Wall clock time and date at job start Wed Apr 1 2020 02:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 N 1.46503 * 109.47308 * 120.00144 * 2 1 3 5 5 C 1.46503 * 119.99959 * 119.73731 * 4 2 1 6 6 C 1.52993 * 109.46945 * 270.00009 * 5 4 2 7 7 N 1.46498 * 109.47236 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00137 * 89.99760 * 7 6 5 9 9 C 1.36933 * 120.00077 * 270.00284 * 7 6 5 10 10 H 1.08000 * 120.00340 * 145.18584 * 9 7 6 11 11 C 1.38815 * 120.00108 * 325.18114 * 9 7 6 12 12 N 1.31615 * 120.00097 * 157.82797 * 11 9 7 13 13 Si 1.86799 * 119.99784 * 337.82600 * 11 9 7 14 14 H 1.48504 * 109.47152 * 95.37661 * 13 11 9 15 15 H 1.48501 * 109.47310 * 215.37764 * 13 11 9 16 16 H 1.48501 * 109.47381 * 335.37925 * 13 11 9 17 17 C 1.34773 * 119.99684 * 299.73896 * 4 2 1 18 18 O 1.21281 * 120.00182 * 5.49252 * 17 4 2 19 19 C 1.50703 * 119.99936 * 185.49662 * 17 4 2 20 20 H 1.08997 * 115.53642 * 317.33152 * 19 17 4 21 21 C 1.53046 * 117.48017 * 171.73531 * 19 17 4 22 22 H 1.08999 * 119.40490 * 140.82445 * 21 19 17 23 23 C 1.53439 * 118.58323 * 343.84335 * 21 19 17 24 24 C 1.50964 * 107.03667 * 297.00631 * 23 21 19 25 25 C 1.38789 * 129.72342 * 179.69008 * 24 23 21 26 26 C 1.38013 * 120.30754 * 180.02562 * 25 24 23 27 27 C 1.38258 * 119.88434 * 359.97438 * 26 25 24 28 28 C 1.38009 * 119.88008 * 359.97438 * 27 26 25 29 29 C 1.37816 * 110.46396 * 359.71380 * 24 23 21 30 30 C 1.50943 * 110.47648 * 359.90309 * 29 24 23 31 31 H 1.09001 * 117.43863 * 220.74982 * 30 29 24 32 32 H 1.08996 * 109.47111 * 300.00077 * 1 2 3 33 33 H 1.09000 * 109.47401 * 60.00104 * 1 2 3 34 34 H 1.09005 * 109.46794 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47468 * 240.00093 * 2 1 3 36 36 H 1.08998 * 109.47554 * 181.16004 * 3 2 1 37 37 H 1.09001 * 109.47456 * 301.16359 * 3 2 1 38 38 H 1.09003 * 109.47045 * 61.16028 * 3 2 1 39 39 H 1.09002 * 109.47107 * 30.00012 * 5 4 2 40 40 H 1.09001 * 109.46627 * 149.99989 * 5 4 2 41 41 H 1.09002 * 109.47220 * 299.99933 * 6 5 4 42 42 H 1.09003 * 109.47749 * 60.00030 * 6 5 4 43 43 H 1.08996 * 109.46917 * 85.09765 * 8 7 6 44 44 H 1.08998 * 109.47481 * 205.10047 * 8 7 6 45 45 H 1.08998 * 109.47184 * 325.10294 * 8 7 6 46 46 H 0.97004 * 119.99613 * 180.02562 * 12 11 9 47 47 H 1.08996 * 109.91808 * 56.35323 * 23 21 19 48 48 H 1.09002 * 109.91903 * 177.65988 * 23 21 19 49 49 H 1.07999 * 119.84540 * 0.07487 * 25 24 23 50 50 H 1.08006 * 120.06049 * 179.97438 * 26 25 24 51 51 H 1.07999 * 120.05494 * 179.97438 * 27 26 25 52 52 H 1.08004 * 119.83962 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8559 -1.8851 1.0617 6 6 1.9666 -3.1293 1.0187 7 7 2.8040 -4.3238 0.8849 8 6 3.2920 -5.0142 2.0813 9 6 3.1308 -4.7950 -0.3586 10 1 4.0979 -5.2447 -0.5288 11 6 2.2191 -4.6949 -1.4005 12 7 2.6388 -4.7257 -2.6476 13 14 0.3963 -4.5167 -1.0326 14 1 0.0258 -3.0788 -1.0514 15 1 -0.3898 -5.2439 -2.0615 16 1 0.1038 -5.0858 0.3075 17 6 1.6971 -0.2271 2.4202 18 8 0.9240 0.7004 2.5338 19 6 2.2987 -0.8613 3.6479 20 1 2.3421 -1.9503 3.6408 21 6 2.0504 -0.1729 4.9920 22 1 1.8593 -0.7800 5.8769 23 6 1.5508 1.2779 4.9927 24 6 2.6275 2.1167 4.3476 25 6 2.6608 3.4826 4.1037 26 6 3.7584 4.0544 3.4929 27 6 4.8304 3.2637 3.1224 28 6 4.7993 1.9055 3.3653 29 6 3.6957 1.3284 3.9779 30 6 3.4386 -0.1138 4.3418 31 1 4.2717 -0.6846 4.7519 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 3.1297 1.4426 -0.0208 37 1 1.6597 1.9624 -0.8794 38 1 1.6937 1.9503 0.9002 39 1 3.4354 -1.8207 0.1407 40 1 3.5330 -1.9517 1.9132 41 1 1.3870 -3.1937 1.9397 42 1 1.2893 -3.0627 0.1672 43 1 2.5337 -5.7145 2.4313 44 1 4.2052 -5.5581 1.8400 45 1 3.5001 -4.2835 2.8630 46 1 2.0016 -4.6553 -3.3756 47 1 0.6275 1.3529 4.4183 48 1 1.3827 1.6123 6.0164 49 1 1.8243 4.1010 4.3939 50 1 3.7800 5.1177 3.3046 51 1 5.6905 3.7082 2.6439 52 1 5.6372 1.2885 3.0760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284553397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:36 Heat of formation + Delta-G solvation = 43.667954 kcal Electronic energy + Delta-G solvation = -32018.137299 eV Core-core repulsion = 28177.066066 eV Total energy + Delta-G solvation = -3841.071233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.33929 -40.44897 -38.29749 -37.80623 -36.50899 -34.15281 -33.48323 -32.53854 -31.37500 -29.84369 -28.56557 -28.15881 -27.99161 -25.95431 -24.85405 -23.74029 -22.71429 -22.58535 -21.70517 -21.25155 -19.32266 -18.78729 -18.21694 -17.36519 -17.27671 -16.83298 -16.60493 -16.04396 -15.92453 -15.71114 -15.45216 -15.13562 -14.87695 -14.78995 -14.41897 -14.35947 -14.28212 -14.20387 -13.91981 -13.61821 -13.50444 -13.43761 -13.36172 -13.00978 -12.83770 -12.76310 -12.69060 -12.56583 -12.31635 -12.19688 -12.19380 -11.98212 -11.85845 -11.69761 -11.53199 -11.39276 -11.12024 -10.67429 -10.22604 -9.75613 -9.60261 -9.34094 -8.79264 -8.21977 -5.56881 0.41430 0.53126 1.25618 1.37045 1.45296 1.57907 1.97564 2.37311 2.58278 2.96720 3.03889 3.29370 3.48067 3.58870 3.63495 3.90092 3.98668 4.00984 4.07938 4.09059 4.17752 4.19783 4.26859 4.27686 4.42006 4.49493 4.55806 4.59803 4.61104 4.68195 4.73586 4.76276 4.81021 4.84395 4.86075 4.88437 4.92997 4.98854 4.99948 5.10732 5.14775 5.17327 5.19279 5.23996 5.26670 5.40070 5.57428 5.63224 5.69147 5.78615 5.91114 6.14541 6.14713 6.52270 6.94736 7.28862 7.61066 8.00962 8.97449 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.003891 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.154754 B = 7195.131081 C = 7644.263372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 C -0.146 4.146 4 N -0.603 5.603 5 C 0.108 3.892 6 C 0.125 3.875 7 N -0.622 5.622 8 C 0.121 3.879 9 C -0.257 4.257 10 H 0.053 0.947 11 C -0.012 4.012 12 N -0.943 5.943 13 Si 0.932 3.068 14 H -0.274 1.274 15 H -0.313 1.313 16 H -0.267 1.267 17 C 0.544 3.456 18 O -0.549 6.549 19 C -0.169 4.169 20 H 0.145 0.855 21 C -0.112 4.112 22 H 0.157 0.843 23 C -0.063 4.063 24 C -0.078 4.078 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.135 4.135 28 C -0.111 4.111 29 C -0.096 4.096 30 C -0.096 4.096 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.014 0.986 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.262 0.738 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.127 0.873 50 H 0.142 0.858 51 H 0.140 0.860 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 15.657 16.873 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 C -0.204 4.204 4 N -0.335 5.335 5 C -0.017 4.017 6 C -0.002 4.002 7 N -0.347 5.347 8 C -0.023 4.023 9 C -0.387 4.387 10 H 0.070 0.930 11 C -0.209 4.209 12 N -0.588 5.588 13 Si 0.763 3.237 14 H -0.202 1.202 15 H -0.242 1.242 16 H -0.192 1.192 17 C 0.334 3.666 18 O -0.428 6.428 19 C -0.190 4.190 20 H 0.162 0.838 21 C -0.131 4.131 22 H 0.174 0.826 23 C -0.099 4.099 24 C -0.078 4.078 25 C -0.144 4.144 26 C -0.137 4.137 27 C -0.153 4.153 28 C -0.129 4.129 29 C -0.096 4.096 30 C -0.114 4.114 31 H 0.162 0.838 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.032 0.968 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.145 0.855 50 H 0.160 0.840 51 H 0.158 0.842 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.633 16.118 16.799 23.289 hybrid contribution -0.780 -0.499 -0.935 1.316 sum -0.148 15.620 15.864 22.263 Atomic orbital electron populations 1.22157 0.95113 1.01012 1.03559 1.21038 0.94621 0.93785 0.87092 1.21966 1.00457 0.94950 1.02982 1.48134 1.51476 1.28209 1.05678 1.22140 0.93358 0.83251 1.02947 1.21547 0.93103 0.86445 0.99082 1.44142 1.60944 1.26768 1.02866 1.21248 0.97406 0.95894 0.87727 1.18776 0.97721 1.36196 0.85976 0.92975 1.25860 1.00802 0.99393 0.94858 1.69966 1.35251 1.54277 0.99257 0.86066 0.83368 0.77153 0.77087 1.20169 1.24174 1.19214 1.19995 0.80391 0.82433 0.83789 1.90514 1.35924 1.30140 1.86199 1.22491 1.04050 1.00491 0.91955 0.83776 1.23109 0.97668 0.97145 0.95135 0.82588 1.20464 0.97942 0.90656 1.00872 1.20638 0.95121 0.93968 0.98088 1.20857 0.99193 0.93776 1.00581 1.21297 0.93424 1.00825 0.98201 1.21249 0.99655 0.93404 1.01014 1.20901 0.97846 0.95594 0.98544 1.19843 0.95319 0.93930 1.00499 1.21568 0.93573 0.93386 1.02883 0.83836 0.90670 0.90785 0.94841 0.91075 0.93219 0.90623 0.92002 0.92138 0.88667 0.92309 0.95204 0.96813 0.93590 0.91589 0.92894 0.89065 0.88771 0.85488 0.83988 0.84197 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 9.12 71.98 0.66 -4.57 16 2 C 0.14 4.55 3.28 44.99 0.15 4.70 16 3 C -0.15 -4.24 9.13 71.98 0.66 -3.58 16 4 N -0.60 -19.65 2.42 -797.84 -1.93 -21.58 16 5 C 0.11 3.73 5.41 86.38 0.47 4.20 16 6 C 0.12 4.93 4.85 86.38 0.42 5.35 16 7 N -0.62 -27.26 2.54 -726.95 -1.84 -29.10 16 8 C 0.12 4.17 10.70 127.77 1.37 5.54 16 9 C -0.26 -13.90 9.92 84.03 0.83 -13.06 16 10 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 11 C -0.01 -0.70 5.32 84.86 0.45 -0.24 16 12 N -0.94 -57.41 13.97 21.65 0.30 -57.11 16 13 Si 0.93 46.08 24.90 68.60 1.71 47.79 16 14 H -0.27 -13.03 6.44 99.48 0.64 -12.39 16 15 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 16 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 17 C 0.54 16.56 5.99 87.66 0.52 17.08 16 18 O -0.55 -18.16 9.22 -3.03 -0.03 -18.19 16 19 C -0.17 -4.04 4.64 -11.54 -0.05 -4.09 16 20 H 0.14 3.12 7.13 -2.39 -0.02 3.11 16 21 C -0.11 -2.21 7.05 -10.49 -0.07 -2.29 16 22 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 23 C -0.06 -1.38 5.77 30.08 0.17 -1.21 16 24 C -0.08 -1.90 5.15 -19.75 -0.10 -2.00 16 25 C -0.13 -2.84 10.04 22.35 0.22 -2.61 16 26 C -0.12 -2.42 10.05 22.22 0.22 -2.19 16 27 C -0.14 -2.79 10.05 22.22 0.22 -2.57 16 28 C -0.11 -2.55 10.04 22.35 0.22 -2.32 16 29 C -0.10 -2.32 5.28 -19.76 -0.10 -2.42 16 30 C -0.10 -2.01 6.85 -11.34 -0.08 -2.09 16 31 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.07 2.51 6.01 -2.39 -0.01 2.50 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.03 1.20 7.91 -2.38 -0.02 1.18 16 35 H 0.07 2.55 7.79 -2.39 -0.02 2.54 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.96 6.31 -2.39 -0.02 1.95 16 39 H 0.06 2.39 7.92 -2.39 -0.02 2.37 16 40 H 0.10 2.83 6.56 -2.39 -0.02 2.81 16 41 H 0.06 2.09 7.75 -2.39 -0.02 2.07 16 42 H 0.03 1.36 2.88 -2.39 -0.01 1.36 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.05 1.59 8.00 -2.39 -0.02 1.57 16 45 H 0.07 1.75 8.11 -2.39 -0.02 1.74 16 46 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.09 2.42 6.09 -2.39 -0.01 2.41 16 48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 50 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 51 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 52 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -67.08 400.38 5.22 -61.86 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.83 Total: 24.72 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 6.18 Total: -8.38 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -3.47 Total: -107.79 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.03 Total: -18.19 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.71 Total: 47.79 kcal Total: -67.08 5.22 -61.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284553397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.525 kcal (2) G-P(sol) polarization free energy of solvation -67.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds