Wall clock time and date at job start Wed Apr 1 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 H 1.09002 * 109.47329 * 54.99438 * 3 2 1 5 5 C 1.53006 * 109.47279 * 294.99922 * 3 2 1 6 6 C 1.53000 * 109.47275 * 174.99781 * 3 2 1 7 7 N 1.46899 * 109.47117 * 184.99731 * 6 3 2 8 8 C 1.46902 * 111.00049 * 66.04589 * 7 6 3 9 9 C 1.46901 * 111.00001 * 189.99940 * 7 6 3 10 10 C 1.53004 * 109.47273 * 169.99976 * 9 7 6 11 11 C 1.53346 * 109.41904 * 295.13166 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47124 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00170 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99808 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99850 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00032 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99655 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47451 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47165 * 119.99882 * 22 20 18 25 25 H 1.48501 * 109.46985 * 240.00093 * 22 20 18 26 26 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 27 27 C 1.53034 * 109.46014 * 175.00033 * 10 9 7 28 28 H 1.08995 * 109.47261 * 300.00366 * 1 2 3 29 29 H 1.09004 * 109.47034 * 60.00176 * 1 2 3 30 30 H 1.08993 * 109.46900 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47702 * 239.99936 * 2 1 3 32 32 H 1.09004 * 109.47034 * 119.99824 * 2 1 3 33 33 H 1.09002 * 109.46545 * 299.99996 * 5 3 2 34 34 H 1.08994 * 109.46849 * 59.99798 * 5 3 2 35 35 H 1.09002 * 109.47318 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47079 * 65.00286 * 6 3 2 37 37 H 1.08999 * 109.47332 * 304.99915 * 6 3 2 38 38 H 1.08997 * 109.47460 * 183.94816 * 8 7 6 39 39 H 1.08999 * 109.47370 * 303.95834 * 8 7 6 40 40 H 1.09001 * 109.46801 * 63.95522 * 8 7 6 41 41 H 1.09001 * 109.47284 * 50.00434 * 9 7 6 42 42 H 1.08997 * 109.47424 * 290.00267 * 9 7 6 43 43 H 1.09001 * 109.45799 * 55.03195 * 10 9 7 44 44 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 45 45 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 46 46 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 47 47 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 48 48 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 49 49 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 50 50 H 0.96996 * 119.99581 * 180.02562 * 21 20 18 51 51 H 1.08994 * 109.58580 * 173.39910 * 26 13 12 52 52 H 1.09006 * 109.57831 * 293.67403 * 26 13 12 53 53 H 1.08994 * 109.50232 * 61.43679 * 27 10 9 54 54 H 1.09000 * 109.49784 * 301.33744 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5648 1.4443 0.1258 7 7 4.0445 2.8276 0.2461 8 6 3.5894 3.4351 1.5038 9 6 5.5077 2.8892 0.1310 10 6 5.9488 4.3494 0.0104 11 6 5.4102 4.9382 -1.2991 12 6 5.8271 6.4090 -1.3977 13 7 7.2858 6.5010 -1.2477 14 6 8.0325 7.1362 -2.1726 15 8 7.5013 7.6382 -3.1404 16 6 9.5275 7.2226 -2.0042 17 16 10.2405 8.1286 -3.3995 18 6 11.9452 8.0809 -2.9565 19 1 12.2532 7.5860 -2.0473 20 6 12.8924 8.6784 -3.7765 21 7 12.5171 9.2811 -4.8849 22 14 14.6997 8.6272 -3.3071 23 1 14.8575 7.8961 -2.0242 24 1 15.4680 7.9323 -4.3711 25 1 15.2104 10.0130 -3.1525 26 6 7.9150 5.8879 -0.0700 27 6 7.4774 4.4223 0.0159 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0699 1.5875 -2.1492 34 1 0.5490 2.1252 -1.3969 35 1 1.9990 3.1541 -1.3076 36 1 4.0030 0.9836 -0.7596 37 1 3.8571 0.8801 1.0114 38 1 3.8988 4.4798 1.5356 39 1 2.5026 3.3760 1.5635 40 1 4.0291 2.9003 2.3456 41 1 5.8260 2.3393 -0.7547 42 1 5.9610 2.4447 1.0170 43 1 5.5551 4.9183 0.8526 44 1 4.3227 4.8665 -1.3139 45 1 5.8232 4.3856 -2.1430 46 1 5.3417 6.9803 -0.6064 47 1 5.5338 6.8076 -2.3688 48 1 9.7591 7.7442 -1.0755 49 1 9.9482 6.2175 -1.9711 50 1 13.1791 9.6983 -5.4581 51 1 8.9994 5.9405 -0.1661 52 1 7.6017 6.4183 0.8293 53 1 7.8709 3.8744 -0.8402 54 1 7.8593 3.9820 0.9370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267718377.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:39 Heat of formation + Delta-G solvation = -75.160217 kcal Electronic energy + Delta-G solvation = -27955.944858 eV Core-core repulsion = 24245.164801 eV Total energy + Delta-G solvation = -3710.780058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19737 -39.66089 -38.27058 -36.32697 -34.58762 -34.01800 -32.46745 -30.85471 -30.33541 -28.45694 -27.98126 -27.63620 -25.90051 -24.18231 -24.00047 -22.35386 -21.26433 -20.60183 -20.27534 -19.48192 -18.11775 -16.96528 -16.87469 -16.80377 -16.57289 -16.37179 -15.93112 -15.77706 -15.64542 -15.27793 -14.88268 -14.77736 -14.49613 -14.31210 -14.22567 -13.98359 -13.90872 -13.51611 -13.34358 -13.15952 -13.13104 -12.91554 -12.85019 -12.69717 -12.65162 -12.57894 -12.48047 -12.17358 -12.15570 -11.87561 -11.69427 -11.52541 -11.41473 -11.32475 -11.25066 -11.18731 -11.15880 -10.80557 -10.25514 -9.64330 -9.15180 -8.67648 -8.34630 -6.13211 1.26167 1.41627 1.46426 1.57707 1.59007 2.14237 2.27444 2.97348 2.99574 3.26090 3.66730 3.76334 3.88651 3.92450 3.98298 4.05593 4.15582 4.21396 4.25169 4.36695 4.41295 4.42528 4.44392 4.48187 4.52751 4.61276 4.67809 4.70081 4.73893 4.79234 4.81764 4.87273 4.90348 4.92145 4.97372 5.03324 5.07155 5.13279 5.17789 5.19988 5.22891 5.25060 5.27499 5.33444 5.41866 5.51187 5.56512 5.61469 5.66624 6.20002 6.20409 6.21662 6.32888 7.06506 7.16651 8.74992 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.026807 B = 0.001770 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.259921 B =15817.468108 C =16112.053587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.084 4.084 4 H 0.071 0.929 5 C -0.135 4.135 6 C 0.062 3.938 7 N -0.544 5.544 8 C 0.020 3.980 9 C 0.066 3.934 10 C -0.074 4.074 11 C -0.105 4.105 12 C 0.109 3.891 13 N -0.606 5.606 14 C 0.530 3.470 15 O -0.570 6.570 16 C -0.122 4.122 17 S -0.155 6.155 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.101 3.899 27 C -0.124 4.124 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.271 0.729 51 H 0.086 0.914 52 H 0.091 0.909 53 H 0.056 0.944 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.989 -19.705 18.655 34.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.102 4.102 4 H 0.089 0.911 5 C -0.193 4.193 6 C -0.066 4.066 7 N -0.267 5.267 8 C -0.128 4.128 9 C -0.062 4.062 10 C -0.093 4.093 11 C -0.143 4.143 12 C -0.013 4.013 13 N -0.340 5.340 14 C 0.318 3.682 15 O -0.449 6.449 16 C -0.273 4.273 17 S 0.073 5.927 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.021 4.021 27 C -0.163 4.163 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.080 0.920 51 H 0.105 0.895 52 H 0.109 0.891 53 H 0.075 0.925 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.945 -18.619 16.715 33.281 hybrid contribution 1.983 -0.747 1.331 2.503 sum -19.961 -19.367 18.046 33.154 Atomic orbital electron populations 1.21794 0.95443 1.01756 1.01936 1.21535 0.96314 0.95892 1.01881 1.21152 0.94054 0.96166 0.98866 0.91055 1.21712 1.00406 1.00809 0.96348 1.22161 0.95652 0.88449 1.00345 1.61913 1.10674 1.18425 1.35726 1.22488 1.01176 1.00022 0.89067 1.22080 0.87211 0.96182 1.00690 1.21152 0.94341 0.95875 0.97921 1.21784 1.02057 0.92964 0.97471 1.21709 0.78774 0.98463 1.02388 1.48146 1.07778 1.54836 1.23220 1.20154 0.88576 0.77460 0.82025 1.90665 1.74091 1.48203 1.31976 1.23359 0.94624 1.05173 1.04149 1.85613 1.05275 1.72090 1.29752 1.23229 0.91867 1.42287 1.11885 0.89872 1.26143 1.05047 0.93751 0.94208 1.70196 1.36422 1.34954 1.13244 0.84890 0.75796 0.78357 0.78796 1.17918 1.19933 1.19914 1.22014 0.98769 0.94116 0.87202 1.21921 0.95866 0.95063 1.03437 0.92705 0.92588 0.92522 0.92218 0.91970 0.93767 0.92869 0.92560 0.91466 0.94893 0.90872 0.90992 0.95611 0.91601 0.94035 0.89664 0.88977 0.93751 0.89985 0.91940 0.87478 0.87618 0.91997 0.89530 0.89121 0.92472 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 71.98 0.70 -0.65 16 2 C -0.12 -1.13 5.40 30.59 0.17 -0.96 16 3 C -0.08 -0.90 2.31 -10.79 -0.02 -0.93 16 4 H 0.07 0.77 6.26 -2.39 -0.01 0.75 16 5 C -0.14 -1.72 8.84 71.98 0.64 -1.09 16 6 C 0.06 0.73 4.35 86.30 0.38 1.10 16 7 N -0.54 -6.78 3.65 -922.44 -3.37 -10.15 16 8 C 0.02 0.21 9.14 127.69 1.17 1.38 16 9 C 0.07 0.85 4.35 86.30 0.38 1.23 16 10 C -0.07 -1.04 2.07 -10.66 -0.02 -1.06 16 11 C -0.10 -1.99 5.29 30.78 0.16 -1.83 16 12 C 0.11 2.65 6.42 86.36 0.55 3.21 16 13 N -0.61 -17.02 2.97 -818.91 -2.43 -19.46 16 14 C 0.53 20.97 7.72 87.66 0.68 21.65 16 15 O -0.57 -28.00 15.27 -3.03 -0.05 -28.04 16 16 C -0.12 -5.04 4.50 71.24 0.32 -4.72 16 17 S -0.15 -8.79 20.57 -56.49 -1.16 -9.96 16 18 C -0.54 -31.45 9.50 67.96 0.65 -30.80 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 22 Si 1.00 43.79 29.55 68.60 2.03 45.81 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.10 1.95 6.34 86.36 0.55 2.50 16 27 C -0.12 -1.86 5.36 30.67 0.16 -1.69 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.52 6.57 -2.38 -0.02 0.51 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.62 6.56 -2.39 -0.02 0.61 16 35 H 0.06 0.84 7.75 -2.39 -0.02 0.83 16 36 H 0.07 0.88 7.93 -2.39 -0.02 0.86 16 37 H 0.03 0.37 8.12 -2.39 -0.02 0.36 16 38 H 0.07 0.74 6.37 -2.39 -0.02 0.72 16 39 H 0.07 0.71 6.21 -2.39 -0.01 0.69 16 40 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.07 0.98 7.93 -2.39 -0.02 0.96 16 42 H 0.04 0.48 8.12 -2.39 -0.02 0.46 16 43 H 0.09 1.05 6.34 -2.39 -0.02 1.03 16 44 H 0.09 1.64 7.73 -2.39 -0.02 1.62 16 45 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.06 1.91 7.00 -2.39 -0.02 1.90 16 48 H 0.11 3.99 7.94 -2.39 -0.02 3.97 16 49 H 0.11 3.97 7.69 -2.40 -0.02 3.95 16 50 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 51 H 0.09 1.75 5.93 -2.39 -0.01 1.73 16 52 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -75.12 423.45 3.05 -72.07 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.84 Total: 17.44 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 6.91 Total: -11.45 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -5.52 Total: -85.87 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.04 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.96 kcal Total: -75.12 3.05 -72.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267718377.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.093 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds