Wall clock time and date at job start Wed Apr 1 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46757 * 2 1 4 4 C 1.52994 * 109.47181 * 119.99937 * 2 1 3 5 5 H 1.08997 * 109.47546 * 300.00172 * 4 2 1 6 6 C 1.53002 * 109.47213 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.47448 * 185.00350 * 6 4 2 8 8 C 1.34776 * 120.00244 * 179.97438 * 7 6 4 9 9 O 1.21277 * 119.99833 * 359.97438 * 8 7 6 10 10 C 1.50694 * 119.99859 * 179.97438 * 8 7 6 11 11 C 1.54420 * 129.01166 * 180.02562 * 10 8 7 12 12 C 1.54413 * 78.89417 * 180.63901 * 11 10 8 13 13 C 1.50696 * 129.01567 * 180.64097 * 12 11 10 14 14 C 1.38230 * 120.00309 * 180.02562 * 13 12 11 15 15 C 1.38235 * 120.00326 * 179.97438 * 14 13 12 16 16 C 1.38234 * 119.99814 * 359.97438 * 15 14 13 17 17 C 1.38240 * 120.00061 * 0.07178 * 16 15 14 18 18 C 1.38234 * 120.00081 * 359.88514 * 17 16 15 19 19 C 1.54896 * 84.49344 * 43.15425 * 12 11 10 20 20 C 1.54889 * 84.49540 * 318.13389 * 12 11 10 21 21 N 1.46502 * 109.47392 * 60.00352 * 4 2 1 22 22 C 1.36936 * 120.00061 * 275.00061 * 21 4 2 23 23 H 1.08006 * 119.99666 * 359.97438 * 22 21 4 24 24 C 1.38807 * 120.00375 * 179.97438 * 22 21 4 25 25 N 1.31622 * 119.99515 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00302 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47015 * 89.99881 * 26 24 22 28 28 H 1.48498 * 109.47300 * 210.00138 * 26 24 22 29 29 H 1.48503 * 109.47111 * 330.00297 * 26 24 22 30 30 H 1.08997 * 109.47021 * 299.99569 * 1 2 3 31 31 H 1.08996 * 109.47299 * 60.00182 * 1 2 3 32 32 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47021 * 240.00431 * 2 1 3 34 34 H 1.08998 * 109.46808 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47513 * 300.00254 * 3 2 1 36 36 H 1.09005 * 109.47275 * 60.00444 * 3 2 1 37 37 H 1.08998 * 109.47417 * 64.99976 * 6 4 2 38 38 H 1.09002 * 109.47144 * 304.99976 * 6 4 2 39 39 H 0.96999 * 119.99438 * 359.97438 * 7 6 4 40 40 H 1.09004 * 114.93268 * 68.15147 * 11 10 8 41 41 H 1.08993 * 114.98510 * 293.13187 * 11 10 8 42 42 H 1.08000 * 120.00376 * 359.97438 * 14 13 12 43 43 H 1.08000 * 120.00616 * 179.72578 * 15 14 13 44 44 H 1.08001 * 120.00299 * 179.97438 * 16 15 14 45 45 H 1.08005 * 120.00107 * 179.97438 * 17 16 15 46 46 H 1.07999 * 120.00147 * 180.10835 * 18 17 16 47 47 H 1.08996 * 114.97637 * 69.38773 * 19 12 11 48 48 H 1.08996 * 114.97692 * 204.56532 * 19 12 11 49 49 H 1.09007 * 114.97629 * 155.43120 * 20 12 11 50 50 H 1.08994 * 114.97603 * 290.60804 * 20 12 11 51 51 H 0.96999 * 120.00269 * 94.99382 * 21 4 2 52 52 H 0.97006 * 119.99408 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5129 2.3809 8 6 5.3836 -1.6542 2.5826 9 8 6.1716 -1.1257 1.8272 10 6 5.8859 -2.4686 3.7467 11 6 7.3412 -2.7644 4.1701 12 6 6.5542 -3.5401 5.2486 13 6 7.0779 -4.3500 6.4065 14 6 6.1957 -4.9747 7.2681 15 6 6.6761 -5.7180 8.3300 16 6 8.0388 -5.8371 8.5298 17 6 8.9210 -5.2117 7.6687 18 6 8.4406 -4.4690 6.6064 19 6 5.6665 -3.9926 4.0626 20 6 5.6379 -2.2914 5.2654 21 7 1.5518 -2.1025 1.2492 22 6 0.3103 -2.3898 1.7504 23 1 -0.3088 -1.5982 2.1460 24 6 -0.1526 -3.6985 1.7500 25 7 0.6021 -4.6632 1.2683 26 14 -1.8459 -4.0905 2.4343 27 1 -2.8531 -3.9964 1.3471 28 1 -1.8477 -5.4664 2.9930 29 1 -2.1832 -3.1203 3.5068 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.9330 0.3032 1.3393 38 1 3.9337 -1.1547 0.3182 39 1 3.4282 -1.9358 2.9848 40 1 7.8970 -1.9019 4.5381 41 1 7.9052 -3.3871 3.4758 42 1 5.1311 -4.8820 7.1118 43 1 5.9869 -6.2024 9.0058 44 1 8.4142 -6.4176 9.3597 45 1 9.9856 -5.3044 7.8251 46 1 9.1298 -3.9818 5.9326 47 1 6.1470 -4.6761 3.3626 48 1 4.6501 -4.2796 4.3317 49 1 4.6196 -2.4723 5.6096 50 1 6.0918 -1.3932 5.6838 51 1 2.1079 -2.8135 0.8942 52 1 0.2785 -5.5777 1.2677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271942496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:51 Heat of formation + Delta-G solvation = 84.163969 kcal Electronic energy + Delta-G solvation = -29639.507984 eV Core-core repulsion = 25800.192790 eV Total energy + Delta-G solvation = -3839.315194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15633 -39.15568 -38.65038 -37.12796 -33.81956 -33.13822 -31.47593 -31.08380 -30.41816 -28.31573 -26.22837 -25.86267 -25.76559 -25.35169 -23.74294 -22.69103 -22.51756 -21.46883 -19.98092 -19.28500 -18.35467 -17.51101 -17.08152 -16.28396 -15.75255 -15.25869 -15.08345 -15.00085 -14.68205 -14.29640 -14.18899 -14.08601 -13.89700 -13.57200 -13.48961 -13.34366 -13.09841 -12.92848 -12.47636 -12.20690 -12.04457 -11.64051 -11.61411 -11.48320 -11.24207 -11.23200 -11.15382 -11.05643 -10.96620 -10.85822 -10.64153 -10.34360 -10.30927 -10.23542 -10.12452 -9.96721 -9.57944 -9.49887 -9.09978 -8.94111 -8.83288 -8.61919 -7.05141 -5.84049 -3.13274 1.12312 1.22563 2.73816 3.37129 3.43244 3.44920 3.45444 3.52710 4.12033 4.23955 4.34727 4.49897 4.51575 4.58837 4.60201 4.82171 4.85149 4.95168 5.17263 5.32591 5.33806 5.39112 5.40481 5.52477 5.54386 5.57793 5.62335 5.69702 5.74619 5.79913 5.83662 5.87976 5.88865 5.90970 5.93802 5.99564 6.12761 6.17845 6.23463 6.32797 6.36636 6.37412 6.44336 6.46851 6.52613 6.61668 6.66995 6.80574 6.92018 7.06015 7.28057 7.64387 7.94861 8.33037 8.56779 9.45196 9.99887 10.35999 11.37548 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.002841 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.655897 B = 9854.782929 C =12019.230006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.113 3.887 7 N -0.704 5.704 8 C 0.572 3.428 9 O -0.549 6.549 10 C -0.158 4.158 11 C -0.084 4.084 12 C -0.092 4.092 13 C -0.020 4.020 14 C -0.106 4.106 15 C -0.119 4.119 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.109 4.109 19 C -0.089 4.089 20 C -0.090 4.090 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.072 0.928 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.901 3.099 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.411 0.589 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.076 0.924 51 H 0.385 0.615 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.120 2.493 11.109 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.354 5.354 8 C 0.357 3.643 9 O -0.427 6.427 10 C -0.161 4.161 11 C -0.122 4.122 12 C -0.093 4.093 13 C -0.020 4.020 14 C -0.124 4.124 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.139 4.139 18 C -0.127 4.127 19 C -0.126 4.126 20 C -0.127 4.127 21 N -0.362 5.362 22 C -0.367 4.367 23 H 0.090 0.910 24 C -0.207 4.207 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.248 0.752 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.095 0.905 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.484 2.859 10.648 17.417 hybrid contribution -1.182 -0.733 0.362 1.437 sum 12.302 2.125 11.010 16.646 Atomic orbital electron populations 1.21817 0.94930 1.03892 0.98990 1.21730 0.96922 0.94415 1.00056 1.21943 1.00498 0.97332 1.00929 1.20543 0.89263 0.88225 0.96014 0.92863 1.21770 0.95724 0.94812 0.88792 1.45881 1.06356 1.52389 1.30769 1.18498 0.82441 0.79686 0.83676 1.90667 1.55956 1.48974 1.47103 1.24162 0.99348 0.97892 0.94715 1.23744 0.94018 0.98851 0.95545 1.22406 0.97670 0.95928 0.93248 1.18346 0.92991 0.96870 0.93814 1.21007 0.99961 0.96903 0.94511 1.21147 0.95610 0.99087 0.97874 1.21165 0.93537 0.99965 0.99561 1.21121 0.99692 0.97861 0.95248 1.20999 0.94686 0.99052 0.97922 1.24558 1.00134 0.92969 0.94971 1.24091 0.99831 0.96704 0.92116 1.42459 1.18085 1.01845 1.73841 1.19183 0.92781 0.92340 1.32427 0.90962 1.24719 0.98219 0.95898 1.01816 1.69665 1.36714 0.99866 1.51347 0.86284 0.84502 0.77363 0.78592 1.21779 1.21880 1.20790 0.94066 0.95003 0.89504 0.91881 0.93038 0.93557 0.93199 0.91535 0.91833 0.75237 0.90515 0.90326 0.85728 0.85921 0.86193 0.86046 0.85947 0.90174 0.89419 0.89716 0.90517 0.78082 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.26 37.16 0.31 -2.15 16 2 C -0.11 -1.84 2.69 -90.62 -0.24 -2.08 16 3 C -0.15 -2.08 8.84 37.16 0.33 -1.75 16 4 C 0.17 3.07 2.18 -67.93 -0.15 2.92 16 5 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.91 4.73 -4.04 -0.02 1.89 16 7 N -0.70 -11.72 5.39 -60.29 -0.32 -12.05 16 8 C 0.57 9.70 7.94 -10.99 -0.09 9.62 16 9 O -0.55 -10.94 17.10 5.56 0.10 -10.85 16 10 C -0.16 -2.19 3.50 -170.98 -0.60 -2.79 16 11 C -0.08 -1.02 7.33 -26.71 -0.20 -1.21 16 12 C -0.09 -1.05 3.09 -172.25 -0.53 -1.58 16 13 C -0.02 -0.22 5.88 -104.63 -0.62 -0.83 16 14 C -0.11 -1.10 9.74 -39.59 -0.39 -1.48 16 15 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 16 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 17 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 18 C -0.11 -1.07 9.66 -39.58 -0.38 -1.45 16 19 C -0.09 -1.15 7.95 -24.71 -0.20 -1.34 16 20 C -0.09 -1.05 7.84 -25.97 -0.20 -1.25 16 21 N -0.72 -15.98 4.44 -53.43 -0.24 -16.21 16 22 C -0.24 -5.84 7.57 -15.06 -0.11 -5.95 16 23 H 0.07 1.76 7.40 -52.48 -0.39 1.37 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.14 13.06 55.49 0.72 -25.42 16 26 Si 0.90 21.14 29.55 -169.99 -5.02 16.12 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.83 6.01 -51.93 -0.31 1.51 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.41 6.92 8.14 -40.82 -0.33 6.59 16 40 H 0.08 0.88 7.94 -51.93 -0.41 0.46 16 41 H 0.08 0.94 7.91 -51.93 -0.41 0.53 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.12 1.07 7.75 -52.49 -0.41 0.66 16 47 H 0.08 1.05 7.91 -51.93 -0.41 0.64 16 48 H 0.09 1.16 7.97 -51.93 -0.41 0.74 16 49 H 0.08 0.95 7.97 -51.93 -0.41 0.54 16 50 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 51 H 0.39 9.42 7.80 -40.82 -0.32 9.10 16 52 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 419.14 15.07 6.32 6.32 Total: -1.00 -28.84 419.14 -11.53 -40.37 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -8.70 Total: 15.95 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -4.38 Total: -14.22 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.16 Total: -53.68 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.10 Total: -10.85 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -28.84 -11.53 -40.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271942496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.529 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds