Wall clock time and date at job start Wed Apr 1 2020 01:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99767 * 4 3 2 6 6 C 1.50699 * 109.47078 * 184.99974 * 4 3 2 7 7 O 1.21285 * 120.00039 * 239.99931 * 6 4 3 8 8 N 1.34774 * 119.99942 * 59.99862 * 6 4 3 9 9 C 1.46741 * 125.33188 * 359.69299 * 8 6 4 10 10 C 1.54098 * 106.63674 * 161.58628 * 9 8 6 11 11 H 1.08999 * 113.49823 * 151.37243 * 10 9 8 12 12 C 1.53973 * 109.44373 * 278.64203 * 10 9 8 13 13 N 1.46772 * 106.62483 * 138.17749 * 12 10 9 14 14 C 1.36934 * 125.34213 * 161.51765 * 13 12 10 15 15 H 1.08007 * 119.99472 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00343 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00000 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99954 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46942 * 59.99942 * 18 16 14 20 20 H 1.48492 * 109.47210 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47166 * 300.00104 * 18 16 14 22 22 C 1.46675 * 109.32607 * 341.48080 * 13 12 10 23 23 C 1.53733 * 107.93977 * 0.54759 * 22 13 12 24 24 H 1.08998 * 113.05912 * 140.00376 * 23 22 13 25 25 C 1.46645 * 125.32723 * 180.02562 * 8 6 4 26 26 C 1.50701 * 109.47212 * 64.99766 * 4 3 2 27 27 C 1.38236 * 119.99963 * 59.72884 * 26 4 3 28 28 C 1.38230 * 120.00046 * 179.76840 * 27 26 4 29 29 C 1.38232 * 120.00089 * 0.49748 * 28 27 26 30 30 C 1.38237 * 119.99772 * 359.75784 * 29 28 27 31 31 C 1.38229 * 120.00216 * 240.00128 * 26 4 3 32 32 H 1.08993 * 109.47322 * 300.00158 * 1 2 3 33 33 H 1.09004 * 109.46881 * 60.00519 * 1 2 3 34 34 H 1.09002 * 109.47196 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47630 * 239.99870 * 2 1 3 36 36 H 1.09004 * 109.47346 * 119.99740 * 2 1 3 37 37 H 1.09001 * 109.46917 * 59.99433 * 3 2 1 38 38 H 1.09004 * 109.46741 * 300.00111 * 3 2 1 39 39 H 1.09004 * 110.01176 * 281.01391 * 9 8 6 40 40 H 1.09000 * 110.00729 * 42.37883 * 9 8 6 41 41 H 1.08993 * 110.02350 * 257.46675 * 12 10 9 42 42 H 1.08994 * 110.02767 * 18.88509 * 12 10 9 43 43 H 0.97005 * 119.99801 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.77497 * 240.92878 * 22 13 12 45 45 H 1.09001 * 109.77199 * 120.16614 * 22 13 12 46 46 H 1.08990 * 109.76090 * 300.43982 * 25 8 6 47 47 H 1.09003 * 109.76129 * 61.15755 * 25 8 6 48 48 H 1.08010 * 119.99941 * 359.97438 * 27 26 4 49 49 H 1.08004 * 120.00204 * 180.22968 * 28 27 26 50 50 H 1.08000 * 120.00534 * 179.72378 * 29 28 27 51 51 H 1.08003 * 119.99731 * 179.97438 * 30 29 28 52 52 H 1.08002 * 119.99976 * 359.97438 * 31 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0724 2.8579 0.1232 7 8 4.7693 3.3325 -0.7486 8 7 3.7472 3.5964 1.2027 9 6 2.9096 3.1439 2.3194 10 6 3.1899 4.0985 3.4962 11 1 2.3452 4.2100 4.1760 12 6 4.4840 3.6663 4.2098 13 7 5.2269 4.8953 4.5131 14 6 6.2320 5.0058 5.4364 15 1 6.5347 4.1429 6.0110 16 6 6.8620 6.2269 5.6337 17 7 6.4936 7.2783 4.9331 18 14 8.2328 6.3777 6.8938 19 1 9.3404 5.4567 6.5330 20 1 8.7370 7.7743 6.9120 21 1 7.7111 6.0218 8.2378 22 6 4.7243 5.9864 3.6715 23 6 3.5926 5.4257 2.7951 24 1 2.7556 6.1153 2.6858 25 6 4.1694 4.9802 1.4419 26 6 4.0718 0.8422 -1.2886 27 6 3.7327 1.4190 -2.4983 28 6 4.1969 0.8712 -3.6794 29 6 4.9918 -0.2595 -3.6516 30 6 5.3265 -0.8393 -2.4422 31 6 4.8665 -0.2885 -1.2607 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 1.6766 1.9564 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 1.8572 3.1918 2.0397 40 1 3.1763 2.1238 2.5961 41 1 4.2430 3.1385 5.1324 42 1 5.0746 3.0249 3.5557 43 1 6.9341 8.1316 5.0708 44 1 5.5276 6.3643 3.0391 45 1 4.3404 6.7900 4.3000 46 1 5.2576 5.0339 1.4697 47 1 3.7887 5.6239 0.6489 48 1 3.1078 2.2997 -2.5203 49 1 3.9351 1.3239 -4.6244 50 1 5.3508 -0.6901 -4.5746 51 1 5.9472 -1.7229 -2.4204 52 1 5.1282 -0.7414 -0.3158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271892661.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:43 Heat of formation + Delta-G solvation = 11.356917 kcal Electronic energy + Delta-G solvation = -30793.345598 eV Core-core repulsion = 26950.873253 eV Total energy + Delta-G solvation = -3842.472345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.70074 -39.38158 -37.94405 -35.88173 -34.94881 -32.37482 -32.13569 -30.93263 -30.36551 -29.67937 -28.71688 -25.85027 -25.52197 -24.70436 -22.97652 -22.72341 -21.95318 -20.74819 -20.19253 -19.39877 -19.10975 -17.13194 -17.00893 -16.54745 -15.93637 -15.56456 -15.43700 -14.84910 -14.80296 -14.69986 -14.35559 -13.72420 -13.67130 -13.47763 -13.34865 -13.25134 -13.09843 -12.72863 -12.54644 -12.49303 -12.05872 -12.03865 -11.77042 -11.64460 -11.57555 -11.41304 -11.30280 -11.12260 -10.95413 -10.88003 -10.80147 -10.66315 -10.35619 -10.14943 -10.01589 -9.90297 -9.66729 -9.55615 -8.90585 -8.73974 -8.61647 -8.34579 -6.84804 -5.73397 -3.06967 1.30167 1.40359 2.79101 3.17897 3.40030 3.44460 3.45642 3.79545 4.36147 4.47496 4.49941 4.73996 4.75673 4.83699 4.87629 4.89963 4.97195 5.07342 5.10153 5.18111 5.24279 5.35248 5.40018 5.45177 5.51168 5.51539 5.56473 5.60680 5.65626 5.69468 5.70930 5.76763 5.88550 5.91805 5.93060 6.01141 6.01767 6.10653 6.14106 6.27262 6.33369 6.41120 6.47652 6.54249 6.58882 6.60832 6.68823 6.81872 6.96365 7.53092 7.54544 7.74592 7.79234 8.25065 8.35490 9.20857 9.81314 10.45024 11.38160 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.002792 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.184384 B =10025.198332 C =10769.949047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.117 4.117 4 C -0.065 4.065 5 H 0.103 0.897 6 C 0.530 3.470 7 O -0.535 6.535 8 N -0.607 5.607 9 C 0.109 3.891 10 C -0.111 4.111 11 H 0.099 0.901 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.187 3.813 23 C -0.122 4.122 24 H 0.088 0.912 25 C 0.119 3.881 26 C -0.058 4.058 27 C -0.084 4.084 28 C -0.123 4.123 29 C -0.123 4.123 30 C -0.124 4.124 31 C -0.112 4.112 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.016 0.984 43 H 0.253 0.747 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.659 -15.173 -12.765 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.155 4.155 4 C -0.086 4.086 5 H 0.121 0.879 6 C 0.318 3.682 7 O -0.411 6.411 8 N -0.340 5.340 9 C -0.014 4.014 10 C -0.130 4.130 11 H 0.117 0.883 12 C 0.019 3.981 13 N -0.328 5.328 14 C -0.359 4.359 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.743 3.257 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.062 3.938 23 C -0.142 4.142 24 H 0.106 0.894 25 C -0.003 4.003 26 C -0.058 4.058 27 C -0.102 4.102 28 C -0.141 4.141 29 C -0.141 4.141 30 C -0.142 4.142 31 C -0.130 4.130 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.100 -14.771 -13.220 23.224 hybrid contribution 0.860 0.201 0.726 1.143 sum -11.240 -14.571 -12.493 22.243 Atomic orbital electron populations 1.21758 0.95716 1.01573 1.01847 1.21515 0.95835 0.96092 1.02438 1.21828 0.91801 0.98215 1.03632 1.20323 0.97280 0.93738 0.97258 0.87929 1.20036 0.80434 0.86981 0.80745 1.90720 1.37908 1.72703 1.39804 1.48232 1.50805 1.14717 1.20237 1.22105 0.94096 0.98737 0.86512 1.22985 0.99656 0.94731 0.95661 0.88306 1.21235 0.89881 0.90709 0.96315 1.44203 1.40119 1.04299 1.44199 1.18988 1.08982 0.95341 1.12554 0.90499 1.24796 0.99911 0.95745 0.99851 1.69938 1.43876 1.00237 1.42888 0.86188 0.81788 0.76783 0.80931 1.21176 1.21570 1.21155 1.21038 0.91365 0.90067 0.91324 1.23136 1.00163 0.96777 0.94131 0.89387 1.21966 1.00671 0.80993 0.96647 1.19268 0.97743 0.95259 0.93530 1.20885 0.99087 0.98429 0.91794 1.21086 0.98546 0.96443 0.98009 1.21102 0.98757 0.96491 0.97796 1.21050 1.00367 1.00255 0.92507 1.21008 0.97641 0.96041 0.98357 0.92614 0.92831 0.92786 0.91663 0.91785 0.90082 0.91301 0.91524 0.90938 0.94719 0.96593 0.93631 0.93292 0.93352 0.90718 0.92295 0.86490 0.86322 0.86421 0.86253 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.96 5.75 -26.73 -0.15 -1.11 16 3 C -0.12 -1.09 4.45 -26.73 -0.12 -1.21 16 4 C -0.06 -0.76 1.77 -92.92 -0.16 -0.93 16 5 H 0.10 1.11 7.61 -51.93 -0.40 0.71 16 6 C 0.53 8.37 7.08 -10.99 -0.08 8.29 16 7 O -0.53 -10.48 15.44 5.55 0.09 -10.40 16 8 N -0.61 -9.34 3.30 -172.27 -0.57 -9.91 16 9 C 0.11 1.37 4.44 -3.34 -0.01 1.35 16 10 C -0.11 -1.71 4.16 -88.26 -0.37 -2.08 16 11 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 12 C 0.14 2.86 6.49 -3.39 -0.02 2.84 16 13 N -0.60 -15.01 3.38 -171.84 -0.58 -15.59 16 14 C -0.23 -6.37 10.25 -15.06 -0.15 -6.52 16 15 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 16 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 17 N -0.92 -26.82 10.25 55.49 0.57 -26.25 16 18 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.19 4.38 4.77 -3.57 -0.02 4.36 16 23 C -0.12 -2.14 4.01 -88.60 -0.36 -2.49 16 24 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 25 C 0.12 2.10 6.22 -3.60 -0.02 2.08 16 26 C -0.06 -0.71 3.37 -104.63 -0.35 -1.06 16 27 C -0.08 -1.05 7.88 -39.59 -0.31 -1.36 16 28 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 29 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 30 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 31 C -0.11 -1.27 9.67 -39.59 -0.38 -1.66 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.71 4.69 -51.93 -0.24 0.47 16 38 H 0.07 0.67 7.21 -51.93 -0.37 0.30 16 39 H 0.07 0.68 6.54 -51.93 -0.34 0.34 16 40 H 0.07 0.82 7.43 -51.93 -0.39 0.43 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.02 0.34 7.72 -51.93 -0.40 -0.07 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 44 H 0.05 1.30 6.73 -51.93 -0.35 0.95 16 45 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 46 H 0.07 1.58 7.29 -51.93 -0.38 1.20 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.12 1.47 7.49 -52.48 -0.39 1.08 16 49 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 50 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 51 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 52 H 0.12 1.16 7.95 -52.49 -0.42 0.74 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -32.59 399.96 -11.57 -44.16 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -8.64 Total: 0.51 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -3.44 Total: -5.61 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.58 Total: -51.76 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.59 -11.57 -44.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271892661.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.519 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds