Wall clock time and date at job start Wed Apr 1 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47303 * 2 1 4 4 C 1.52999 * 109.47115 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47116 * 305.77782 * 4 3 2 6 6 N 1.46501 * 109.47231 * 65.78183 * 4 3 2 7 7 C 1.34773 * 119.99435 * 274.99965 * 6 4 3 8 8 N 1.34780 * 119.99319 * 180.02562 * 7 6 4 9 9 O 1.21586 * 120.00632 * 359.97438 * 7 6 4 10 10 C 1.50703 * 109.47033 * 185.78042 * 4 3 2 11 11 O 1.21283 * 120.00124 * 258.76421 * 10 4 3 12 12 N 1.34782 * 119.99877 * 78.76617 * 10 4 3 13 13 C 1.46925 * 120.63003 * 184.60253 * 12 10 4 14 14 C 1.52761 * 109.00589 * 233.58579 * 13 12 10 15 15 C 1.53035 * 109.38260 * 305.58373 * 14 13 12 16 16 O 1.42903 * 109.45150 * 301.22795 * 15 14 13 17 17 C 1.53007 * 109.46198 * 181.26235 * 15 14 13 18 18 N 1.46505 * 109.46789 * 59.93304 * 17 15 14 19 19 C 1.36934 * 119.99543 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00354 * 0.02562 * 19 18 17 21 21 C 1.38821 * 119.99605 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99628 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47176 * 60.00511 * 23 21 19 25 25 H 1.48497 * 109.46711 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47221 * 300.00302 * 23 21 19 27 27 C 1.53042 * 109.53681 * 61.24394 * 15 14 13 28 28 C 1.46924 * 120.62959 * 4.87987 * 12 10 4 29 29 H 1.09003 * 109.47010 * 300.00597 * 1 2 3 30 30 H 1.09005 * 109.46517 * 60.00193 * 1 2 3 31 31 H 1.08999 * 109.47296 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46517 * 119.99807 * 2 1 3 33 33 H 1.08996 * 109.47291 * 239.99228 * 2 1 3 34 34 H 1.09003 * 109.46802 * 299.99776 * 3 2 1 35 35 H 1.09006 * 109.47109 * 59.99547 * 3 2 1 36 36 H 0.96999 * 119.99835 * 94.99723 * 6 4 3 37 37 H 0.97001 * 120.00779 * 359.97438 * 8 7 6 38 38 H 0.96997 * 119.99729 * 180.02562 * 8 7 6 39 39 H 1.09006 * 109.58582 * 353.41293 * 13 12 10 40 40 H 1.08998 * 109.59065 * 113.83876 * 13 12 10 41 41 H 1.09010 * 109.56033 * 185.55041 * 14 13 12 42 42 H 1.08994 * 109.36198 * 65.50145 * 14 13 12 43 43 H 0.96697 * 114.00135 * 300.06646 * 16 15 14 44 44 H 1.08998 * 109.46883 * 179.97438 * 17 15 14 45 45 H 1.08992 * 109.46912 * 299.93531 * 17 15 14 46 46 H 0.97002 * 120.00087 * 0.02562 * 18 17 15 47 47 H 0.97001 * 119.99528 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.49896 * 178.68492 * 27 15 14 49 49 H 1.08999 * 109.50034 * 58.58693 * 27 15 14 50 50 H 1.09000 * 109.58717 * 246.15565 * 28 12 10 51 51 H 1.08994 * 109.58800 * 6.58312 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8417 0.8346 6 7 4.0590 0.8756 -1.2587 7 6 4.1877 -0.4594 -1.3917 8 7 4.6379 -0.9808 -2.5501 9 8 3.8985 -1.1933 -0.4665 10 6 4.0724 2.8560 0.1437 11 8 4.4679 3.4606 -0.8304 12 7 4.0821 3.4484 1.3544 13 6 4.4735 4.8576 1.4951 14 6 5.5848 4.9635 2.5379 15 6 5.1233 4.3060 3.8404 16 8 3.9366 4.9522 4.3054 17 6 6.2230 4.4388 4.8960 18 7 6.5015 5.8571 5.1351 19 6 7.4556 6.2232 6.0466 20 1 8.0031 5.4665 6.5888 21 6 7.7199 7.5671 6.2728 22 7 7.0530 8.4893 5.6117 23 14 9.0219 8.0665 7.5157 24 1 10.3356 7.5062 7.1086 25 1 9.1109 9.5478 7.5712 26 1 8.6541 7.5426 8.8556 27 6 4.8326 2.8243 3.5907 28 6 3.7074 2.6956 2.5592 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.2899 1.4611 -1.9967 37 1 4.8690 -0.3953 -3.2883 38 1 4.7302 -1.9416 -2.6461 39 1 4.8353 5.2336 0.5381 40 1 3.6144 5.4448 1.8195 41 1 5.8140 6.0133 2.7215 42 1 6.4757 4.4552 2.1694 43 1 4.0472 5.8960 4.4846 44 1 5.8943 3.9709 5.8239 45 1 7.1281 3.9455 4.5417 46 1 6.0095 6.5368 4.6484 47 1 7.2380 9.4283 5.7695 48 1 4.5265 2.3513 4.5239 49 1 5.7307 2.3360 3.2124 50 1 2.7846 3.1029 2.9723 51 1 3.5639 1.6457 2.3041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281642947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:21 Heat of formation + Delta-G solvation = -138.375696 kcal Electronic energy + Delta-G solvation = -31674.358392 eV Core-core repulsion = 27414.543891 eV Total energy + Delta-G solvation = -4259.814501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94934 -40.81519 -39.69691 -36.91985 -36.83353 -35.76194 -34.95954 -33.84113 -33.48208 -32.38841 -32.21958 -29.97112 -28.23534 -26.10404 -25.49063 -24.21620 -23.40397 -22.35664 -21.98674 -21.30428 -20.30592 -19.53923 -19.38356 -18.36523 -17.90955 -17.27927 -17.01497 -16.83492 -16.70929 -16.27912 -15.98504 -15.75883 -15.62645 -15.27604 -15.16854 -14.91966 -14.76515 -14.56122 -14.44326 -14.26292 -14.04897 -13.71642 -13.28836 -13.20192 -12.99775 -12.81166 -12.73151 -12.64337 -12.52201 -12.31213 -12.23344 -12.14811 -12.00518 -11.96049 -11.53816 -11.40344 -11.31893 -10.98244 -10.82414 -10.73826 -10.57334 -10.05553 -9.71392 -9.02944 -7.97477 -5.25740 1.36558 1.47459 1.49182 1.55357 1.60912 2.13030 2.22153 2.54332 3.20775 3.27431 3.40220 3.59494 3.65481 3.75334 3.86398 3.91160 3.94795 4.01702 4.20606 4.23303 4.28437 4.35672 4.43168 4.57326 4.66951 4.70299 4.75410 4.78817 4.83105 4.89120 4.93400 4.96526 4.99318 5.07309 5.12783 5.27833 5.29171 5.31115 5.40009 5.46976 5.49614 5.55037 5.85315 6.07374 6.24230 6.29308 6.72745 6.94226 7.04759 7.32284 7.66138 8.03871 8.28234 9.25075 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.002315 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.563360 B =12094.017656 C =12393.778931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.119 4.119 4 C 0.152 3.848 5 H 0.113 0.887 6 N -0.726 5.726 7 C 0.704 3.296 8 N -0.850 5.850 9 O -0.623 6.623 10 C 0.513 3.487 11 O -0.572 6.572 12 N -0.596 5.596 13 C 0.125 3.875 14 C -0.147 4.147 15 C 0.139 3.861 16 O -0.559 6.559 17 C 0.127 3.873 18 N -0.737 5.737 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.069 4.069 22 N -0.964 5.964 23 Si 0.970 3.030 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.279 1.279 27 C -0.117 4.117 28 C 0.111 3.889 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.411 0.589 38 H 0.422 0.578 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.381 0.619 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.376 0.624 47 H 0.252 0.748 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 -18.496 -16.389 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.158 4.158 4 C 0.042 3.958 5 H 0.130 0.870 6 N -0.384 5.384 7 C 0.403 3.597 8 N -0.419 5.419 9 O -0.504 6.504 10 C 0.301 3.699 11 O -0.452 6.452 12 N -0.328 5.328 13 C 0.003 3.997 14 C -0.186 4.186 15 C 0.098 3.902 16 O -0.365 6.365 17 C 0.000 4.000 18 N -0.382 5.382 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.262 4.262 22 N -0.614 5.614 23 Si 0.799 3.201 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.205 1.205 27 C -0.155 4.155 28 C -0.011 4.011 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.247 0.753 37 H 0.242 0.758 38 H 0.256 0.744 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.230 0.770 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.210 0.790 47 H 0.061 0.939 48 H 0.116 0.884 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.667 -19.277 -15.982 27.625 hybrid contribution 1.470 1.759 0.007 2.293 sum -10.197 -17.517 -15.975 25.807 Atomic orbital electron populations 1.21785 0.95165 1.01785 1.02049 1.21448 0.95748 0.94821 1.02428 1.21974 0.91120 0.98901 1.03806 1.20688 0.96073 0.90268 0.88722 0.86984 1.44762 1.71249 1.05646 1.16748 1.15985 0.77944 0.81971 0.83847 1.42806 1.72091 1.12493 1.14502 1.90962 1.58540 1.59848 1.41009 1.20865 0.77492 0.88829 0.82690 1.90659 1.49316 1.66484 1.38697 1.48087 1.65705 1.12081 1.06915 1.21351 0.97666 0.81523 0.99188 1.22318 0.98545 1.01943 0.95772 1.21233 0.84333 0.93777 0.90895 1.86350 1.34291 1.27675 1.88230 1.21469 0.96043 0.85892 0.96567 1.42398 1.45284 1.01994 1.48498 1.19516 1.12401 0.91430 1.14626 0.91058 1.25482 1.02395 0.95880 1.02397 1.69758 1.45604 0.99782 1.46288 0.85269 0.79210 0.76431 0.79176 1.20668 1.22093 1.20507 1.21890 1.00111 0.92693 1.00819 1.21947 0.98217 0.97345 0.83566 0.92061 0.92769 0.92676 0.92172 0.92808 0.91151 0.89322 0.75300 0.75846 0.74438 0.90135 0.90136 0.91356 0.91748 0.77021 0.95689 0.95845 0.79032 0.93891 0.88415 0.89829 0.89188 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.39 16 2 C -0.11 -1.81 4.55 30.59 0.14 -1.67 16 3 C -0.12 -1.91 4.71 30.59 0.14 -1.76 16 4 C 0.15 2.84 1.81 44.25 0.08 2.92 16 5 H 0.11 2.16 5.83 -2.39 -0.01 2.15 16 6 N -0.73 -12.59 5.00 -461.41 -2.31 -14.90 16 7 C 0.70 12.82 7.44 179.05 1.33 14.15 16 8 N -0.85 -8.38 8.88 -184.75 -1.64 -10.02 16 9 O -0.62 -15.57 14.32 -3.99 -0.06 -15.63 16 10 C 0.51 11.93 6.94 87.66 0.61 12.54 16 11 O -0.57 -16.52 15.32 -3.04 -0.05 -16.57 16 12 N -0.60 -13.44 2.98 -819.73 -2.44 -15.88 16 13 C 0.13 3.27 6.18 86.22 0.53 3.81 16 14 C -0.15 -4.42 4.91 30.53 0.15 -4.27 16 15 C 0.14 4.10 0.71 -10.77 -0.01 4.09 16 16 O -0.56 -16.96 11.71 -148.98 -1.74 -18.71 16 17 C 0.13 4.83 5.40 86.38 0.47 5.30 16 18 N -0.74 -35.22 5.07 -343.44 -1.74 -36.96 16 19 C -0.25 -13.47 9.99 84.04 0.84 -12.63 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -3.84 5.50 84.87 0.47 -3.37 16 22 N -0.96 -56.79 13.06 21.65 0.28 -56.51 16 23 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 C -0.12 -2.64 5.11 30.67 0.16 -2.48 16 28 C 0.11 2.09 5.39 86.36 0.47 2.56 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.15 7.89 -2.38 -0.02 1.13 16 33 H 0.05 1.07 5.63 -2.39 -0.01 1.06 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.26 7.43 -2.38 -0.02 1.24 16 36 H 0.41 6.52 7.74 -92.71 -0.72 5.80 16 37 H 0.41 1.90 8.84 -92.71 -0.82 1.08 16 38 H 0.42 3.21 8.93 -92.71 -0.83 2.39 16 39 H 0.08 2.28 7.00 -2.38 -0.02 2.26 16 40 H 0.08 2.03 7.81 -2.39 -0.02 2.01 16 41 H 0.07 2.39 6.82 -2.38 -0.02 2.37 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.38 12.21 7.85 -74.06 -0.58 11.63 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.38 18.49 5.58 -92.71 -0.52 17.98 16 47 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 48 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 49 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.09 1.67 7.81 -2.39 -0.02 1.65 16 51 H 0.11 1.57 5.38 -2.39 -0.01 1.56 16 Total: -1.00 -70.30 395.72 -4.04 -74.34 By element: Atomic # 1 Polarization: 48.15 SS G_CDS: -2.46 Total: 45.69 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 6.09 Total: 17.78 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -7.85 Total: -134.27 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -1.85 Total: -50.90 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -70.30 -4.04 -74.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281642947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.038 kcal (2) G-P(sol) polarization free energy of solvation -70.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds