Wall clock time and date at job start Wed Apr 1 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47348 * 2 1 4 4 C 1.52998 * 109.47157 * 184.36416 * 3 2 1 5 5 H 1.09000 * 109.47182 * 305.77959 * 4 3 2 6 6 C 1.50700 * 109.47145 * 65.77560 * 4 3 2 7 7 O 1.21284 * 119.99560 * 33.96750 * 6 4 3 8 8 N 1.34779 * 120.00402 * 213.96954 * 6 4 3 9 9 C 1.46736 * 125.32896 * 354.98568 * 8 6 4 10 10 C 1.54090 * 106.63864 * 161.58408 * 9 8 6 11 11 H 1.09000 * 113.50011 * 151.36369 * 10 9 8 12 12 C 1.53963 * 109.44766 * 278.64255 * 10 9 8 13 13 N 1.46773 * 106.63275 * 138.17035 * 12 10 9 14 14 C 1.36935 * 125.33860 * 161.51336 * 13 12 10 15 15 H 1.07994 * 120.00143 * 5.73881 * 14 13 12 16 16 C 1.38812 * 120.00058 * 185.73693 * 14 13 12 17 17 N 1.31621 * 119.99805 * 6.86495 * 16 14 13 18 18 Si 1.86799 * 120.00355 * 186.86805 * 16 14 13 19 19 H 1.48497 * 109.47176 * 94.98757 * 18 16 14 20 20 H 1.48502 * 109.47157 * 214.98742 * 18 16 14 21 21 H 1.48499 * 109.46814 * 334.98942 * 18 16 14 22 22 C 1.46671 * 109.32097 * 341.48598 * 13 12 10 23 23 C 1.53724 * 107.94479 * 0.54237 * 22 13 12 24 24 H 1.08991 * 113.06013 * 140.00295 * 23 22 13 25 25 C 1.46637 * 125.32808 * 175.28631 * 8 6 4 26 26 C 1.50694 * 109.47259 * 185.77518 * 4 3 2 27 27 C 1.38232 * 120.00537 * 299.73150 * 26 4 3 28 28 C 1.38228 * 120.00608 * 179.76765 * 27 26 4 29 29 C 1.38241 * 119.99833 * 0.50213 * 28 27 26 30 30 C 1.38242 * 119.99888 * 359.75255 * 29 28 27 31 31 C 1.38237 * 119.99958 * 359.97438 * 30 29 28 32 32 H 1.08998 * 109.47491 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46726 * 300.00101 * 1 2 3 34 34 H 1.09000 * 109.47081 * 59.99251 * 1 2 3 35 35 H 1.08994 * 109.46711 * 239.99775 * 2 1 3 36 36 H 1.09004 * 109.46794 * 120.00371 * 2 1 3 37 37 H 1.09009 * 109.46980 * 64.37252 * 3 2 1 38 38 H 1.08993 * 109.47106 * 304.36848 * 3 2 1 39 39 H 1.09007 * 110.00716 * 281.00937 * 9 8 6 40 40 H 1.09004 * 110.01448 * 42.37483 * 9 8 6 41 41 H 1.09001 * 110.02859 * 257.46669 * 12 10 9 42 42 H 1.09003 * 110.02443 * 18.87775 * 12 10 9 43 43 H 0.97004 * 120.00143 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.76777 * 240.92078 * 22 13 12 45 45 H 1.09000 * 109.77007 * 120.16164 * 22 13 12 46 46 H 1.08999 * 109.76348 * 300.44200 * 25 8 6 47 47 H 1.09008 * 109.75670 * 61.16264 * 25 8 6 48 48 H 1.08004 * 119.99569 * 359.97438 * 27 26 4 49 49 H 1.07997 * 120.00532 * 180.23200 * 28 27 26 50 50 H 1.07993 * 120.00385 * 179.72570 * 29 28 27 51 51 H 1.07999 * 119.99845 * 179.97438 * 30 29 28 52 52 H 1.07995 * 120.00147 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5661 1.4438 -0.1098 5 1 3.9878 0.8223 0.6802 6 6 3.9736 0.8943 -1.4525 7 8 3.2825 1.1013 -2.4275 8 7 5.1060 0.1730 -1.5701 9 6 6.0789 -0.0601 -0.4966 10 6 6.9240 -1.2759 -0.9233 11 1 7.9362 -1.2650 -0.5192 12 6 6.1593 -2.5717 -0.5966 13 7 6.3456 -3.4696 -1.7426 14 6 6.1477 -4.8245 -1.7275 15 1 5.7402 -5.3010 -0.8482 16 6 6.4708 -5.5856 -2.8425 17 7 7.0909 -5.0295 -3.8617 18 14 6.0255 -7.3989 -2.8967 19 1 4.7268 -7.5690 -3.5964 20 1 7.0818 -8.1465 -3.6252 21 1 5.9139 -7.9228 -1.5117 22 6 6.7763 -2.6880 -2.9066 23 6 6.8825 -1.2162 -2.4758 24 1 7.7479 -0.7083 -2.9012 25 6 5.5618 -0.4967 -2.7924 26 6 4.0788 2.8537 0.0326 27 6 3.6832 3.8271 -0.8656 28 6 4.1496 5.1214 -0.7322 29 6 5.0200 5.4402 0.2934 30 6 5.4198 4.4656 1.1886 31 6 4.9488 3.1725 1.0585 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 1.7421 1.9332 0.9266 38 1 1.6143 1.9784 -0.8482 39 1 6.7163 0.8157 -0.3743 40 1 5.5596 -0.2771 0.4369 41 1 6.5667 -3.0282 0.3054 42 1 5.0997 -2.3555 -0.4602 43 1 7.3164 -5.5612 -4.6410 44 1 6.0438 -2.7858 -3.7078 45 1 7.7481 -3.0428 -3.2498 46 1 4.8152 -1.2221 -3.1155 47 1 5.7234 0.2411 -3.5784 48 1 3.0069 3.5770 -1.6698 49 1 3.8376 5.8828 -1.4318 50 1 5.3879 6.4504 0.3951 51 1 6.1000 4.7146 1.9897 52 1 5.2615 2.4110 1.7576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271892657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:38 Heat of formation + Delta-G solvation = -11.377861 kcal Electronic energy + Delta-G solvation = -30979.295032 eV Core-core repulsion = 27135.836833 eV Total energy + Delta-G solvation = -3843.458199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.86410 -40.46473 -39.31865 -36.71200 -36.34153 -34.12596 -33.37682 -31.82374 -31.72390 -31.27897 -29.59600 -27.56259 -27.12112 -25.64039 -24.39081 -23.52875 -22.43389 -22.22372 -21.92086 -20.86562 -19.97932 -18.90091 -18.28374 -17.82088 -17.13991 -16.74357 -16.60790 -16.25872 -15.93295 -15.67578 -15.56659 -15.26666 -14.76763 -14.66275 -14.59526 -14.29490 -14.11295 -13.85192 -13.68845 -13.56892 -13.46390 -13.28223 -13.23118 -13.11497 -12.75208 -12.73423 -12.66453 -12.43498 -12.11894 -12.00279 -11.89605 -11.85624 -11.68473 -11.66120 -11.60733 -11.52720 -11.44668 -10.89634 -10.72630 -9.78550 -9.65533 -9.59159 -8.88401 -7.84496 -5.22831 0.40162 0.53640 1.43918 1.46107 1.54603 1.59643 1.99209 2.48147 2.88336 3.30348 3.36437 3.48265 3.60116 3.69581 3.81716 3.86177 3.93568 4.05764 4.12806 4.19578 4.21391 4.22813 4.29467 4.34815 4.37670 4.52912 4.57249 4.62384 4.67404 4.71673 4.75128 4.80128 4.83821 4.87446 4.90371 4.99789 5.00902 5.10688 5.13244 5.19304 5.20110 5.25694 5.30700 5.36807 5.38540 5.45683 5.56932 5.60385 5.66384 5.70231 5.77534 6.13548 6.21345 6.53728 7.09619 7.12310 7.78775 8.40670 9.22906 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.003029 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.268514 B = 9242.856629 C =10209.708994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.093 4.093 4 C -0.055 4.055 5 H 0.118 0.882 6 C 0.533 3.467 7 O -0.583 6.583 8 N -0.609 5.609 9 C 0.114 3.886 10 C -0.094 4.094 11 H 0.128 0.872 12 C 0.139 3.861 13 N -0.622 5.622 14 C -0.241 4.241 15 H 0.082 0.918 16 C -0.065 4.065 17 N -0.948 5.948 18 Si 0.975 3.025 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.264 1.264 22 C 0.192 3.808 23 C -0.109 4.109 24 H 0.115 0.885 25 C 0.127 3.873 26 C -0.086 4.086 27 C -0.125 4.125 28 C -0.130 4.130 29 C -0.122 4.122 30 C -0.120 4.120 31 C -0.110 4.110 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.012 0.988 43 H 0.246 0.754 44 H -0.011 1.011 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.131 0.869 50 H 0.144 0.856 51 H 0.150 0.850 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 21.353 14.677 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.131 4.131 4 C -0.076 4.076 5 H 0.136 0.864 6 C 0.323 3.677 7 O -0.463 6.463 8 N -0.342 5.342 9 C -0.008 4.008 10 C -0.114 4.114 11 H 0.146 0.854 12 C 0.014 3.986 13 N -0.348 5.348 14 C -0.371 4.371 15 H 0.099 0.901 16 C -0.258 4.258 17 N -0.596 5.596 18 Si 0.803 3.197 19 H -0.221 1.221 20 H -0.219 1.219 21 H -0.189 1.189 22 C 0.067 3.933 23 C -0.128 4.128 24 H 0.133 0.867 25 C 0.004 3.996 26 C -0.086 4.086 27 C -0.144 4.144 28 C -0.148 4.148 29 C -0.140 4.140 30 C -0.138 4.138 31 C -0.128 4.128 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.056 0.944 44 H 0.008 0.992 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.079 0.921 48 H 0.122 0.878 49 H 0.149 0.851 50 H 0.161 0.839 51 H 0.168 0.832 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.951 21.320 14.061 25.843 hybrid contribution -0.435 -1.552 -1.302 2.072 sum -4.386 19.768 12.760 23.934 Atomic orbital electron populations 1.21704 0.94608 1.01850 1.02185 1.21551 0.97266 0.96536 1.01094 1.21504 0.91145 0.97199 1.03216 1.20357 0.98501 0.94776 0.93921 0.86404 1.20738 0.78615 0.76853 0.91459 1.90647 1.53783 1.60327 1.41557 1.48377 1.22275 1.50505 1.12998 1.22180 0.90505 0.97671 0.90414 1.22986 1.00627 0.93613 0.94127 0.85425 1.21460 0.96358 0.90077 0.90684 1.44520 1.79767 1.03077 1.07477 1.19420 1.34856 0.82697 1.00084 0.90056 1.25633 1.00978 1.02353 0.96881 1.70165 1.45869 1.35961 1.07650 0.85111 0.76723 0.79905 0.77943 1.22100 1.21921 1.18884 1.20785 0.97335 0.86821 0.88372 1.22947 0.96553 0.95938 0.97404 0.86727 1.21647 0.95338 0.94822 0.87819 1.19425 0.99156 0.92870 0.97197 1.21140 1.00387 0.94018 0.98818 1.21344 0.98295 0.95987 0.99196 1.21511 0.97117 1.00757 0.94627 1.21493 0.99925 0.92635 0.99732 1.21350 0.96084 0.97964 0.97357 0.92775 0.90748 0.93575 0.95459 0.90616 0.88604 0.92414 0.88441 0.88464 0.93543 0.97035 0.94445 0.99242 0.94958 0.95124 0.92133 0.87840 0.85133 0.83858 0.83196 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.13 -3.02 5.82 30.59 0.18 -2.84 16 3 C -0.09 -2.04 4.17 30.59 0.13 -1.91 16 4 C -0.05 -1.21 1.97 -12.29 -0.02 -1.24 16 5 H 0.12 2.07 6.21 -2.39 -0.01 2.06 16 6 C 0.53 16.71 5.49 87.66 0.48 17.19 16 7 O -0.58 -23.08 15.80 -3.04 -0.05 -23.13 16 8 N -0.61 -18.67 3.30 -817.36 -2.70 -21.37 16 9 C 0.11 2.60 5.78 86.70 0.50 3.10 16 10 C -0.09 -2.73 4.16 -9.27 -0.04 -2.77 16 11 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 12 C 0.14 5.34 6.49 86.65 0.56 5.90 16 13 N -0.62 -31.62 3.38 -697.59 -2.36 -33.98 16 14 C -0.24 -13.56 10.24 84.03 0.86 -12.70 16 15 H 0.08 4.37 7.84 -2.91 -0.02 4.34 16 16 C -0.07 -3.74 5.45 84.86 0.46 -3.28 16 17 N -0.95 -57.38 10.39 21.65 0.22 -57.15 16 18 Si 0.97 46.29 29.56 68.60 2.03 48.32 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.19 9.43 4.83 86.59 0.42 9.85 16 23 C -0.11 -3.84 4.01 -9.48 -0.04 -3.88 16 24 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 25 C 0.13 4.64 6.22 86.59 0.54 5.18 16 26 C -0.09 -1.74 4.77 -19.87 -0.09 -1.84 16 27 C -0.13 -2.85 8.86 22.27 0.20 -2.65 16 28 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 29 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16 30 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 31 C -0.11 -1.64 9.67 22.27 0.22 -1.42 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.03 0.85 7.15 -2.39 -0.02 0.83 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 1.50 7.12 -2.39 -0.02 1.49 16 39 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.10 1.78 6.61 -2.39 -0.02 1.76 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.01 0.47 7.72 -2.39 -0.02 0.45 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H -0.01 -0.60 7.21 -2.39 -0.02 -0.62 16 45 H 0.03 1.78 6.88 -2.39 -0.02 1.76 16 46 H 0.03 1.37 7.29 -2.39 -0.02 1.35 16 47 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.10 2.78 7.20 -2.91 -0.02 2.76 16 49 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 50 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 51 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 52 H 0.15 1.44 7.95 -2.91 -0.02 1.41 16 Total: -1.00 -75.08 404.82 3.76 -71.32 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.88 Total: 16.63 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.73 Total: -0.63 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.83 Total: -112.51 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -75.08 3.76 -71.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271892657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.938 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds