Wall clock time and date at job start Wed Apr 1 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46757 * 2 1 4 4 C 1.52994 * 109.47181 * 119.99937 * 2 1 3 5 5 H 1.08997 * 109.47546 * 300.00172 * 4 2 1 6 6 C 1.53002 * 109.47213 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.47448 * 185.00350 * 6 4 2 8 8 C 1.34776 * 120.00244 * 179.97438 * 7 6 4 9 9 O 1.21277 * 119.99833 * 359.97438 * 8 7 6 10 10 C 1.50694 * 119.99859 * 179.97438 * 8 7 6 11 11 C 1.54420 * 129.01166 * 180.02562 * 10 8 7 12 12 C 1.54413 * 78.89417 * 180.63901 * 11 10 8 13 13 C 1.50696 * 129.01567 * 180.64097 * 12 11 10 14 14 C 1.38230 * 120.00309 * 180.02562 * 13 12 11 15 15 C 1.38235 * 120.00326 * 179.97438 * 14 13 12 16 16 C 1.38234 * 119.99814 * 359.97438 * 15 14 13 17 17 C 1.38240 * 120.00061 * 0.07178 * 16 15 14 18 18 C 1.38234 * 120.00081 * 359.88514 * 17 16 15 19 19 C 1.54896 * 84.49344 * 43.15425 * 12 11 10 20 20 C 1.54889 * 84.49540 * 318.13389 * 12 11 10 21 21 N 1.46502 * 109.47392 * 60.00352 * 4 2 1 22 22 C 1.36936 * 120.00061 * 275.00061 * 21 4 2 23 23 H 1.08006 * 119.99666 * 359.97438 * 22 21 4 24 24 C 1.38807 * 120.00375 * 179.97438 * 22 21 4 25 25 N 1.31622 * 119.99515 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00302 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47015 * 89.99881 * 26 24 22 28 28 H 1.48498 * 109.47300 * 210.00138 * 26 24 22 29 29 H 1.48503 * 109.47111 * 330.00297 * 26 24 22 30 30 H 1.08997 * 109.47021 * 299.99569 * 1 2 3 31 31 H 1.08996 * 109.47299 * 60.00182 * 1 2 3 32 32 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47021 * 240.00431 * 2 1 3 34 34 H 1.08998 * 109.46808 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47513 * 300.00254 * 3 2 1 36 36 H 1.09005 * 109.47275 * 60.00444 * 3 2 1 37 37 H 1.08998 * 109.47417 * 64.99976 * 6 4 2 38 38 H 1.09002 * 109.47144 * 304.99976 * 6 4 2 39 39 H 0.96999 * 119.99438 * 359.97438 * 7 6 4 40 40 H 1.09004 * 114.93268 * 68.15147 * 11 10 8 41 41 H 1.08993 * 114.98510 * 293.13187 * 11 10 8 42 42 H 1.08000 * 120.00376 * 359.97438 * 14 13 12 43 43 H 1.08000 * 120.00616 * 179.72578 * 15 14 13 44 44 H 1.08001 * 120.00299 * 179.97438 * 16 15 14 45 45 H 1.08005 * 120.00107 * 179.97438 * 17 16 15 46 46 H 1.07999 * 120.00147 * 180.10835 * 18 17 16 47 47 H 1.08996 * 114.97637 * 69.38773 * 19 12 11 48 48 H 1.08996 * 114.97692 * 204.56532 * 19 12 11 49 49 H 1.09007 * 114.97629 * 155.43120 * 20 12 11 50 50 H 1.08994 * 114.97603 * 290.60804 * 20 12 11 51 51 H 0.96999 * 120.00269 * 94.99382 * 21 4 2 52 52 H 0.97006 * 119.99408 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5129 2.3809 8 6 5.3836 -1.6542 2.5826 9 8 6.1716 -1.1257 1.8272 10 6 5.8859 -2.4686 3.7467 11 6 7.3412 -2.7644 4.1701 12 6 6.5542 -3.5401 5.2486 13 6 7.0779 -4.3500 6.4065 14 6 6.1957 -4.9747 7.2681 15 6 6.6761 -5.7180 8.3300 16 6 8.0388 -5.8371 8.5298 17 6 8.9210 -5.2117 7.6687 18 6 8.4406 -4.4690 6.6064 19 6 5.6665 -3.9926 4.0626 20 6 5.6379 -2.2914 5.2654 21 7 1.5518 -2.1025 1.2492 22 6 0.3103 -2.3898 1.7504 23 1 -0.3088 -1.5982 2.1460 24 6 -0.1526 -3.6985 1.7500 25 7 0.6021 -4.6632 1.2683 26 14 -1.8459 -4.0905 2.4343 27 1 -2.8531 -3.9964 1.3471 28 1 -1.8477 -5.4664 2.9930 29 1 -2.1832 -3.1203 3.5068 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.9330 0.3032 1.3393 38 1 3.9337 -1.1547 0.3182 39 1 3.4282 -1.9358 2.9848 40 1 7.8970 -1.9019 4.5381 41 1 7.9052 -3.3871 3.4758 42 1 5.1311 -4.8820 7.1118 43 1 5.9869 -6.2024 9.0058 44 1 8.4142 -6.4176 9.3597 45 1 9.9856 -5.3044 7.8251 46 1 9.1298 -3.9818 5.9326 47 1 6.1470 -4.6761 3.3626 48 1 4.6501 -4.2796 4.3317 49 1 4.6196 -2.4723 5.6096 50 1 6.0918 -1.3932 5.6838 51 1 2.1079 -2.8135 0.8942 52 1 0.2785 -5.5777 1.2677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271942496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:50 Heat of formation + Delta-G solvation = 70.238131 kcal Electronic energy + Delta-G solvation = -29640.111854 eV Core-core repulsion = 25800.192790 eV Total energy + Delta-G solvation = -3839.919064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.16883 -40.35431 -39.57059 -38.63465 -35.27633 -34.90534 -32.28164 -32.10724 -31.77175 -29.83682 -27.53428 -26.82344 -26.79342 -26.63656 -25.30123 -23.88348 -23.22348 -22.79309 -21.26388 -20.59457 -19.51075 -19.01302 -18.33279 -17.26226 -17.10332 -16.86876 -16.18335 -15.94739 -15.81943 -15.64548 -15.31775 -15.24527 -15.13567 -14.95507 -14.88947 -14.33962 -14.23240 -13.94853 -13.74492 -13.49354 -13.41233 -12.91031 -12.83575 -12.72945 -12.55013 -12.51012 -12.39249 -12.26250 -12.21878 -12.05259 -11.98291 -11.92944 -11.74803 -11.44204 -11.34618 -11.28416 -11.20489 -10.91954 -10.74940 -10.04278 -9.79785 -9.57999 -8.94851 -7.86182 -5.13242 0.39590 0.52724 1.42006 1.49926 1.51880 1.58298 2.15841 2.60340 2.79151 3.15519 3.22757 3.39858 3.44325 3.46702 3.60220 3.62938 3.86304 3.92620 4.05127 4.16610 4.20775 4.30173 4.32058 4.34043 4.45513 4.52555 4.60129 4.63617 4.65889 4.72337 4.73998 4.77505 4.87527 4.90328 4.93252 4.93552 4.98391 5.06868 5.07470 5.16059 5.19083 5.22299 5.26814 5.32669 5.51352 5.61443 5.62946 5.65202 5.65749 5.72481 5.77699 6.12673 6.33421 6.56179 7.19363 7.41678 8.12595 8.38078 9.36424 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.002841 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.655897 B = 9854.782929 C =12019.230006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.702 5.702 8 C 0.570 3.430 9 O -0.582 6.582 10 C -0.179 4.179 11 C -0.080 4.080 12 C -0.069 4.069 13 C -0.039 4.039 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.093 4.093 20 C -0.081 4.081 21 N -0.727 5.727 22 C -0.213 4.213 23 H 0.079 0.921 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.956 3.044 27 H -0.296 1.296 28 H -0.303 1.303 29 H -0.269 1.269 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.411 0.589 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.130 0.870 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.372 0.628 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.787 3.709 12.871 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.351 5.351 8 C 0.357 3.643 9 O -0.462 6.462 10 C -0.182 4.182 11 C -0.118 4.118 12 C -0.069 4.069 13 C -0.039 4.039 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.131 4.131 20 C -0.118 4.118 21 N -0.366 5.366 22 C -0.345 4.345 23 H 0.097 0.903 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.787 3.213 27 H -0.224 1.224 28 H -0.230 1.230 29 H -0.194 1.194 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.247 0.753 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.141 0.859 43 H 0.157 0.843 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.148 0.852 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.106 0.894 51 H 0.204 0.796 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.137 4.130 12.426 19.270 hybrid contribution -1.352 -1.050 -0.202 1.724 sum 12.785 3.080 12.224 17.955 Atomic orbital electron populations 1.21727 0.95367 1.01752 1.00309 1.21629 0.96439 0.96319 0.98435 1.21852 1.00889 0.94910 1.02199 1.20677 0.89937 0.86147 0.96821 0.92439 1.21676 0.94710 0.95578 0.88358 1.45894 1.06496 1.52224 1.30529 1.18946 0.82036 0.79293 0.84015 1.90638 1.56571 1.50525 1.48509 1.24161 1.00964 0.98081 0.94990 1.23756 0.93090 0.99265 0.95654 1.22214 0.96655 0.95227 0.92772 1.18392 0.93734 0.97829 0.93963 1.21133 1.00002 0.97580 0.95180 1.21418 0.96518 0.98787 0.97701 1.21522 0.93244 0.99520 0.99988 1.21445 1.01071 0.97070 0.94602 1.21187 0.94353 0.99429 0.98620 1.24586 1.00262 0.92248 0.96007 1.24081 1.00353 0.97413 0.89986 1.42566 1.17258 1.03312 1.73499 1.19446 0.93161 0.92054 1.29819 0.90327 1.25330 1.01111 0.96220 1.03610 1.69810 1.38207 0.99682 1.53997 0.85386 0.81174 0.76693 0.78002 1.22373 1.22986 1.19386 0.93375 0.93089 0.93223 0.93207 0.92369 0.92083 0.92159 0.89890 0.93301 0.75313 0.89533 0.90523 0.85881 0.84252 0.83752 0.83745 0.85175 0.90805 0.90096 0.89364 0.89429 0.79622 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.26 71.98 0.59 -3.97 16 2 C -0.11 -3.45 2.69 -10.79 -0.03 -3.48 16 3 C -0.14 -3.54 8.84 71.98 0.64 -2.90 16 4 C 0.17 6.13 2.18 44.99 0.10 6.22 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 4.04 4.73 86.38 0.41 4.45 16 7 N -0.70 -23.55 5.39 -463.07 -2.50 -26.04 16 8 C 0.57 19.55 7.94 87.66 0.70 20.25 16 9 O -0.58 -23.41 17.10 -3.02 -0.05 -23.47 16 10 C -0.18 -4.97 3.50 -62.85 -0.22 -5.19 16 11 C -0.08 -1.90 7.33 30.61 0.22 -1.68 16 12 C -0.07 -1.53 3.09 -63.68 -0.20 -1.72 16 13 C -0.04 -0.82 5.88 -19.87 -0.12 -0.93 16 14 C -0.12 -2.41 9.74 22.27 0.22 -2.19 16 15 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 16 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 17 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 18 C -0.12 -2.14 9.66 22.27 0.22 -1.93 16 19 C -0.09 -2.47 7.95 31.91 0.25 -2.21 16 20 C -0.08 -1.83 7.84 31.08 0.24 -1.59 16 21 N -0.73 -32.52 4.44 -322.94 -1.43 -33.96 16 22 C -0.21 -10.53 7.57 84.03 0.64 -9.89 16 23 H 0.08 3.75 7.40 -2.91 -0.02 3.73 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 25 N -0.97 -55.95 13.06 21.65 0.28 -55.67 16 26 Si 0.96 43.98 29.55 68.60 2.03 46.01 16 27 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 2.06 6.01 -2.39 -0.01 2.05 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.08 2.53 6.71 -2.39 -0.02 2.51 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.41 13.97 8.14 -92.71 -0.75 13.22 16 40 H 0.09 1.88 7.94 -2.39 -0.02 1.86 16 41 H 0.08 1.83 7.91 -2.39 -0.02 1.82 16 42 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 46 H 0.13 2.07 7.75 -2.91 -0.02 2.05 16 47 H 0.07 2.01 7.91 -2.39 -0.02 1.99 16 48 H 0.08 2.21 7.97 -2.39 -0.02 2.20 16 49 H 0.09 1.92 7.97 -2.38 -0.02 1.91 16 50 H 0.09 1.80 7.93 -2.39 -0.02 1.78 16 51 H 0.37 18.70 7.80 -92.71 -0.72 17.98 16 52 H 0.25 14.15 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -62.49 419.14 2.57 -59.92 By element: Atomic # 1 Polarization: 48.94 SS G_CDS: -0.56 Total: 48.38 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 4.80 Total: -15.16 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.65 Total: -115.67 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -62.49 2.57 -59.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271942496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.157 kcal (2) G-P(sol) polarization free energy of solvation -62.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds