Wall clock time and date at job start Wed Apr 1 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 N 1.46504 * 109.46999 * 240.00043 * 2 1 3 5 5 C 1.46497 * 119.99780 * 238.01548 * 4 2 1 6 6 C 1.53001 * 109.47281 * 90.00068 * 5 4 2 7 7 N 1.46502 * 109.46962 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00288 * 90.00267 * 7 6 5 9 9 C 1.36939 * 120.00150 * 269.99519 * 7 6 5 10 10 H 1.08002 * 119.99918 * 327.43911 * 9 7 6 11 11 C 1.38805 * 120.00040 * 147.43514 * 9 7 6 12 12 N 1.31625 * 119.99951 * 154.44367 * 11 9 7 13 13 Si 1.86795 * 120.00349 * 334.44228 * 11 9 7 14 14 H 1.48502 * 109.47165 * 95.43260 * 13 11 9 15 15 H 1.48494 * 109.47564 * 215.43505 * 13 11 9 16 16 H 1.48508 * 109.47139 * 335.43711 * 13 11 9 17 17 C 1.34768 * 120.00185 * 58.01433 * 4 2 1 18 18 O 1.21288 * 120.00012 * 4.41913 * 17 4 2 19 19 C 1.50699 * 120.00190 * 184.42266 * 17 4 2 20 20 H 1.09001 * 115.53997 * 330.23541 * 19 17 4 21 21 C 1.52959 * 117.48540 * 115.82858 * 19 17 4 22 22 H 1.08997 * 118.97589 * 356.69608 * 21 19 17 23 23 C 1.50942 * 118.97932 * 201.36385 * 21 19 17 24 24 C 1.38793 * 129.73216 * 114.94466 * 23 21 19 25 25 C 1.38014 * 120.31748 * 179.97438 * 24 23 21 26 26 C 1.38251 * 119.88716 * 0.02562 * 25 24 23 27 27 C 1.38017 * 119.87680 * 0.02562 * 26 25 24 28 28 C 1.37811 * 110.47677 * 294.97030 * 23 21 19 29 29 C 1.50978 * 110.46316 * 0.09327 * 28 23 21 30 30 C 1.53041 * 117.48254 * 184.64842 * 19 17 4 31 31 H 1.09001 * 119.41300 * 4.09929 * 30 19 17 32 32 H 1.08999 * 109.47057 * 180.13457 * 1 2 3 33 33 H 1.08999 * 109.46994 * 300.12740 * 1 2 3 34 34 H 1.08995 * 109.47359 * 60.13460 * 1 2 3 35 35 H 1.09003 * 109.47415 * 119.99797 * 2 1 3 36 36 H 1.09003 * 109.46808 * 300.00168 * 3 2 1 37 37 H 1.08991 * 109.47200 * 59.99927 * 3 2 1 38 38 H 1.08999 * 109.46726 * 180.02562 * 3 2 1 39 39 H 1.09000 * 109.47424 * 209.99812 * 5 4 2 40 40 H 1.09005 * 109.47413 * 330.00078 * 5 4 2 41 41 H 1.09000 * 109.46949 * 299.99275 * 6 5 4 42 42 H 1.08994 * 109.47353 * 60.00248 * 6 5 4 43 43 H 1.09001 * 109.47790 * 84.73436 * 8 7 6 44 44 H 1.09002 * 109.47618 * 204.73612 * 8 7 6 45 45 H 1.09005 * 109.47050 * 324.73467 * 8 7 6 46 46 H 0.96994 * 119.99926 * 179.97438 * 12 11 9 47 47 H 1.08003 * 119.83631 * 0.02562 * 24 23 21 48 48 H 1.08002 * 120.05187 * 179.97438 * 25 24 23 49 49 H 1.07996 * 120.06145 * 180.02562 * 26 25 24 50 50 H 1.08001 * 119.84155 * 180.02562 * 27 26 25 51 51 H 1.09001 * 109.92012 * 240.94687 * 29 28 23 52 52 H 1.09001 * 109.92123 * 119.64183 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8961 -1.8559 -1.0622 6 6 2.0481 -3.1272 -0.9867 7 7 2.9259 -4.2923 -0.8521 8 6 3.3149 -4.7667 0.4783 9 6 3.3828 -4.9382 -1.9698 10 1 2.7669 -4.9857 -2.8557 11 6 4.6375 -5.5318 -1.9643 12 7 4.8926 -6.5391 -2.7722 13 14 5.9641 -4.9010 -0.8103 14 1 5.9723 -5.7194 0.4289 15 1 7.2875 -4.9988 -1.4768 16 1 5.6871 -3.4834 -0.4654 17 6 1.6601 -0.2540 -2.4198 18 8 0.9998 0.7570 -2.5337 19 6 2.0798 -1.0220 -3.6467 20 1 3.0196 -1.5675 -3.5610 21 6 0.9754 -1.6485 -4.4995 22 1 -0.0593 -1.5668 -4.1666 23 6 1.3221 -2.7953 -5.4177 24 6 0.9040 -4.1183 -5.3816 25 6 1.3479 -5.0153 -6.3318 26 6 2.2135 -4.5953 -7.3246 27 6 2.6311 -3.2803 -7.3615 28 6 2.1854 -2.3768 -6.4070 29 6 2.5019 -0.9094 -6.2453 30 6 1.7358 -0.4178 -5.0101 31 1 1.2667 0.5649 -5.0571 32 1 -0.3633 -1.0277 0.0024 33 1 -0.3633 0.5158 0.8888 34 1 -0.3634 0.5117 -0.8911 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 3.1300 1.4424 -0.0005 39 1 3.5594 -1.9123 -1.9253 40 1 3.4900 -1.7608 -0.1531 41 1 1.3849 -3.0708 -0.1235 42 1 1.4543 -3.2223 -1.8957 43 1 2.5423 -5.4295 0.8680 44 1 4.2579 -5.3090 0.4094 45 1 3.4339 -3.9145 1.1474 46 1 5.7695 -6.9536 -2.7685 47 1 0.2274 -4.4470 -4.6065 48 1 1.0201 -6.0439 -6.2994 49 1 2.5622 -5.2948 -8.0698 50 1 3.3070 -2.9527 -8.1375 51 1 2.1754 -0.3596 -7.1280 52 1 3.5732 -0.7749 -6.0958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284553400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:41 Heat of formation + Delta-G solvation = 53.378553 kcal Electronic energy + Delta-G solvation = -31598.879985 eV Core-core repulsion = 27758.229835 eV Total energy + Delta-G solvation = -3840.650150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.93077 -39.53515 -36.96514 -36.34231 -35.27137 -32.84306 -31.59901 -31.32719 -30.19327 -28.33306 -27.54606 -27.07598 -25.98670 -24.76181 -23.70980 -22.43894 -21.45985 -20.55163 -20.31150 -20.11858 -18.46508 -17.05932 -16.79369 -16.03847 -15.98877 -15.38220 -15.13161 -14.98067 -14.63672 -14.41266 -13.95997 -13.71744 -13.50406 -13.34200 -13.20302 -13.13097 -12.95525 -12.68286 -12.43877 -12.30930 -12.25386 -12.18417 -11.94068 -11.86996 -11.70723 -11.56070 -11.19433 -11.10448 -11.08085 -10.93771 -10.57364 -10.53615 -10.43089 -10.17938 -10.02642 -9.82045 -9.64582 -9.31806 -8.61195 -8.46226 -8.42698 -8.19319 -6.94855 -6.03077 -3.38096 1.58035 1.70675 2.68959 3.08991 3.26278 3.42689 3.44826 3.78759 4.11351 4.43055 4.48588 4.68585 4.88563 4.96323 5.04643 5.05955 5.18720 5.20463 5.25277 5.27359 5.33489 5.38048 5.38461 5.47510 5.52112 5.70562 5.74499 5.77018 5.79240 5.85239 5.91110 5.91400 5.97301 6.00537 6.06088 6.09391 6.17844 6.20407 6.28260 6.33177 6.38213 6.39480 6.44597 6.47042 6.65878 6.73151 6.73423 6.85049 6.91519 6.93252 7.29883 7.63865 7.97045 8.32246 8.42317 8.92592 9.67730 10.04720 11.12433 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.006733 B = 0.006524 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4157.874469 B = 4290.839372 C = 7399.744731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.168 4.168 4 N -0.599 5.599 5 C 0.081 3.919 6 C 0.141 3.859 7 N -0.607 5.607 8 C 0.110 3.890 9 C -0.267 4.267 10 H 0.084 0.916 11 C 0.035 3.965 12 N -0.893 5.893 13 Si 0.872 3.128 14 H -0.288 1.288 15 H -0.303 1.303 16 H -0.272 1.272 17 C 0.554 3.446 18 O -0.547 6.547 19 C -0.150 4.150 20 H 0.129 0.871 21 C -0.085 4.085 22 H 0.117 0.883 23 C -0.065 4.065 24 C -0.084 4.084 25 C -0.111 4.111 26 C -0.114 4.114 27 C -0.111 4.111 28 C -0.095 4.095 29 C -0.052 4.052 30 C -0.129 4.129 31 H 0.130 0.870 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.017 0.983 44 H 0.049 0.951 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.119 0.881 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.116 0.884 51 H 0.084 0.916 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 10.714 -2.417 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 C -0.226 4.226 4 N -0.332 5.332 5 C -0.044 4.044 6 C 0.013 3.987 7 N -0.331 5.331 8 C -0.034 4.034 9 C -0.395 4.395 10 H 0.102 0.898 11 C -0.165 4.165 12 N -0.534 5.534 13 Si 0.703 3.297 14 H -0.216 1.216 15 H -0.231 1.231 16 H -0.197 1.197 17 C 0.343 3.657 18 O -0.426 6.426 19 C -0.171 4.171 20 H 0.147 0.853 21 C -0.104 4.104 22 H 0.135 0.865 23 C -0.065 4.065 24 C -0.102 4.102 25 C -0.129 4.129 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.095 4.095 29 C -0.089 4.089 30 C -0.147 4.147 31 H 0.148 0.852 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.137 0.863 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.134 0.866 51 H 0.102 0.898 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.941 11.095 -2.524 13.328 hybrid contribution 1.238 -0.046 0.923 1.545 sum -5.702 11.049 -1.601 12.537 Atomic orbital electron populations 1.22184 0.94990 1.02242 1.03116 1.20987 0.94575 0.93106 0.87196 1.22207 1.00854 0.96319 1.03189 1.48116 1.49377 1.30631 1.05030 1.22753 0.93586 0.85113 1.02903 1.21246 0.92445 0.85185 0.99829 1.44096 1.57485 1.29207 1.02279 1.21351 0.98806 0.96718 0.86544 1.18825 0.98382 1.28985 0.93333 0.89809 1.25347 0.97209 0.97126 0.96829 1.69904 1.22412 1.20591 1.40457 0.87057 0.82277 0.80237 0.80136 1.21615 1.23106 1.19690 1.19381 0.78860 0.83944 0.83543 1.90576 1.40221 1.25289 1.86519 1.22313 1.01803 1.02917 0.90071 0.85346 1.21247 0.96679 0.92513 0.99938 0.86516 1.19532 0.98116 0.93342 0.95500 1.20652 0.99802 0.91661 0.98103 1.20994 0.97878 0.99300 0.94773 1.20973 0.97853 0.95381 0.98961 1.20522 1.00600 0.93049 0.98721 1.20373 0.97544 0.95612 0.96016 1.20274 1.00650 0.91525 0.96438 1.22913 1.02515 0.98142 0.91177 0.85225 0.92606 0.92199 0.90481 0.89890 0.90305 0.92258 0.92999 0.89845 0.91389 0.94117 0.92486 0.96486 0.93238 0.95619 0.92791 0.86254 0.85885 0.86115 0.86576 0.89750 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.09 37.16 0.34 -1.75 16 2 C 0.14 1.90 3.27 -67.93 -0.22 1.68 16 3 C -0.17 -2.08 9.15 37.16 0.34 -1.74 16 4 N -0.60 -9.08 2.42 -166.10 -0.40 -9.48 16 5 C 0.08 1.37 5.47 -4.04 -0.02 1.35 16 6 C 0.14 2.61 6.02 -4.04 -0.02 2.59 16 7 N -0.61 -13.61 2.56 -181.12 -0.46 -14.08 16 8 C 0.11 2.31 9.39 59.85 0.56 2.87 16 9 C -0.27 -7.06 9.94 -15.06 -0.15 -7.21 16 10 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 11 C 0.04 0.98 5.25 -17.43 -0.09 0.89 16 12 N -0.89 -26.33 13.97 55.49 0.78 -25.56 16 13 Si 0.87 21.41 25.05 -169.99 -4.26 17.15 16 14 H -0.29 -6.93 6.62 56.52 0.37 -6.55 16 15 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.55 8.83 6.86 -10.99 -0.08 8.76 16 18 O -0.55 -9.37 12.58 5.55 0.07 -9.30 16 19 C -0.15 -2.34 4.91 -91.77 -0.45 -2.79 16 20 H 0.13 2.21 6.27 -51.93 -0.33 1.88 16 21 C -0.09 -1.28 6.58 -91.46 -0.60 -1.88 16 22 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 23 C -0.06 -1.04 5.94 -104.45 -0.62 -1.66 16 24 C -0.08 -1.37 10.04 -39.46 -0.40 -1.77 16 25 C -0.11 -1.73 10.04 -39.66 -0.40 -2.13 16 26 C -0.11 -1.66 10.05 -39.66 -0.40 -2.05 16 27 C -0.11 -1.59 10.04 -39.46 -0.40 -1.98 16 28 C -0.10 -1.43 6.12 -104.44 -0.64 -2.07 16 29 C -0.05 -0.66 6.57 -27.52 -0.18 -0.84 16 30 C -0.13 -1.77 6.55 -90.16 -0.59 -2.36 16 31 H 0.13 1.72 7.81 -51.93 -0.41 1.32 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.10 6.17 -51.93 -0.32 0.78 16 35 H 0.08 1.01 7.81 -51.93 -0.41 0.61 16 36 H 0.08 1.13 6.17 -51.93 -0.32 0.81 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.55 6.03 -51.93 -0.31 1.24 16 40 H 0.07 1.14 7.94 -51.93 -0.41 0.72 16 41 H 0.04 0.69 8.07 -51.93 -0.42 0.28 16 42 H 0.06 1.11 7.95 -51.93 -0.41 0.69 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.13 3.11 -51.93 -0.16 0.97 16 45 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 48 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 49 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 50 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 51 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -30.05 407.86 -10.73 -40.78 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.58 Total: 6.44 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -4.02 Total: -12.10 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.09 Total: -49.12 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.26 Total: 17.15 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.05 -10.73 -40.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284553400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.156 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds