Wall clock time and date at job start Wed Apr 1 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99767 * 4 3 2 6 6 C 1.50699 * 109.47078 * 184.99974 * 4 3 2 7 7 O 1.21285 * 120.00039 * 239.99931 * 6 4 3 8 8 N 1.34774 * 119.99942 * 59.99862 * 6 4 3 9 9 C 1.46741 * 125.33188 * 359.69299 * 8 6 4 10 10 C 1.54098 * 106.63674 * 161.58628 * 9 8 6 11 11 H 1.08999 * 113.49823 * 151.37243 * 10 9 8 12 12 C 1.53973 * 109.44373 * 278.64203 * 10 9 8 13 13 N 1.46772 * 106.62483 * 138.17749 * 12 10 9 14 14 C 1.36934 * 125.34213 * 161.51765 * 13 12 10 15 15 H 1.08007 * 119.99472 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00343 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00000 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99954 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46942 * 59.99942 * 18 16 14 20 20 H 1.48492 * 109.47210 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47166 * 300.00104 * 18 16 14 22 22 C 1.46675 * 109.32607 * 341.48080 * 13 12 10 23 23 C 1.53733 * 107.93977 * 0.54759 * 22 13 12 24 24 H 1.08998 * 113.05912 * 140.00376 * 23 22 13 25 25 C 1.46645 * 125.32723 * 180.02562 * 8 6 4 26 26 C 1.50701 * 109.47212 * 64.99766 * 4 3 2 27 27 C 1.38236 * 119.99963 * 59.72884 * 26 4 3 28 28 C 1.38230 * 120.00046 * 179.76840 * 27 26 4 29 29 C 1.38232 * 120.00089 * 0.49748 * 28 27 26 30 30 C 1.38237 * 119.99772 * 359.75784 * 29 28 27 31 31 C 1.38229 * 120.00216 * 240.00128 * 26 4 3 32 32 H 1.08993 * 109.47322 * 300.00158 * 1 2 3 33 33 H 1.09004 * 109.46881 * 60.00519 * 1 2 3 34 34 H 1.09002 * 109.47196 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47630 * 239.99870 * 2 1 3 36 36 H 1.09004 * 109.47346 * 119.99740 * 2 1 3 37 37 H 1.09001 * 109.46917 * 59.99433 * 3 2 1 38 38 H 1.09004 * 109.46741 * 300.00111 * 3 2 1 39 39 H 1.09004 * 110.01176 * 281.01391 * 9 8 6 40 40 H 1.09000 * 110.00729 * 42.37883 * 9 8 6 41 41 H 1.08993 * 110.02350 * 257.46675 * 12 10 9 42 42 H 1.08994 * 110.02767 * 18.88509 * 12 10 9 43 43 H 0.97005 * 119.99801 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.77497 * 240.92878 * 22 13 12 45 45 H 1.09001 * 109.77199 * 120.16614 * 22 13 12 46 46 H 1.08990 * 109.76090 * 300.43982 * 25 8 6 47 47 H 1.09003 * 109.76129 * 61.15755 * 25 8 6 48 48 H 1.08010 * 119.99941 * 359.97438 * 27 26 4 49 49 H 1.08004 * 120.00204 * 180.22968 * 28 27 26 50 50 H 1.08000 * 120.00534 * 179.72378 * 29 28 27 51 51 H 1.08003 * 119.99731 * 179.97438 * 30 29 28 52 52 H 1.08002 * 119.99976 * 359.97438 * 31 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0724 2.8579 0.1232 7 8 4.7693 3.3325 -0.7486 8 7 3.7472 3.5964 1.2027 9 6 2.9096 3.1439 2.3194 10 6 3.1899 4.0985 3.4962 11 1 2.3452 4.2100 4.1760 12 6 4.4840 3.6663 4.2098 13 7 5.2269 4.8953 4.5131 14 6 6.2320 5.0058 5.4364 15 1 6.5347 4.1429 6.0110 16 6 6.8620 6.2269 5.6337 17 7 6.4936 7.2783 4.9331 18 14 8.2328 6.3777 6.8938 19 1 9.3404 5.4567 6.5330 20 1 8.7370 7.7743 6.9120 21 1 7.7111 6.0218 8.2378 22 6 4.7243 5.9864 3.6715 23 6 3.5926 5.4257 2.7951 24 1 2.7556 6.1153 2.6858 25 6 4.1694 4.9802 1.4419 26 6 4.0718 0.8422 -1.2886 27 6 3.7327 1.4190 -2.4983 28 6 4.1969 0.8712 -3.6794 29 6 4.9918 -0.2595 -3.6516 30 6 5.3265 -0.8393 -2.4422 31 6 4.8665 -0.2885 -1.2607 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 1.6766 1.9564 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 1.8572 3.1918 2.0397 40 1 3.1763 2.1238 2.5961 41 1 4.2430 3.1385 5.1324 42 1 5.0746 3.0249 3.5557 43 1 6.9341 8.1316 5.0708 44 1 5.5276 6.3643 3.0391 45 1 4.3404 6.7900 4.3000 46 1 5.2576 5.0339 1.4697 47 1 3.7887 5.6239 0.6489 48 1 3.1078 2.2997 -2.5203 49 1 3.9351 1.3239 -4.6244 50 1 5.3508 -0.6901 -4.5746 51 1 5.9472 -1.7229 -2.4204 52 1 5.1282 -0.7414 -0.3158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271892661.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:42 Heat of formation + Delta-G solvation = -6.074988 kcal Electronic energy + Delta-G solvation = -30794.101502 eV Core-core repulsion = 26950.873253 eV Total energy + Delta-G solvation = -3843.228249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.88176 -40.50172 -39.18450 -36.81459 -36.47015 -34.05065 -33.04456 -31.86752 -31.75329 -31.26644 -29.65605 -27.43043 -27.02209 -25.82201 -24.29840 -23.58223 -22.78395 -21.96492 -21.51628 -20.84696 -20.26975 -18.87298 -18.05087 -17.75418 -17.18298 -16.74691 -16.57674 -16.37865 -15.86462 -15.67859 -15.50534 -15.39494 -14.74331 -14.64692 -14.35334 -14.29725 -14.08157 -13.93204 -13.77039 -13.49599 -13.41375 -13.32737 -13.21519 -13.01793 -12.77967 -12.70126 -12.56054 -12.29197 -12.07550 -11.98776 -11.89214 -11.84339 -11.70491 -11.64982 -11.57122 -11.52361 -11.23076 -10.80911 -10.67727 -9.75598 -9.64051 -9.57119 -8.88955 -7.86321 -5.21444 0.45522 0.56033 1.44042 1.47339 1.53499 1.58859 2.00073 2.48434 2.93290 3.31066 3.36553 3.47746 3.56115 3.71046 3.81440 3.94498 4.02183 4.05569 4.17842 4.19487 4.23122 4.27794 4.30570 4.36169 4.43352 4.54429 4.57541 4.65566 4.70717 4.78389 4.78700 4.81785 4.82815 4.96227 5.01949 5.03298 5.06001 5.12555 5.16270 5.19157 5.26983 5.32967 5.38026 5.41938 5.47120 5.54347 5.60032 5.60760 5.65381 5.72833 5.77226 6.15097 6.20375 6.54338 7.10370 7.13054 7.79490 8.40818 9.23510 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.002792 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.184384 B =10025.198332 C =10769.949047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.110 4.110 4 C -0.054 4.054 5 H 0.118 0.882 6 C 0.525 3.475 7 O -0.582 6.582 8 N -0.607 5.607 9 C 0.111 3.889 10 C -0.095 4.095 11 H 0.131 0.869 12 C 0.138 3.862 13 N -0.625 5.625 14 C -0.244 4.244 15 H 0.082 0.918 16 C -0.066 4.066 17 N -0.951 5.951 18 Si 0.977 3.023 19 H -0.281 1.281 20 H -0.295 1.295 21 H -0.272 1.272 22 C 0.197 3.803 23 C -0.109 4.109 24 H 0.118 0.882 25 C 0.127 3.873 26 C -0.073 4.073 27 C -0.103 4.103 28 C -0.134 4.134 29 C -0.128 4.128 30 C -0.129 4.129 31 C -0.125 4.125 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.007 0.993 43 H 0.246 0.754 44 H 0.002 0.998 45 H 0.016 0.984 46 H 0.026 0.974 47 H 0.065 0.935 48 H 0.106 0.894 49 H 0.133 0.867 50 H 0.142 0.858 51 H 0.143 0.857 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.630 -17.934 -12.400 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.147 4.147 4 C -0.075 4.075 5 H 0.135 0.865 6 C 0.315 3.685 7 O -0.462 6.462 8 N -0.340 5.340 9 C -0.010 4.010 10 C -0.114 4.114 11 H 0.149 0.851 12 C 0.013 3.987 13 N -0.351 5.351 14 C -0.373 4.373 15 H 0.100 0.900 16 C -0.259 4.259 17 N -0.600 5.600 18 Si 0.805 3.195 19 H -0.208 1.208 20 H -0.221 1.221 21 H -0.198 1.198 22 C 0.072 3.928 23 C -0.129 4.129 24 H 0.136 0.864 25 C 0.004 3.996 26 C -0.074 4.074 27 C -0.122 4.122 28 C -0.152 4.152 29 C -0.146 4.146 30 C -0.146 4.146 31 C -0.143 4.143 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.025 0.975 43 H 0.055 0.945 44 H 0.020 0.980 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.083 0.917 48 H 0.124 0.876 49 H 0.151 0.849 50 H 0.160 0.840 51 H 0.161 0.839 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.111 -17.586 -12.837 25.946 hybrid contribution 1.544 1.028 0.564 1.939 sum -12.567 -16.558 -12.272 24.139 Atomic orbital electron populations 1.21751 0.94870 1.02089 1.02083 1.21459 0.96456 0.94870 1.02490 1.21810 0.89714 0.99385 1.03803 1.20335 0.98922 0.90609 0.97647 0.86457 1.20849 0.79492 0.88286 0.79909 1.90694 1.40040 1.73943 1.41554 1.48320 1.50969 1.13657 1.21048 1.22349 0.95776 0.98836 0.84088 1.23018 0.98338 0.93518 0.96536 0.85136 1.21467 0.91294 0.88802 0.97147 1.44534 1.40249 1.06499 1.43795 1.19407 1.09630 0.95472 1.12781 0.90007 1.25645 1.02514 0.95671 1.02086 1.70179 1.44990 1.00342 1.44443 0.85172 0.78986 0.76236 0.79069 1.20756 1.22146 1.19801 1.20727 0.91811 0.89613 0.90698 1.22969 0.98647 0.98423 0.92829 0.86365 1.21646 0.97808 0.83056 0.97090 1.19419 0.98449 0.95887 0.93609 1.20960 0.99888 0.98578 0.92733 1.21358 0.98681 0.96932 0.98266 1.21442 0.98115 0.96049 0.98962 1.21407 1.00138 1.00857 0.92240 1.21280 0.97460 0.95989 0.99522 0.91781 0.93210 0.92179 0.92668 0.90705 0.88855 0.92091 0.87339 0.88616 0.93509 0.97472 0.94458 0.97970 0.96596 0.95538 0.91694 0.87554 0.84927 0.84023 0.83921 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.48 5.75 30.59 0.18 -1.31 16 3 C -0.11 -1.75 4.45 30.59 0.14 -1.61 16 4 C -0.05 -1.18 1.77 -12.29 -0.02 -1.20 16 5 H 0.12 2.20 7.61 -2.39 -0.02 2.18 16 6 C 0.52 16.27 7.08 87.66 0.62 16.89 16 7 O -0.58 -23.51 15.44 -3.05 -0.05 -23.55 16 8 N -0.61 -17.90 3.30 -817.34 -2.70 -20.60 16 9 C 0.11 2.36 4.44 86.71 0.39 2.74 16 10 C -0.09 -2.65 4.16 -9.26 -0.04 -2.69 16 11 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 12 C 0.14 5.27 6.49 86.66 0.56 5.83 16 13 N -0.62 -31.76 3.38 -697.56 -2.36 -34.12 16 14 C -0.24 -13.74 10.25 84.03 0.86 -12.88 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 16 C -0.07 -3.81 5.48 84.86 0.47 -3.35 16 17 N -0.95 -57.89 10.25 21.65 0.22 -57.67 16 18 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 C 0.20 9.61 4.77 86.59 0.41 10.02 16 23 C -0.11 -3.73 4.01 -9.48 -0.04 -3.77 16 24 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 25 C 0.13 4.55 6.22 86.59 0.54 5.09 16 26 C -0.07 -1.74 3.37 -19.87 -0.07 -1.81 16 27 C -0.10 -2.58 7.88 22.27 0.18 -2.41 16 28 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 29 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 30 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 31 C -0.12 -2.64 9.67 22.27 0.22 -2.42 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.84 7.38 -2.39 -0.02 0.82 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 1.23 4.69 -2.39 -0.01 1.22 16 38 H 0.06 1.09 7.21 -2.39 -0.02 1.07 16 39 H 0.11 1.55 6.54 -2.39 -0.02 1.53 16 40 H 0.10 1.68 7.43 -2.39 -0.02 1.66 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.01 0.30 7.72 -2.39 -0.02 0.28 16 43 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 44 H 0.00 0.12 6.73 -2.39 -0.02 0.11 16 45 H 0.02 0.86 7.38 -2.39 -0.02 0.85 16 46 H 0.03 1.19 7.29 -2.39 -0.02 1.17 16 47 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.11 2.77 7.49 -2.91 -0.02 2.75 16 49 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 50 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 51 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 52 H 0.13 2.32 7.95 -2.91 -0.02 2.30 16 Total: -1.00 -76.54 399.96 3.81 -72.74 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.89 Total: 15.74 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.77 Total: -0.92 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -4.83 Total: -112.38 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.54 3.81 -72.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271892661.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.663 kcal (2) G-P(sol) polarization free energy of solvation -76.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds