237 -16.21564 -16.09233 -15.64274 -15.36288 -14.95324 -14.91933 -14.82775 -14.55930 -14.20036 -14.07139 -13.75569 -13.59914 -13.41056 -13.11755 -12.90975 -12.84368 -12.49436 -12.24168 -12.11308 -12.07897 -12.02516 -11.71450 -11.54598 -11.43549 -11.40951 -11.31221 -11.10061 -10.92574 -10.88692 -10.34826 -10.23394 -10.13237 -9.87017 -9.51058 -9.14789 -8.62756 -8.57732 -8.07076 -7.95912 -6.41986 -3.82895 2.53466 2.77679 3.15919 3.26559 3.33557 3.59231 3.89097 3.91312 4.10780 4.29961 4.49873 4.54710 4.57841 4.64275 4.65784 4.88487 4.94277 5.01706 5.04719 5.10715 5.14139 5.15084 5.23417 5.27311 5.27524 5.38496 5.41196 5.42287 5.63731 5.65351 5.74741 5.77538 5.82372 5.85026 5.91664 5.97540 5.98541 6.16408 6.24377 6.33984 6.59601 6.72652 6.95474 7.08891 7.37562 7.48764 7.54976 8.05877 8.18384 8.61365 9.17905 9.54181 10.05858 10.75870 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.001783 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.862977 B =15702.444681 C =16419.112870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.525 5.525 5 C 0.016 3.984 6 C 0.037 3.963 7 C 0.512 3.488 8 O -0.523 6.523 9 N -0.713 5.713 10 C 0.155 3.845 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.477 5.477 14 C 0.036 3.964 15 C 0.446 3.554 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.006 3.994 27 C 0.094 3.906 28 H 0.079 0.921 29 O -0.568 6.568 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.409 0.591 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.091 0.909 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.050 0.950 50 H 0.102 0.898 51 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.712 -4.695 -16.694 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.249 5.249 5 C -0.132 4.132 6 C -0.094 4.094 7 C 0.298 3.702 8 O -0.398 6.398 9 N -0.367 5.367 10 C 0.049 3.951 11 H 0.122 0.878 12 C -0.109 4.109 13 N -0.202 5.202 14 C -0.096 4.096 15 C 0.231 3.769 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.122 4.122 27 C 0.034 3.966 28 H 0.097 0.903 29 O -0.374 6.374 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.037 0.963 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.245 0.755 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.109 0.891 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.120 0.880 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -20.483 -6.377 -16.816 27.258 hybrid contribution -0.407 2.167 0.513 2.263 sum -20.890 -4.210 -16.304 26.831 Atomic orbital electron populations 1.21740 0.95569 1.01860 1.01720 1.21538 0.95273 0.96157 1.03005 1.22215 0.86583 0.97719 1.00775 1.61637 1.07167 1.19788 1.36296 1.22617 1.03010 0.99410 0.88128 1.21957 0.93143 0.91580 1.02736 1.20507 0.89107 0.84091 0.76533 1.90686 1.71166 1.28174 1.49787 1.45783 1.08288 1.10002 1.72619 1.21694 0.80484 0.96403 0.96554 0.87784 1.23607 0.92188 1.00289 0.94796 1.65094 1.34387 1.13238 1.07506 1.22069 0.97388 1.01233 0.88906 1.19664 0.88637 0.84756 0.83857 1.90503 1.52625 1.58200 1.44817 1.41865 1.16565 1.55316 1.06466 1.19747 0.92460 1.36777 0.93794 0.87860 1.25259 0.99615 0.97926 0.95174 1.69620 1.35870 1.48453 1.00392 0.85801 0.81564 0.78379 0.78598 1.19228 1.20809 1.20744 1.23901 1.01746 0.92887 0.93691 1.22845 0.89721 0.88124 0.95880 0.90327 1.86227 1.36930 1.24719 1.89552 0.92462 0.92611 0.92942 0.91852 0.90903 0.90700 0.94884 0.89261 0.91166 0.96286 0.87917 0.91962 0.75494 0.89101 0.93334 0.93054 0.89083 0.77515 0.91934 0.93159 0.88014 0.76488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.82 5.87 -26.73 -0.16 -0.98 16 3 C 0.05 0.39 4.96 -3.82 -0.02 0.37 16 4 N -0.52 -4.96 4.50 -244.38 -1.10 -6.06 16 5 C 0.02 0.15 9.01 60.06 0.54 0.69 16 6 C 0.04 0.31 5.45 -4.98 -0.03 0.29 16 7 C 0.51 5.85 7.55 -10.99 -0.08 5.76 16 8 O -0.52 -7.89 14.01 5.55 0.08 -7.81 16 9 N -0.71 -7.42 4.90 -52.46 -0.26 -7.68 16 10 C 0.15 1.89 3.36 -66.55 -0.22 1.67 16 11 H 0.10 1.39 7.64 -51.93 -0.40 1.00 16 12 C 0.02 0.28 6.17 -2.18 -0.01 0.27 16 13 N -0.48 -7.91 4.98 -231.41 -1.15 -9.06 16 14 C 0.04 0.64 5.32 -4.98 -0.03 0.62 16 15 C 0.45 10.48 7.63 -10.99 -0.08 10.40 16 16 O -0.58 -15.44 14.80 5.55 0.08 -15.36 16 17 N -0.57 -14.30 5.29 -10.97 -0.06 -14.36 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 22 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.01 0.09 5.67 -2.18 -0.01 0.08 16 27 C 0.09 1.07 4.42 -25.35 -0.11 0.95 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 O -0.57 -5.05 11.50 -35.23 -0.41 -5.45 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.06 0.43 6.47 -51.93 -0.34 0.10 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.48 7.93 -51.93 -0.41 0.07 16 36 H 0.03 0.22 8.12 -51.93 -0.42 -0.21 16 37 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 38 H 0.07 0.59 6.30 -51.93 -0.33 0.27 16 39 H 0.02 0.15 8.14 -51.92 -0.42 -0.27 16 40 H 0.10 0.70 7.93 -51.93 -0.41 0.29 16 41 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.41 3.64 7.18 -40.82 -0.29 3.35 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.05 0.65 7.91 -51.93 -0.41 0.23 16 45 H 0.05 0.84 7.77 -51.93 -0.40 0.43 16 46 H 0.09 1.52 8.08 -51.93 -0.42 1.10 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 50 H 0.10 1.71 7.24 -51.93 -0.38 1.34 16 51 H 0.39 2.11 9.12 45.56 0.42 2.53 16 LS Contribution 408.12 15.07 6.15 6.15 Total: -1.00 -33.58 408.12 -8.76 -42.35 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -7.71 Total: 13.37 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.09 Total: 11.74 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -1.84 Total: -60.95 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.25 Total: -28.62 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.58 -8.76 -42.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220817600.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.288 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds