Wall clock time and date at job start Wed Apr 1 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47265 * 2 1 4 4 C 1.52998 * 109.47361 * 120.00355 * 2 1 3 5 5 H 1.09002 * 109.46625 * 299.99819 * 4 2 1 6 6 C 1.52999 * 109.47255 * 59.99223 * 4 2 1 7 7 N 1.46503 * 109.46730 * 175.00220 * 6 4 2 8 8 C 1.34776 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00041 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00271 * 180.02562 * 8 7 6 11 11 C 1.54414 * 129.01296 * 179.97438 * 10 8 7 12 12 C 1.54413 * 78.89191 * 180.64276 * 11 10 8 13 13 C 1.50696 * 129.01599 * 180.64470 * 12 11 10 14 14 C 1.38230 * 120.00346 * 179.97438 * 13 12 11 15 15 C 1.38235 * 120.00326 * 180.02562 * 14 13 12 16 16 C 1.38234 * 119.99814 * 359.97438 * 15 14 13 17 17 C 1.38239 * 120.00062 * 0.02871 * 16 15 14 18 18 C 1.38235 * 120.00123 * 359.97128 * 17 16 15 19 19 C 1.54894 * 84.49456 * 43.15486 * 12 11 10 20 20 C 1.54895 * 129.94926 * 301.16607 * 10 8 7 21 21 N 1.46499 * 109.47293 * 179.97438 * 4 2 1 22 22 C 1.36942 * 119.99927 * 84.99910 * 21 4 2 23 23 H 1.07999 * 120.00125 * 359.97438 * 22 21 4 24 24 C 1.38818 * 119.99869 * 180.02562 * 22 21 4 25 25 N 1.31616 * 119.99871 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99836 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.46991 * 89.99959 * 26 24 22 28 28 H 1.48497 * 109.47023 * 210.00045 * 26 24 22 29 29 H 1.48498 * 109.47170 * 329.99918 * 26 24 22 30 30 H 1.08996 * 109.46568 * 299.99688 * 1 2 3 31 31 H 1.08992 * 109.47228 * 60.00167 * 1 2 3 32 32 H 1.08998 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99881 * 2 1 3 34 34 H 1.09000 * 109.47150 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46877 * 300.00106 * 3 2 1 36 36 H 1.08994 * 109.47320 * 60.00148 * 3 2 1 37 37 H 1.08998 * 109.46627 * 55.00925 * 6 4 2 38 38 H 1.08992 * 109.47387 * 295.00359 * 6 4 2 39 39 H 0.97004 * 120.00345 * 0.02562 * 7 6 4 40 40 H 1.09000 * 114.92884 * 68.15740 * 11 10 8 41 41 H 1.08993 * 114.98743 * 293.13181 * 11 10 8 42 42 H 1.08000 * 120.00356 * 359.97438 * 14 13 12 43 43 H 1.08000 * 120.00616 * 179.70664 * 15 14 13 44 44 H 1.08001 * 120.00299 * 179.97438 * 16 15 14 45 45 H 1.08005 * 120.00087 * 180.02562 * 17 16 15 46 46 H 1.07999 * 120.00181 * 180.02562 * 18 17 16 47 47 H 1.08996 * 114.97378 * 69.39162 * 19 12 11 48 48 H 1.08996 * 114.97923 * 204.56846 * 19 12 11 49 49 H 1.08997 * 116.12057 * 67.75691 * 20 10 8 50 50 H 1.08994 * 113.82819 * 292.59586 * 20 10 8 51 51 H 0.96993 * 120.00120 * 264.99667 * 21 4 2 52 52 H 0.96996 * 119.99814 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1391 6 6 1.5300 -2.1638 1.2492 7 7 2.1142 -2.8882 2.3807 8 6 1.8060 -4.1847 2.5822 9 8 1.0447 -4.7515 1.8271 10 6 2.4065 -4.9298 3.7464 11 6 2.2006 -6.4005 4.1696 12 6 3.1678 -5.9076 5.2677 13 6 3.7572 -6.6713 6.4254 14 6 4.6136 -6.0384 7.3067 15 6 5.1546 -6.7391 8.3684 16 6 4.8388 -8.0727 8.5491 17 6 3.9823 -8.7057 7.6677 18 6 3.4413 -8.0050 6.6060 19 6 2.2673 -4.6474 5.2862 20 6 3.8916 -5.1916 4.1004 21 7 3.5051 -0.7218 1.2488 22 6 4.1903 0.3528 1.7498 23 1 3.6507 1.2009 2.1447 24 6 5.5784 0.3525 1.7490 25 7 6.2360 -0.6808 1.2672 26 14 6.5131 1.8187 2.4316 27 1 6.7613 1.6160 3.8816 28 1 7.8102 1.9532 1.7214 29 1 5.7107 3.0526 2.2346 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.8184 -2.6511 0.3179 38 1 0.4437 -2.1650 1.3388 39 1 2.7228 -2.4348 2.9848 40 1 2.6198 -7.1384 3.4855 41 1 1.1964 -6.6434 4.5169 42 1 4.8608 -4.9966 7.1654 43 1 5.8275 -6.2459 9.0542 44 1 5.2618 -8.6203 9.3783 45 1 3.7352 -9.7475 7.8091 46 1 2.7718 -8.4994 5.9177 47 1 1.2664 -4.8029 5.6887 48 1 2.7520 -3.7406 5.6478 49 1 4.4773 -4.3186 4.3882 50 1 4.4012 -5.8531 3.3999 51 1 3.9897 -1.4833 0.8938 52 1 7.2060 -0.6808 1.2663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271942494.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:47 Heat of formation + Delta-G solvation = 70.251768 kcal Electronic energy + Delta-G solvation = -29638.696755 eV Core-core repulsion = 25798.778283 eV Total energy + Delta-G solvation = -3839.918472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.16973 -40.35347 -39.57125 -38.63403 -35.27562 -34.90520 -32.28244 -32.10817 -31.77247 -29.83685 -27.53425 -26.83212 -26.78334 -26.63933 -25.30146 -23.88346 -23.22434 -22.79294 -21.26397 -20.59421 -19.51098 -19.01391 -18.33295 -17.26214 -17.10338 -16.87049 -16.17774 -15.95678 -15.81888 -15.64202 -15.31310 -15.25239 -15.13600 -14.95167 -14.89089 -14.34310 -14.23328 -13.94297 -13.74687 -13.49262 -13.41231 -12.90832 -12.85438 -12.71451 -12.55544 -12.47456 -12.39751 -12.27502 -12.21952 -12.05312 -12.01269 -11.93018 -11.73488 -11.44321 -11.34640 -11.28278 -11.20748 -10.91677 -10.74798 -10.04310 -9.79856 -9.58058 -8.94836 -7.86192 -5.13244 0.39525 0.52649 1.42020 1.49993 1.51960 1.58427 2.15856 2.60388 2.79047 3.14816 3.22614 3.38250 3.46070 3.47489 3.60084 3.62732 3.86408 3.92535 4.05029 4.16533 4.20704 4.30181 4.32050 4.33973 4.45510 4.52664 4.59828 4.63601 4.65889 4.72074 4.73942 4.77472 4.87531 4.90332 4.93237 4.93499 4.98393 5.06846 5.07384 5.16107 5.19005 5.22186 5.26841 5.32657 5.51332 5.61471 5.62870 5.65130 5.65803 5.72392 5.77806 6.12603 6.33400 6.56088 7.19318 7.41668 8.12621 8.38088 9.36436 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.002838 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.804492 B = 9865.235684 C =12021.487451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.173 3.827 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.702 5.702 8 C 0.570 3.430 9 O -0.582 6.582 10 C -0.179 4.179 11 C -0.080 4.080 12 C -0.069 4.069 13 C -0.039 4.039 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.081 4.081 20 C -0.092 4.092 21 N -0.727 5.727 22 C -0.213 4.213 23 H 0.079 0.921 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.956 3.044 27 H -0.290 1.290 28 H -0.305 1.305 29 H -0.272 1.272 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.411 0.589 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.130 0.870 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.372 0.628 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.186 -11.691 12.881 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.191 4.191 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.351 5.351 8 C 0.357 3.643 9 O -0.462 6.462 10 C -0.182 4.182 11 C -0.118 4.118 12 C -0.069 4.069 13 C -0.039 4.039 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.130 4.130 21 N -0.366 5.366 22 C -0.345 4.345 23 H 0.097 0.903 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.788 3.212 27 H -0.217 1.217 28 H -0.233 1.233 29 H -0.197 1.197 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.247 0.753 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.141 0.859 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.148 0.852 47 H 0.108 0.892 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.089 0.911 51 H 0.204 0.796 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.699 -11.872 12.417 19.256 hybrid contribution 1.448 0.907 -0.173 1.717 sum -7.252 -10.964 12.245 17.965 Atomic orbital electron populations 1.21851 0.93939 1.01863 1.02197 1.21629 0.95923 0.96817 0.98441 1.21725 1.01673 0.95459 1.00281 1.20679 0.84007 0.92071 0.96827 0.92430 1.21675 0.98089 0.92206 0.88351 1.45895 1.48040 1.10689 1.30519 1.18953 0.79946 0.81439 0.83958 1.90640 1.38315 1.68806 1.48486 1.24160 0.99694 0.99528 0.94846 1.23755 0.99655 0.92885 0.95474 1.22215 0.95982 0.95878 0.92803 1.18392 0.97941 0.93705 0.93879 1.21133 0.97143 1.00600 0.95017 1.21418 1.00050 0.95154 0.97800 1.21522 0.97941 0.94897 0.99914 1.21444 0.97268 1.00974 0.94502 1.21187 1.00334 0.93355 0.98719 1.24545 1.00194 0.97513 0.89628 1.24120 0.92845 1.00034 0.96005 1.42565 1.00453 1.20134 1.73489 1.19447 0.88752 0.96482 1.29822 0.90330 1.25333 0.97567 0.99803 1.03570 1.69804 1.06314 1.31673 1.53909 0.85384 0.77980 0.80359 0.77525 1.21711 1.23286 1.19715 0.92163 0.92083 0.92362 0.93197 0.93209 0.93089 0.93432 0.93303 0.89882 0.75318 0.90605 0.89456 0.85873 0.84249 0.83751 0.83748 0.85181 0.89219 0.89367 0.90052 0.91052 0.79624 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.84 71.98 0.64 -2.90 16 2 C -0.11 -3.45 2.69 -10.79 -0.03 -3.48 16 3 C -0.13 -4.57 8.26 71.98 0.59 -3.98 16 4 C 0.17 6.13 2.18 44.99 0.10 6.23 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 4.05 4.73 86.38 0.41 4.45 16 7 N -0.70 -23.57 5.39 -463.06 -2.49 -26.06 16 8 C 0.57 19.56 7.94 87.66 0.70 20.26 16 9 O -0.58 -23.43 17.10 -3.05 -0.05 -23.48 16 10 C -0.18 -4.99 3.50 -62.86 -0.22 -5.21 16 11 C -0.08 -1.91 7.33 30.62 0.22 -1.68 16 12 C -0.07 -1.53 3.09 -63.68 -0.20 -1.73 16 13 C -0.04 -0.82 5.88 -19.87 -0.12 -0.93 16 14 C -0.12 -2.41 9.74 22.27 0.22 -2.19 16 15 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 16 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 17 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 18 C -0.12 -2.15 9.66 22.27 0.22 -1.93 16 19 C -0.08 -1.83 7.95 31.90 0.25 -1.58 16 20 C -0.09 -2.45 7.84 31.09 0.24 -2.20 16 21 N -0.73 -32.54 4.44 -322.94 -1.43 -33.98 16 22 C -0.21 -10.54 7.57 84.03 0.64 -9.91 16 23 H 0.08 3.75 7.39 -2.91 -0.02 3.73 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 25 N -0.97 -55.99 13.06 21.65 0.28 -55.71 16 26 Si 0.96 43.98 29.55 68.60 2.03 46.01 16 27 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 28 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.05 2.07 6.01 -2.39 -0.01 2.06 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.53 6.71 -2.39 -0.02 2.51 16 39 H 0.41 13.99 8.14 -92.71 -0.75 13.23 16 40 H 0.08 1.82 7.95 -2.39 -0.02 1.80 16 41 H 0.09 1.90 7.91 -2.39 -0.02 1.88 16 42 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.13 2.07 7.75 -2.91 -0.02 2.05 16 47 H 0.09 1.82 7.91 -2.39 -0.02 1.80 16 48 H 0.09 1.91 7.97 -2.39 -0.02 1.89 16 49 H 0.08 2.23 7.97 -2.39 -0.02 2.21 16 50 H 0.07 1.96 7.93 -2.39 -0.02 1.94 16 51 H 0.37 18.71 7.80 -92.71 -0.72 17.99 16 52 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -62.52 419.13 2.57 -59.95 By element: Atomic # 1 Polarization: 49.01 SS G_CDS: -0.56 Total: 48.45 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 4.80 Total: -15.18 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.65 Total: -115.75 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.05 Total: -23.48 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -62.52 2.57 -59.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271942494.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.206 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds