Wall clock time and date at job start Wed Apr 1 2020 02:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 N 1.46506 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00072 * 180.02562 * 4 3 2 6 6 O 1.21583 * 120.00212 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99868 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00109 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47010 * 300.00045 * 8 7 5 10 10 C 1.52995 * 109.47128 * 60.00223 * 8 7 5 11 11 C 1.50697 * 109.47280 * 180.02562 * 8 7 5 12 12 O 1.21278 * 120.00232 * 145.00018 * 11 8 7 13 13 N 1.34774 * 120.00152 * 324.99985 * 11 8 7 14 14 C 1.46496 * 120.00371 * 179.97438 * 13 11 8 15 15 H 1.08999 * 110.64182 * 36.68681 * 14 13 11 16 16 C 1.54323 * 110.72185 * 273.54853 * 14 13 11 17 17 N 1.47028 * 107.27383 * 219.44135 * 16 14 13 18 18 C 1.36926 * 125.65137 * 178.97459 * 17 16 14 19 19 H 1.08000 * 120.00041 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00344 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99528 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00529 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46860 * 59.99619 * 22 20 18 24 24 H 1.48493 * 109.47445 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46904 * 300.00167 * 22 20 18 26 26 C 1.47432 * 108.69962 * 358.93996 * 17 16 14 27 27 C 1.54916 * 104.83214 * 24.12772 * 26 17 16 28 28 H 1.08994 * 110.99947 * 204.91412 * 27 26 17 29 29 O 1.42898 * 111.00171 * 81.06639 * 27 26 17 30 30 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 31 31 H 1.09004 * 109.47298 * 59.99717 * 1 2 3 32 32 H 1.09004 * 109.47552 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46997 * 240.00426 * 2 1 3 34 34 H 1.08996 * 109.47452 * 120.00000 * 2 1 3 35 35 H 1.09001 * 109.47289 * 60.00050 * 3 2 1 36 36 H 1.09004 * 109.47261 * 300.00306 * 3 2 1 37 37 H 0.97001 * 119.99251 * 0.02562 * 4 3 2 38 38 H 0.97006 * 119.99964 * 0.02562 * 7 5 4 39 39 H 1.08998 * 109.46910 * 59.99938 * 9 8 7 40 40 H 1.08997 * 109.47050 * 179.97438 * 9 8 7 41 41 H 1.08998 * 109.46964 * 299.99694 * 9 8 7 42 42 H 1.09003 * 109.47500 * 59.99839 * 10 8 7 43 43 H 1.08997 * 109.47264 * 180.02562 * 10 8 7 44 44 H 1.09008 * 109.46988 * 300.00292 * 10 8 7 45 45 H 0.97005 * 119.99727 * 0.02562 * 13 11 8 46 46 H 1.09001 * 109.88109 * 338.85456 * 16 14 13 47 47 H 1.08998 * 109.88726 * 99.87056 * 16 14 13 48 48 H 0.96994 * 119.99699 * 179.97438 * 21 20 18 49 49 H 1.08997 * 110.36491 * 142.96669 * 26 17 16 50 50 H 1.08994 * 110.36513 * 265.17626 * 26 17 16 51 51 H 0.96697 * 114.00649 * 67.80508 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5710 3.6627 0.0002 7 7 5.5266 2.6097 -0.0003 8 6 6.2591 3.8784 0.0008 9 6 5.8895 4.6817 -1.2479 10 6 5.8896 4.6796 1.2507 11 6 7.7407 3.6030 -0.0001 12 8 8.4939 4.3387 -0.6021 13 7 8.2289 2.5392 0.6680 14 6 9.6691 2.2711 0.6667 15 1 10.2334 3.2032 0.6971 16 6 10.0672 1.4319 -0.5657 17 7 11.0748 0.4570 -0.1230 18 6 11.6707 -0.4894 -0.9130 19 1 11.4092 -0.5629 -1.9583 20 6 12.6110 -1.3546 -0.3704 21 7 12.9301 -1.2647 0.9034 22 14 13.4235 -2.6461 -1.4479 23 1 14.1487 -1.9789 -2.5589 24 1 14.3827 -3.4365 -0.6354 25 1 12.3853 -3.5492 -2.0064 26 6 11.3379 0.6677 1.3123 27 6 10.0573 1.3509 1.8540 28 1 10.2750 1.9363 2.7472 29 8 9.0333 0.3882 2.1120 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9899 0.6024 -0.0013 38 1 6.0116 1.7696 -0.0010 39 1 4.8178 4.8809 -1.2476 40 1 6.4341 5.6259 -1.2469 41 1 6.1528 4.1109 -2.1383 42 1 6.1530 4.1073 2.1402 43 1 6.4343 5.6238 1.2512 44 1 4.8179 4.8788 1.2509 45 1 7.6264 1.9505 1.1492 46 1 9.1936 0.9104 -0.9569 47 1 10.4876 2.0794 -1.3351 48 1 13.5868 -1.8694 1.2826 49 1 11.4991 -0.2871 1.8126 50 1 12.2027 1.3171 1.4480 51 1 9.2312 -0.2096 2.8459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221077295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:13 Heat of formation + Delta-G solvation = -112.714026 kcal Electronic energy + Delta-G solvation = -31455.502354 eV Core-core repulsion = 27196.800627 eV Total energy + Delta-G solvation = -4258.701728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.97049 -40.73510 -39.52247 -37.33674 -36.36372 -36.16626 -35.53747 -33.88778 -33.54800 -31.86384 -30.37843 -28.85987 -28.26032 -27.01625 -26.54687 -24.64873 -22.57324 -22.42473 -22.00806 -21.60182 -20.64902 -19.82558 -19.13471 -18.46739 -18.20269 -16.96287 -16.88782 -16.80140 -16.68775 -16.25082 -15.88351 -15.72258 -15.65314 -15.37092 -15.08789 -14.76142 -14.64309 -14.40639 -14.08411 -13.78778 -13.57087 -13.45595 -13.36661 -13.21163 -13.18430 -12.97334 -12.85244 -12.78949 -12.72405 -12.37611 -12.26115 -12.16710 -11.97498 -11.89383 -11.86378 -11.70435 -11.37410 -10.91387 -10.74578 -10.69487 -10.41350 -10.20310 -9.86903 -8.90008 -7.80545 -5.23543 1.22976 1.46973 1.49277 1.55527 1.74247 1.88717 2.14069 2.48849 3.15921 3.18461 3.30536 3.44250 3.68294 3.84032 3.89035 3.92092 3.97075 3.98893 4.13723 4.30181 4.40394 4.47951 4.59447 4.69570 4.72249 4.73494 4.75057 4.80020 4.82431 4.85972 4.88938 4.92503 5.14095 5.19848 5.23247 5.29328 5.30793 5.35243 5.38954 5.41672 5.47470 5.58687 5.72400 5.88639 6.26215 6.41953 6.89161 6.99674 7.08111 7.09032 7.55093 7.73678 8.35955 9.21164 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.002760 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.169026 B =10143.414508 C =11523.630662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.138 3.862 4 N -0.736 5.736 5 C 0.708 3.292 6 O -0.614 6.614 7 N -0.734 5.734 8 C 0.189 3.811 9 C -0.145 4.145 10 C -0.153 4.153 11 C 0.517 3.483 12 O -0.562 6.562 13 N -0.690 5.690 14 C 0.152 3.848 15 H 0.098 0.902 16 C 0.133 3.867 17 N -0.615 5.615 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.059 4.059 21 N -0.945 5.945 22 Si 0.978 3.022 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.126 3.874 27 C 0.092 3.908 28 H 0.095 0.905 29 O -0.561 6.561 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.410 0.590 38 H 0.405 0.595 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.417 0.583 46 H 0.026 0.974 47 H 0.009 0.991 48 H 0.250 0.750 49 H 0.092 0.908 50 H -0.001 1.001 51 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.870 3.702 4.553 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.014 3.986 4 N -0.392 5.392 5 C 0.408 3.592 6 O -0.494 6.494 7 N -0.393 5.393 8 C 0.099 3.901 9 C -0.204 4.204 10 C -0.211 4.211 11 C 0.302 3.698 12 O -0.439 6.439 13 N -0.343 5.343 14 C 0.046 3.954 15 H 0.116 0.884 16 C 0.006 3.994 17 N -0.341 5.341 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.252 4.252 21 N -0.594 5.594 22 Si 0.807 3.193 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.000 4.000 27 C 0.032 3.968 28 H 0.112 0.888 29 O -0.369 6.369 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.245 0.755 38 H 0.242 0.758 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.255 0.745 46 H 0.044 0.956 47 H 0.027 0.973 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.017 0.983 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -22.028 5.312 3.648 22.951 hybrid contribution 1.495 -1.877 -0.156 2.404 sum -20.533 3.435 3.492 21.110 Atomic orbital electron populations 1.21680 0.94041 1.02688 1.02305 1.21698 0.97244 0.94283 1.03477 1.21309 0.77392 0.98336 1.01536 1.45138 1.07786 1.06945 1.79364 1.15940 0.81292 0.84626 0.77354 1.90845 1.68341 1.31205 1.58999 1.45171 1.04908 1.08630 1.80572 1.20238 0.85304 0.85205 0.99313 1.22017 1.03411 1.00077 0.94847 1.22152 1.04376 0.99977 0.94590 1.20842 0.90519 0.80510 0.77887 1.90727 1.60034 1.48880 1.44299 1.45736 1.08066 1.28087 1.52397 1.21880 0.81746 0.97163 0.94578 0.88446 1.21621 0.91875 0.90577 0.95349 1.44521 1.46114 1.36294 1.07164 1.19329 1.17111 1.08055 0.92469 0.90917 1.25518 1.00152 1.01702 0.97801 1.69927 1.36518 1.40794 1.12169 0.85156 0.77922 0.78738 0.77513 1.21013 1.21543 1.20292 1.22515 0.92413 1.00191 0.84861 1.23238 0.88284 0.89383 0.95934 0.88774 1.86167 1.43300 1.48982 1.58486 0.92285 0.92506 0.91375 0.90804 0.90453 0.92254 0.92677 0.75463 0.75824 0.89804 0.90878 0.93197 0.91082 0.90755 0.89558 0.74452 0.95583 0.97306 0.94070 0.89045 0.98278 0.75263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.13 -1.17 6.05 30.59 0.19 -0.99 16 3 C 0.14 1.95 5.67 86.38 0.49 2.44 16 4 N -0.74 -11.46 5.56 -478.53 -2.66 -14.12 16 5 C 0.71 15.41 7.98 179.06 1.43 16.83 16 6 O -0.61 -17.09 12.55 -3.98 -0.05 -17.14 16 7 N -0.73 -14.91 4.86 -441.46 -2.15 -17.05 16 8 C 0.19 4.55 0.98 2.86 0.00 4.55 16 9 C -0.15 -3.74 7.93 71.98 0.57 -3.17 16 10 C -0.15 -3.30 8.38 71.98 0.60 -2.69 16 11 C 0.52 14.98 6.65 87.66 0.58 15.56 16 12 O -0.56 -20.59 15.82 -3.02 -0.05 -20.64 16 13 N -0.69 -18.85 4.78 -436.94 -2.09 -20.93 16 14 C 0.15 5.20 3.12 46.18 0.14 5.35 16 15 H 0.10 3.47 7.69 -2.39 -0.02 3.45 16 16 C 0.13 5.70 6.99 86.73 0.61 6.31 16 17 N -0.61 -31.05 3.39 -691.96 -2.35 -33.39 16 18 C -0.24 -13.40 10.27 84.04 0.86 -12.54 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 20 C -0.06 -3.24 5.49 84.86 0.47 -2.78 16 21 N -0.94 -53.36 10.09 21.65 0.22 -53.14 16 22 Si 0.98 44.70 29.55 68.60 2.03 46.72 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.13 5.68 5.62 86.86 0.49 6.17 16 27 C 0.09 2.99 4.28 31.99 0.14 3.12 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 O -0.56 -15.88 12.23 -148.98 -1.82 -17.71 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.41 4.51 8.49 -92.71 -0.79 3.72 16 38 H 0.41 7.20 7.25 -92.70 -0.67 6.53 16 39 H 0.08 2.22 6.16 -2.39 -0.01 2.21 16 40 H 0.07 1.89 7.87 -2.39 -0.02 1.87 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 2.04 6.16 -2.38 -0.01 2.02 16 45 H 0.42 9.64 6.31 -92.70 -0.59 9.06 16 46 H 0.03 1.12 8.03 -2.39 -0.02 1.11 16 47 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 49 H 0.09 4.60 5.87 -2.39 -0.01 4.59 16 50 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 51 H 0.40 8.70 9.12 -74.06 -0.68 8.02 16 Total: -1.00 -71.50 404.44 -3.38 -74.88 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -1.74 Total: 34.84 kcal Atomic # 6 Polarization: 30.39 SS G_CDS: 7.28 Total: 37.67 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -9.03 Total: -138.64 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -1.92 Total: -55.48 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.50 -3.38 -74.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221077295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.831 kcal (2) G-P(sol) polarization free energy of solvation -71.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds