Wall clock time and date at job start Wed Apr 1 2020 01:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 C 1.52992 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47297 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47035 * 304.99774 * 5 4 3 7 7 N 1.46497 * 109.46824 * 64.99890 * 5 4 3 8 8 C 1.34773 * 120.00111 * 60.00135 * 7 5 4 9 9 N 1.34778 * 120.00085 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00223 * 0.02562 * 8 7 5 11 11 C 1.50698 * 109.47003 * 185.00207 * 5 4 3 12 12 O 1.21284 * 119.99948 * 259.99911 * 11 5 4 13 13 N 1.34778 * 120.00416 * 80.00140 * 11 5 4 14 14 C 1.46497 * 120.00018 * 179.97438 * 13 11 5 15 15 C 1.52994 * 109.47023 * 179.97438 * 14 13 11 16 16 O 1.42904 * 110.78528 * 298.21568 * 15 14 13 17 17 C 1.55156 * 110.72299 * 174.97630 * 15 14 13 18 18 C 1.54910 * 101.58708 * 206.13881 * 17 15 14 19 19 N 1.47428 * 104.82764 * 37.00602 * 18 17 15 20 20 C 1.36938 * 125.64146 * 155.89828 * 19 18 17 21 21 H 1.07997 * 120.00413 * 353.85637 * 20 19 18 22 22 C 1.38819 * 119.99422 * 173.86120 * 20 19 18 23 23 N 1.31615 * 120.00471 * 6.82689 * 22 20 19 24 24 Si 1.86801 * 119.99743 * 186.81789 * 22 20 19 25 25 H 1.48500 * 109.46814 * 94.98747 * 24 22 20 26 26 H 1.48499 * 109.47439 * 214.98451 * 24 22 20 27 27 H 1.48499 * 109.47348 * 334.99047 * 24 22 20 28 28 C 1.47018 * 108.70474 * 335.87276 * 19 18 17 29 29 H 1.08994 * 109.47307 * 299.99960 * 1 2 3 30 30 H 1.09003 * 109.46942 * 60.00486 * 1 2 3 31 31 H 1.09002 * 109.46744 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46765 * 240.00390 * 2 1 3 33 33 H 1.08998 * 109.47289 * 120.00168 * 2 1 3 34 34 H 1.09001 * 109.46760 * 59.99632 * 3 2 1 35 35 H 1.09001 * 109.46735 * 300.00096 * 3 2 1 36 36 H 1.09008 * 109.47202 * 59.99914 * 4 3 2 37 37 H 1.08998 * 109.47125 * 300.00236 * 4 3 2 38 38 H 0.97001 * 120.00153 * 239.99693 * 7 5 4 39 39 H 0.96998 * 119.99791 * 0.02562 * 9 8 7 40 40 H 0.97001 * 119.99994 * 179.97438 * 9 8 7 41 41 H 0.97001 * 119.99793 * 359.97438 * 13 11 5 42 42 H 1.09007 * 109.47031 * 59.99726 * 14 13 11 43 43 H 1.08994 * 109.47252 * 299.99705 * 14 13 11 44 44 H 0.96705 * 113.99397 * 61.77771 * 16 15 14 45 45 H 1.09002 * 111.00195 * 324.21553 * 17 15 14 46 46 H 1.08997 * 111.00645 * 88.06100 * 17 15 14 47 47 H 1.08991 * 110.37115 * 155.84632 * 18 17 15 48 48 H 1.08999 * 110.36433 * 278.17253 * 18 17 15 49 49 H 0.96997 * 120.00344 * 180.02562 * 23 22 20 50 50 H 1.09008 * 109.88304 * 241.63806 * 28 19 18 51 51 H 1.09001 * 109.87741 * 120.47870 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6450 3.4247 -0.8413 7 7 3.6928 3.5393 1.2523 8 6 4.1178 3.0432 2.4312 9 7 3.7621 3.6453 3.5833 10 8 4.8230 2.0529 2.4553 11 6 5.5818 2.8870 -0.1245 12 8 6.2718 3.0394 0.8612 13 7 6.1582 2.7194 -1.3312 14 6 7.6182 2.7218 -1.4522 15 6 8.0088 2.5135 -2.9167 16 8 7.5437 1.2481 -3.3906 17 6 9.5448 2.6365 -3.0981 18 6 9.6489 3.0780 -4.5793 19 7 8.5025 3.9819 -4.7850 20 6 8.4186 4.9596 -5.7400 21 1 9.2748 5.1855 -6.3583 22 6 7.2330 5.6605 -5.9134 23 7 6.2341 5.4817 -5.0752 24 14 7.0553 6.8578 -7.3362 25 1 6.4044 6.1724 -8.4815 26 1 6.2222 8.0114 -6.9114 27 1 8.3980 7.3414 -7.7469 28 6 7.4642 3.6593 -3.7954 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9330 0.9289 -0.8909 37 1 3.9337 0.9286 0.8891 38 1 3.1307 4.3296 1.2332 39 1 3.1999 4.4355 3.5641 40 1 4.0677 3.2880 4.4317 41 1 5.6064 2.5972 -2.1195 42 1 8.0342 1.9160 -0.8474 43 1 8.0101 3.6773 -1.1037 44 1 6.5818 1.1502 -3.3710 45 1 9.9570 3.3964 -2.4340 46 1 10.0350 1.6757 -2.9414 47 1 10.5855 3.6078 -4.7524 48 1 9.5735 2.2136 -5.2389 49 1 5.4055 5.9711 -5.1966 50 1 6.5552 3.3370 -4.3034 51 1 7.2563 4.5332 -3.1780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325168453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:01 Heat of formation + Delta-G solvation = -100.396488 kcal Electronic energy + Delta-G solvation = -31687.379422 eV Core-core repulsion = 27429.211823 eV Total energy + Delta-G solvation = -4258.167599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.56264 -39.14080 -38.09307 -36.29127 -35.02950 -34.23936 -33.86061 -33.52550 -32.22492 -30.66575 -29.51682 -28.10852 -26.88200 -25.50905 -23.64550 -22.84252 -21.73426 -20.96459 -20.41045 -19.79985 -19.62439 -18.63560 -17.74846 -17.07855 -16.69208 -16.16341 -15.91389 -15.49393 -15.13878 -14.71925 -14.52679 -14.35793 -14.19420 -14.01918 -13.95919 -13.88904 -13.39694 -13.31207 -12.86197 -12.83765 -12.68506 -12.22937 -12.10127 -11.80031 -11.58478 -11.41031 -11.25960 -11.19633 -11.02961 -10.86047 -10.74540 -10.65806 -10.45370 -10.27700 -10.05500 -10.00320 -9.80989 -9.74059 -9.57381 -9.26234 -8.83902 -8.69825 -8.66088 -6.87506 -5.79401 -3.09799 2.68658 3.00612 3.29039 3.36767 3.42645 3.43712 3.56441 4.41542 4.45016 4.57691 4.63213 4.77823 4.80903 4.97241 4.99147 5.12123 5.16228 5.27144 5.36163 5.49144 5.52216 5.56047 5.58959 5.66009 5.69539 5.73992 5.89774 5.96117 6.02107 6.04667 6.11546 6.21229 6.25393 6.33658 6.40870 6.47608 6.62187 6.64295 6.72667 6.90499 6.92115 7.30401 7.42746 7.69990 7.74989 7.95266 8.11551 8.17969 8.51669 8.76838 9.15569 9.76467 10.43144 11.33576 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.002919 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.446587 B = 9590.777714 C =10157.521582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.134 4.134 5 C 0.154 3.846 6 H 0.111 0.889 7 N -0.731 5.731 8 C 0.711 3.289 9 N -0.873 5.873 10 O -0.564 6.564 11 C 0.500 3.500 12 O -0.512 6.512 13 N -0.723 5.723 14 C 0.114 3.886 15 C 0.086 3.914 16 O -0.550 6.550 17 C -0.115 4.115 18 C 0.136 3.864 19 N -0.604 5.604 20 C -0.224 4.224 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.924 5.924 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.164 3.836 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.398 0.602 39 H 0.392 0.608 40 H 0.412 0.588 41 H 0.399 0.601 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.367 0.633 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.026 0.974 49 H 0.251 0.749 50 H 0.049 0.951 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 -6.226 13.355 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.173 4.173 5 C 0.044 3.956 6 H 0.129 0.871 7 N -0.388 5.388 8 C 0.409 3.591 9 N -0.441 5.441 10 O -0.439 6.439 11 C 0.284 3.716 12 O -0.386 6.386 13 N -0.377 5.377 14 C -0.011 4.011 15 C 0.045 3.955 16 O -0.355 6.355 17 C -0.154 4.154 18 C 0.010 3.990 19 N -0.331 5.331 20 C -0.353 4.353 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.572 5.572 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.039 3.961 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.232 0.768 39 H 0.219 0.781 40 H 0.243 0.757 41 H 0.234 0.766 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.214 0.786 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.043 0.957 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.639 -6.920 13.770 18.177 hybrid contribution -1.452 1.507 -0.766 2.228 sum -11.092 -5.413 13.004 17.928 Atomic orbital electron populations 1.21768 0.96025 1.01448 1.01654 1.21516 0.95623 0.96933 1.02179 1.21551 0.94589 0.96923 1.01961 1.22006 0.95974 0.94469 1.04839 1.20719 0.92251 0.96028 0.86610 0.87080 1.44671 1.56564 1.33355 1.04195 1.15832 0.79538 0.83183 0.80509 1.42973 1.58953 1.34449 1.07754 1.90959 1.40025 1.27076 1.85847 1.20783 0.90564 0.77083 0.83206 1.90741 1.64320 1.47054 1.36473 1.45876 1.07861 1.74588 1.09337 1.21876 0.79996 1.02256 0.96940 1.22903 0.96218 0.85391 0.91032 1.86515 1.26069 1.35195 1.87745 1.22704 0.92511 1.01089 0.99098 1.21559 0.91675 0.93216 0.92528 1.44387 1.14384 1.37519 1.36789 1.19109 0.97038 1.09808 1.09301 0.90301 1.24784 0.96147 1.00412 0.99111 1.69923 1.04911 1.45456 1.36902 0.86098 0.77544 0.80109 0.82044 1.21638 1.21826 1.20653 1.21775 0.91691 0.92880 0.89761 0.92999 0.92701 0.92934 0.91852 0.92112 0.92075 0.91877 0.90630 0.88729 0.76790 0.78081 0.75655 0.76646 0.91478 0.90857 0.78600 0.90306 0.90935 0.94128 0.95672 0.93872 0.93311 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.05 5.93 -26.73 -0.16 -1.20 16 3 C -0.11 -0.96 5.10 -26.73 -0.14 -1.10 16 4 C -0.13 -1.44 4.54 -26.73 -0.12 -1.56 16 5 C 0.15 1.77 3.01 -69.08 -0.21 1.56 16 6 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 7 N -0.73 -7.63 4.66 -59.81 -0.28 -7.91 16 8 C 0.71 9.16 7.59 -86.92 -0.66 8.50 16 9 N -0.87 -7.33 8.88 27.63 0.25 -7.08 16 10 O -0.56 -9.99 13.03 -18.20 -0.24 -10.23 16 11 C 0.50 7.87 6.82 -10.99 -0.07 7.80 16 12 O -0.51 -10.22 13.68 -17.94 -0.25 -10.46 16 13 N -0.72 -10.82 5.18 -60.30 -0.31 -11.13 16 14 C 0.11 1.92 4.74 -4.05 -0.02 1.90 16 15 C 0.09 1.57 0.91 -88.79 -0.08 1.48 16 16 O -0.55 -9.58 13.10 -35.23 -0.46 -10.04 16 17 C -0.12 -2.07 6.26 -24.58 -0.15 -2.23 16 18 C 0.14 2.87 7.23 -2.53 -0.02 2.85 16 19 N -0.60 -15.20 3.39 -170.07 -0.58 -15.78 16 20 C -0.22 -6.16 10.26 -15.06 -0.15 -6.31 16 21 H 0.08 2.11 7.84 -52.49 -0.41 1.69 16 22 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 23 N -0.92 -25.69 10.36 55.49 0.58 -25.11 16 24 Si 0.91 21.63 29.56 -169.99 -5.02 16.61 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.16 3.72 4.16 -3.07 -0.01 3.71 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.53 7.75 -51.93 -0.40 0.12 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.09 1.31 6.04 -51.93 -0.31 1.00 16 38 H 0.40 2.82 8.84 -40.82 -0.36 2.46 16 39 H 0.39 1.96 8.84 -40.82 -0.36 1.60 16 40 H 0.41 3.17 8.93 -40.82 -0.36 2.81 16 41 H 0.40 5.29 7.40 -40.82 -0.30 4.99 16 42 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 43 H 0.07 1.35 8.13 -51.93 -0.42 0.92 16 44 H 0.37 5.16 8.14 45.56 0.37 5.53 16 45 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 50 H 0.05 1.20 7.28 -51.92 -0.38 0.82 16 51 H 0.05 1.30 7.23 -51.93 -0.38 0.93 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -36.89 405.57 -9.68 -46.57 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -7.95 Total: 14.12 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -1.53 Total: 14.33 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.35 Total: -67.01 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.94 Total: -30.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.89 -9.68 -46.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325168453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.826 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds