Wall clock time and date at job start Wed Apr 1 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 N 1.46506 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00072 * 180.02562 * 4 3 2 6 6 O 1.21583 * 120.00212 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99868 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00109 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47010 * 300.00045 * 8 7 5 10 10 C 1.52995 * 109.47128 * 60.00223 * 8 7 5 11 11 C 1.50697 * 109.47280 * 180.02562 * 8 7 5 12 12 O 1.21278 * 120.00232 * 145.00018 * 11 8 7 13 13 N 1.34774 * 120.00152 * 324.99985 * 11 8 7 14 14 C 1.46496 * 120.00371 * 179.97438 * 13 11 8 15 15 H 1.08999 * 110.64182 * 36.68681 * 14 13 11 16 16 C 1.54323 * 110.72185 * 273.54853 * 14 13 11 17 17 N 1.47028 * 107.27383 * 219.44135 * 16 14 13 18 18 C 1.36926 * 125.65137 * 178.97459 * 17 16 14 19 19 H 1.08000 * 120.00041 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00344 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99528 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00529 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46860 * 59.99619 * 22 20 18 24 24 H 1.48493 * 109.47445 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46904 * 300.00167 * 22 20 18 26 26 C 1.47432 * 108.69962 * 358.93996 * 17 16 14 27 27 C 1.54916 * 104.83214 * 24.12772 * 26 17 16 28 28 H 1.08994 * 110.99947 * 204.91412 * 27 26 17 29 29 O 1.42898 * 111.00171 * 81.06639 * 27 26 17 30 30 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 31 31 H 1.09004 * 109.47298 * 59.99717 * 1 2 3 32 32 H 1.09004 * 109.47552 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46997 * 240.00426 * 2 1 3 34 34 H 1.08996 * 109.47452 * 120.00000 * 2 1 3 35 35 H 1.09001 * 109.47289 * 60.00050 * 3 2 1 36 36 H 1.09004 * 109.47261 * 300.00306 * 3 2 1 37 37 H 0.97001 * 119.99251 * 0.02562 * 4 3 2 38 38 H 0.97006 * 119.99964 * 0.02562 * 7 5 4 39 39 H 1.08998 * 109.46910 * 59.99938 * 9 8 7 40 40 H 1.08997 * 109.47050 * 179.97438 * 9 8 7 41 41 H 1.08998 * 109.46964 * 299.99694 * 9 8 7 42 42 H 1.09003 * 109.47500 * 59.99839 * 10 8 7 43 43 H 1.08997 * 109.47264 * 180.02562 * 10 8 7 44 44 H 1.09008 * 109.46988 * 300.00292 * 10 8 7 45 45 H 0.97005 * 119.99727 * 0.02562 * 13 11 8 46 46 H 1.09001 * 109.88109 * 338.85456 * 16 14 13 47 47 H 1.08998 * 109.88726 * 99.87056 * 16 14 13 48 48 H 0.96994 * 119.99699 * 179.97438 * 21 20 18 49 49 H 1.08997 * 110.36491 * 142.96669 * 26 17 16 50 50 H 1.08994 * 110.36513 * 265.17626 * 26 17 16 51 51 H 0.96697 * 114.00649 * 67.80508 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5710 3.6627 0.0002 7 7 5.5266 2.6097 -0.0003 8 6 6.2591 3.8784 0.0008 9 6 5.8895 4.6817 -1.2479 10 6 5.8896 4.6796 1.2507 11 6 7.7407 3.6030 -0.0001 12 8 8.4939 4.3387 -0.6021 13 7 8.2289 2.5392 0.6680 14 6 9.6691 2.2711 0.6667 15 1 10.2334 3.2032 0.6971 16 6 10.0672 1.4319 -0.5657 17 7 11.0748 0.4570 -0.1230 18 6 11.6707 -0.4894 -0.9130 19 1 11.4092 -0.5629 -1.9583 20 6 12.6110 -1.3546 -0.3704 21 7 12.9301 -1.2647 0.9034 22 14 13.4235 -2.6461 -1.4479 23 1 14.1487 -1.9789 -2.5589 24 1 14.3827 -3.4365 -0.6354 25 1 12.3853 -3.5492 -2.0064 26 6 11.3379 0.6677 1.3123 27 6 10.0573 1.3509 1.8540 28 1 10.2750 1.9363 2.7472 29 8 9.0333 0.3882 2.1120 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9899 0.6024 -0.0013 38 1 6.0116 1.7696 -0.0010 39 1 4.8178 4.8809 -1.2476 40 1 6.4341 5.6259 -1.2469 41 1 6.1528 4.1109 -2.1383 42 1 6.1530 4.1073 2.1402 43 1 6.4343 5.6238 1.2512 44 1 4.8179 4.8788 1.2509 45 1 7.6264 1.9505 1.1492 46 1 9.1936 0.9104 -0.9569 47 1 10.4876 2.0794 -1.3351 48 1 13.5868 -1.8694 1.2826 49 1 11.4991 -0.2871 1.8126 50 1 12.2027 1.3171 1.4480 51 1 9.2312 -0.2096 2.8459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221077295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:14 Heat of formation + Delta-G solvation = -85.768342 kcal Electronic energy + Delta-G solvation = -31454.333902 eV Core-core repulsion = 27196.800627 eV Total energy + Delta-G solvation = -4257.533275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.88372 -39.57894 -38.06281 -36.49754 -35.22073 -34.80446 -34.08003 -33.16429 -31.68918 -31.01601 -28.65463 -27.36462 -27.09205 -26.34586 -24.79636 -23.38889 -21.99732 -21.19138 -20.62013 -20.11356 -19.46910 -18.82060 -17.62842 -17.13149 -16.78882 -16.13046 -15.92881 -15.47363 -15.17303 -14.91205 -14.88727 -14.50642 -14.38829 -14.13209 -13.97561 -13.28133 -13.27358 -13.17050 -13.00739 -12.81258 -12.54080 -12.44380 -12.31523 -12.06623 -11.91144 -11.81372 -11.50322 -11.41786 -11.38963 -11.21979 -11.12765 -10.89628 -10.68565 -10.43713 -10.29153 -10.10213 -9.88778 -9.59991 -9.46285 -9.28774 -9.08262 -8.82908 -8.72963 -6.90419 -5.74117 -3.14100 2.28462 2.78447 3.05236 3.15763 3.36949 3.41169 3.42469 3.97635 4.40466 4.47055 4.48470 4.60232 4.66087 4.85749 4.91574 4.99544 5.24832 5.26053 5.27167 5.30363 5.37332 5.43917 5.55283 5.62802 5.65617 5.66864 5.74157 5.75114 5.81933 5.84980 5.87538 5.96831 6.07689 6.19764 6.25185 6.28910 6.36890 6.43683 6.64471 6.67226 6.84981 7.20037 7.50324 7.61812 7.69000 7.80322 8.03144 8.25779 8.28590 8.43347 9.13334 9.74273 10.37292 11.30982 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.002760 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.169026 B =10143.414508 C =11523.630662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.138 3.862 4 N -0.748 5.748 5 C 0.711 3.289 6 O -0.585 6.585 7 N -0.741 5.741 8 C 0.182 3.818 9 C -0.150 4.150 10 C -0.159 4.159 11 C 0.513 3.487 12 O -0.528 6.528 13 N -0.705 5.705 14 C 0.141 3.859 15 H 0.101 0.899 16 C 0.133 3.867 17 N -0.596 5.596 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.927 5.927 22 Si 0.917 3.083 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.127 3.873 27 C 0.068 3.932 28 H 0.059 0.941 29 O -0.562 6.562 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.399 0.601 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.406 0.594 46 H 0.028 0.972 47 H 0.029 0.971 48 H 0.253 0.747 49 H 0.116 0.884 50 H 0.023 0.977 51 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.526 4.495 3.758 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.014 3.986 4 N -0.404 5.404 5 C 0.411 3.589 6 O -0.463 6.463 7 N -0.399 5.399 8 C 0.092 3.908 9 C -0.208 4.208 10 C -0.218 4.218 11 C 0.296 3.704 12 O -0.403 6.403 13 N -0.357 5.357 14 C 0.036 3.964 15 H 0.119 0.881 16 C 0.006 3.994 17 N -0.322 5.322 18 C -0.346 4.346 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.576 5.576 22 Si 0.747 3.253 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.001 3.999 27 C 0.007 3.993 28 H 0.077 0.923 29 O -0.368 6.368 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.234 0.766 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.242 0.758 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.064 0.936 49 H 0.133 0.867 50 H 0.041 0.959 51 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -20.643 6.152 2.827 21.725 hybrid contribution 1.097 -2.115 0.127 2.386 sum -19.546 4.037 2.954 20.176 Atomic orbital electron populations 1.21669 0.94522 1.02178 1.02309 1.21752 0.96940 0.95938 1.02937 1.21241 0.78106 0.96892 1.02340 1.45185 1.07379 1.07295 1.80539 1.15819 0.81345 0.84278 0.77460 1.90859 1.67838 1.29943 1.57672 1.45334 1.04995 1.08980 1.80590 1.20392 0.87027 0.84444 0.98915 1.22072 1.03711 1.00159 0.94885 1.22202 1.04815 0.99826 0.94910 1.20483 0.89756 0.81207 0.78905 1.90733 1.58929 1.47701 1.42936 1.45941 1.09253 1.28024 1.52488 1.22200 0.80121 0.97890 0.96200 0.88119 1.21572 0.92878 0.91050 0.93950 1.44270 1.45662 1.36138 1.06135 1.19043 1.16388 1.07099 0.92054 0.90473 1.24758 0.99540 0.99891 0.96481 1.69703 1.36440 1.40390 1.11110 0.86109 0.78899 0.81117 0.79132 1.21176 1.21556 1.21156 1.22606 0.90176 1.01269 0.85833 1.23570 0.90786 0.89617 0.95285 0.92289 1.86202 1.44451 1.48797 1.57398 0.92345 0.92354 0.92170 0.91215 0.91191 0.91617 0.91650 0.76837 0.76596 0.89575 0.90687 0.92397 0.92240 0.91088 0.88957 0.75820 0.95424 0.95357 0.93641 0.86672 0.95927 0.77212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.14 -0.76 6.05 -26.73 -0.16 -0.92 16 3 C 0.14 1.07 5.67 -4.04 -0.02 1.05 16 4 N -0.75 -6.47 5.56 -65.22 -0.36 -6.84 16 5 C 0.71 8.26 7.98 -86.92 -0.69 7.57 16 6 O -0.59 -8.43 12.55 5.29 0.07 -8.36 16 7 N -0.74 -8.16 4.86 -53.51 -0.26 -8.42 16 8 C 0.18 2.31 0.98 -132.97 -0.13 2.18 16 9 C -0.15 -1.97 7.93 37.16 0.29 -1.68 16 10 C -0.16 -1.86 8.38 37.16 0.31 -1.55 16 11 C 0.51 7.76 6.65 -10.99 -0.07 7.69 16 12 O -0.53 -9.82 15.82 5.56 0.09 -9.73 16 13 N -0.70 -10.31 4.78 -52.04 -0.25 -10.56 16 14 C 0.14 2.49 3.12 -66.10 -0.21 2.29 16 15 H 0.10 1.84 7.69 -51.93 -0.40 1.44 16 16 C 0.13 2.85 6.99 -3.06 -0.02 2.83 16 17 N -0.60 -14.90 3.39 -170.06 -0.58 -15.48 16 18 C -0.22 -5.98 10.27 -15.06 -0.15 -6.14 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 21 N -0.93 -25.96 10.09 55.49 0.56 -25.40 16 22 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.13 2.87 5.62 -2.52 -0.01 2.85 16 27 C 0.07 1.17 4.28 -24.58 -0.11 1.06 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 O -0.56 -8.76 12.23 -35.23 -0.43 -9.19 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 2.65 8.49 -40.82 -0.35 2.30 16 38 H 0.40 3.98 7.25 -40.82 -0.30 3.69 16 39 H 0.09 1.16 6.16 -51.93 -0.32 0.84 16 40 H 0.07 0.98 7.87 -51.93 -0.41 0.58 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 1.16 6.16 -51.92 -0.32 0.84 16 45 H 0.41 5.27 6.31 -40.82 -0.26 5.01 16 46 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.12 2.88 5.87 -51.93 -0.30 2.57 16 50 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.38 4.74 9.12 45.56 0.42 5.15 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -32.96 404.44 -8.50 -41.45 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -7.70 Total: 13.28 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: -0.70 Total: 16.44 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -0.89 Total: -66.69 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.28 Total: -27.28 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.96 -8.50 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221077295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.314 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds