Wall clock time and date at job start Wed Apr 1 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46867 * 2 1 4 4 H 1.09001 * 109.47098 * 304.99682 * 3 2 1 5 5 C 1.52997 * 109.47175 * 65.00084 * 3 2 1 6 6 C 1.53005 * 109.46612 * 184.99967 * 3 2 1 7 7 N 1.46900 * 109.47242 * 63.13828 * 6 3 2 8 8 C 1.46902 * 110.99740 * 72.21949 * 7 6 3 9 9 C 1.46897 * 111.00085 * 196.17014 * 7 6 3 10 10 C 1.52996 * 109.47036 * 169.99697 * 9 7 6 11 11 H 1.09005 * 109.49470 * 55.06914 * 10 9 7 12 12 C 1.53050 * 109.52301 * 175.14608 * 10 9 7 13 13 C 1.53041 * 109.53600 * 181.33772 * 12 10 9 14 14 C 1.53627 * 109.24125 * 298.51064 * 13 12 10 15 15 N 1.46933 * 108.54395 * 54.85709 * 14 13 12 16 16 C 1.34774 * 120.62792 * 126.36541 * 15 14 13 17 17 O 1.21280 * 119.99746 * 179.72612 * 16 15 14 18 18 C 1.50705 * 120.00196 * 359.72657 * 16 15 14 19 19 S 1.80995 * 109.47042 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99981 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99624 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00030 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00013 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46843 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46851 * 119.99771 * 24 22 20 27 27 H 1.48496 * 109.46903 * 239.99863 * 24 22 20 28 28 C 1.46928 * 118.73699 * 306.09805 * 15 14 13 29 29 H 1.08997 * 109.46931 * 59.99877 * 1 2 3 30 30 H 1.08997 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46948 * 299.99916 * 1 2 3 32 32 H 1.09001 * 109.46948 * 240.00084 * 2 1 3 33 33 H 1.09001 * 109.47265 * 119.99784 * 2 1 3 34 34 H 1.09001 * 109.47153 * 54.36740 * 5 3 2 35 35 H 1.09005 * 109.47198 * 174.36159 * 5 3 2 36 36 H 1.08995 * 109.47037 * 294.36734 * 5 3 2 37 37 H 1.09002 * 109.47395 * 303.13491 * 6 3 2 38 38 H 1.09003 * 109.46495 * 183.13391 * 6 3 2 39 39 H 1.09004 * 109.46731 * 187.62845 * 8 7 6 40 40 H 1.09005 * 109.47313 * 307.62192 * 8 7 6 41 41 H 1.08993 * 109.47393 * 67.63068 * 8 7 6 42 42 H 1.08999 * 109.47014 * 50.00158 * 9 7 6 43 43 H 1.08996 * 109.47416 * 290.00067 * 9 7 6 44 44 H 1.08997 * 109.45630 * 301.35439 * 12 10 9 45 45 H 1.08996 * 109.45555 * 61.31782 * 12 10 9 46 46 H 1.08993 * 109.50072 * 58.58416 * 13 12 10 47 47 H 1.08997 * 109.49294 * 178.69046 * 13 12 10 48 48 H 1.09004 * 109.74333 * 295.12483 * 14 13 12 49 49 H 1.08998 * 109.66376 * 174.55256 * 14 13 12 50 50 H 1.08990 * 109.46936 * 59.99578 * 18 16 15 51 51 H 1.09000 * 109.46778 * 299.99662 * 18 16 15 52 52 H 0.97007 * 119.99846 * 180.02562 * 23 22 20 53 53 H 1.08999 * 109.58345 * 173.64690 * 28 15 14 54 54 H 1.08995 * 109.58318 * 293.92466 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 7 3.9506 0.8553 -1.4150 8 6 3.6379 1.7660 -2.5244 9 6 5.3726 0.4869 -1.4211 10 6 5.6793 -0.3421 -2.6698 11 1 5.3707 0.2098 -3.5577 12 6 7.1820 -0.6240 -2.7403 13 6 7.4937 -1.4247 -4.0067 14 6 6.7520 -2.7690 -3.9510 15 7 5.3219 -2.5053 -3.7409 16 6 4.3983 -3.0248 -4.5737 17 8 3.2206 -2.8038 -4.3867 18 6 4.8290 -3.8803 -5.7373 19 16 3.3695 -4.4236 -6.6594 20 6 4.1435 -5.3768 -7.9233 21 1 5.2190 -5.4726 -7.9452 22 6 3.3710 -6.0035 -8.8913 23 7 2.0602 -5.8862 -8.8648 24 14 4.1916 -7.0133 -10.2316 25 1 5.6639 -6.9874 -10.0396 26 1 3.7074 -8.4154 -10.1615 27 1 3.8558 -6.4394 -11.5594 28 6 4.9175 -1.6694 -2.6023 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9852 1.5326 2.1517 35 1 2.0826 3.1196 1.3515 36 1 0.5497 2.2148 1.3503 37 1 3.9970 0.8583 0.6854 38 1 3.9327 2.4689 -0.0698 39 1 3.8066 1.2550 -3.4724 40 1 2.5945 2.0742 -2.4585 41 1 4.2807 2.6442 -2.4657 42 1 5.5998 -0.0995 -0.5308 43 1 5.9820 1.3906 -1.4261 44 1 7.7276 0.3193 -2.7636 45 1 7.4853 -1.1972 -1.8642 46 1 7.1680 -0.8628 -4.8819 47 1 8.5669 -1.6051 -4.0680 48 1 7.1379 -3.3686 -3.1265 49 1 6.8908 -3.3036 -4.8907 50 1 5.3697 -4.7513 -5.3672 51 1 5.4788 -3.3010 -6.3932 52 1 1.5203 -6.3246 -9.5411 53 1 3.8455 -1.4783 -2.6518 54 1 5.1546 -2.1822 -1.6702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317036213.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:49 Heat of formation + Delta-G solvation = -75.828472 kcal Electronic energy + Delta-G solvation = -28645.245243 eV Core-core repulsion = 24934.436208 eV Total energy + Delta-G solvation = -3710.809035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20917 -39.58182 -38.26298 -36.31220 -34.58984 -34.07042 -32.44631 -31.05503 -30.56661 -28.16633 -27.73633 -27.35749 -26.06293 -24.91228 -23.64620 -22.31894 -21.24860 -20.54874 -20.30888 -19.44032 -18.10771 -17.10989 -16.88944 -16.83576 -16.57766 -16.23316 -15.98647 -15.64635 -15.58555 -15.43379 -14.96745 -14.52689 -14.49978 -14.42463 -14.24550 -14.02256 -13.91674 -13.46271 -13.39343 -13.16153 -12.95975 -12.92993 -12.91441 -12.84098 -12.69991 -12.62075 -12.50213 -12.25719 -11.96083 -11.79686 -11.70412 -11.62952 -11.45630 -11.41048 -11.30166 -11.16164 -11.12136 -10.79081 -10.25521 -9.60966 -9.15252 -8.67741 -8.34776 -6.13332 1.26133 1.41286 1.46268 1.57658 1.61422 2.16020 2.27336 2.96849 2.99205 3.26535 3.69086 3.76534 3.87032 3.89516 4.05710 4.06968 4.10383 4.20799 4.23340 4.26629 4.41863 4.42491 4.44599 4.46849 4.56445 4.63088 4.63675 4.70540 4.73900 4.76733 4.77507 4.81793 4.85576 4.90940 4.96351 4.97852 5.06130 5.13846 5.16446 5.18303 5.20618 5.26372 5.29514 5.37189 5.41469 5.48100 5.55552 5.62486 5.65105 6.15767 6.19802 6.23358 6.36274 7.06190 7.19874 8.74825 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.002473 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.070896 B =11320.073318 C =12905.818395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.085 4.085 4 H 0.059 0.941 5 C -0.142 4.142 6 C 0.065 3.935 7 N -0.554 5.554 8 C 0.028 3.972 9 C 0.070 3.930 10 C -0.090 4.090 11 H 0.056 0.944 12 C -0.107 4.107 13 C -0.129 4.129 14 C 0.096 3.904 15 N -0.608 5.608 16 C 0.529 3.471 17 O -0.567 6.567 18 C -0.121 4.121 19 S -0.154 6.154 20 C -0.543 4.543 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.274 1.274 28 C 0.129 3.871 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.102 0.898 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.105 0.895 51 H 0.104 0.896 52 H 0.271 0.729 53 H 0.067 0.933 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.497 16.814 20.759 29.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.104 4.104 4 H 0.077 0.923 5 C -0.200 4.200 6 C -0.063 4.063 7 N -0.278 5.278 8 C -0.121 4.121 9 C -0.058 4.058 10 C -0.110 4.110 11 H 0.074 0.926 12 C -0.145 4.145 13 C -0.167 4.167 14 C -0.026 4.026 15 N -0.342 5.342 16 C 0.317 3.683 17 O -0.445 6.445 18 C -0.272 4.272 19 S 0.073 5.927 20 C -0.691 4.691 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.199 1.199 28 C 0.008 3.992 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.120 0.880 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.124 0.876 51 H 0.122 0.878 52 H 0.080 0.920 53 H 0.085 0.915 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.348 16.679 20.917 28.684 hybrid contribution 1.437 -0.238 -1.282 1.940 sum 11.784 16.441 19.635 28.190 Atomic orbital electron populations 1.21819 0.96460 1.01140 1.01616 1.21406 0.95108 0.96543 1.01558 1.21138 0.94775 0.96106 0.98393 0.92306 1.21803 1.01567 1.00273 0.96347 1.22169 0.95658 0.97754 0.90709 1.61871 1.19181 1.43140 1.03605 1.22346 1.01102 0.94352 0.94252 1.22108 0.87363 0.98430 0.97948 1.21480 0.96337 0.94762 0.98418 0.92599 1.21530 0.93551 1.01105 0.98306 1.21965 1.01364 0.94892 0.98458 1.22162 0.78322 0.98697 1.03387 1.48184 1.07312 1.50416 1.28299 1.20138 0.85560 0.79625 0.82998 1.90675 1.19167 1.60902 1.73793 1.23351 1.03371 1.02148 0.98353 1.85618 1.10041 1.64949 1.32081 1.23215 0.95772 1.36098 1.14034 0.89937 1.26159 0.95414 0.97384 1.00321 1.70203 1.05946 1.43096 1.35603 0.84886 0.78782 0.77367 0.76786 1.17918 1.19875 1.19905 1.21526 1.00264 0.90295 0.87165 0.93754 0.93720 0.91557 0.93118 0.92213 0.92158 0.92232 0.92314 0.90203 0.94153 0.93057 0.91704 0.94719 0.89481 0.93305 0.90148 0.90052 0.92853 0.87951 0.89154 0.89786 0.87649 0.87783 0.92000 0.91459 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.67 71.98 0.70 -2.30 16 2 C -0.11 -2.16 5.34 30.60 0.16 -2.00 16 3 C -0.09 -1.37 2.39 -10.79 -0.03 -1.40 16 4 H 0.06 1.08 6.54 -2.39 -0.02 1.06 16 5 C -0.14 -1.75 8.80 71.98 0.63 -1.11 16 6 C 0.06 0.96 4.39 86.30 0.38 1.34 16 7 N -0.55 -10.20 3.57 -922.45 -3.29 -13.50 16 8 C 0.03 0.54 9.12 127.69 1.16 1.70 16 9 C 0.07 1.04 4.35 86.30 0.38 1.42 16 10 C -0.09 -1.67 2.25 -10.72 -0.02 -1.70 16 11 H 0.06 1.29 6.42 -2.38 -0.02 1.28 16 12 C -0.11 -1.39 5.17 30.62 0.16 -1.23 16 13 C -0.13 -1.94 6.10 30.82 0.19 -1.75 16 14 C 0.10 1.93 6.37 86.51 0.55 2.48 16 15 N -0.61 -17.67 2.97 -818.06 -2.43 -20.10 16 16 C 0.53 21.41 7.72 87.66 0.68 22.08 16 17 O -0.57 -28.32 15.27 -3.03 -0.05 -28.37 16 18 C -0.12 -5.10 4.50 71.24 0.32 -4.78 16 19 S -0.15 -8.87 20.57 -56.49 -1.16 -10.03 16 20 C -0.54 -31.62 9.50 67.95 0.65 -30.97 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.68 5.49 84.86 0.47 1.15 16 23 N -0.91 -56.96 13.22 21.65 0.29 -56.67 16 24 Si 1.00 44.12 29.55 68.60 2.03 46.15 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C 0.13 3.31 5.53 86.36 0.48 3.79 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.06 6.69 -2.39 -0.02 1.04 16 32 H 0.05 1.32 7.56 -2.39 -0.02 1.30 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.06 0.72 6.85 -2.39 -0.02 0.71 16 37 H 0.08 1.07 7.80 -2.39 -0.02 1.05 16 38 H 0.04 0.54 8.05 -2.39 -0.02 0.52 16 39 H 0.05 1.21 6.54 -2.38 -0.02 1.19 16 40 H 0.06 1.29 6.42 -2.38 -0.02 1.27 16 41 H 0.03 0.57 8.10 -2.39 -0.02 0.55 16 42 H 0.09 1.12 7.86 -2.39 -0.02 1.10 16 43 H 0.05 0.62 8.09 -2.39 -0.02 0.60 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 46 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.08 1.77 5.93 -2.39 -0.01 1.76 16 50 H 0.11 4.03 7.93 -2.40 -0.02 4.01 16 51 H 0.10 4.00 7.70 -2.39 -0.02 3.98 16 52 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 53 H 0.07 2.25 6.78 -2.39 -0.02 2.24 16 54 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -76.83 424.11 3.07 -73.76 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.84 Total: 22.02 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 6.85 Total: -13.27 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -5.43 Total: -90.27 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -76.83 3.07 -73.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317036213.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.065 kcal (2) G-P(sol) polarization free energy of solvation -76.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds