Wall clock time and date at job start Wed Apr 1 2020 01:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 C 1.52992 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47297 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47035 * 304.99774 * 5 4 3 7 7 N 1.46497 * 109.46824 * 64.99890 * 5 4 3 8 8 C 1.34773 * 120.00111 * 60.00135 * 7 5 4 9 9 N 1.34778 * 120.00085 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00223 * 0.02562 * 8 7 5 11 11 C 1.50698 * 109.47003 * 185.00207 * 5 4 3 12 12 O 1.21284 * 119.99948 * 259.99911 * 11 5 4 13 13 N 1.34778 * 120.00416 * 80.00140 * 11 5 4 14 14 C 1.46497 * 120.00018 * 179.97438 * 13 11 5 15 15 C 1.52994 * 109.47023 * 179.97438 * 14 13 11 16 16 O 1.42904 * 110.78528 * 298.21568 * 15 14 13 17 17 C 1.55156 * 110.72299 * 174.97630 * 15 14 13 18 18 C 1.54910 * 101.58708 * 206.13881 * 17 15 14 19 19 N 1.47428 * 104.82764 * 37.00602 * 18 17 15 20 20 C 1.36938 * 125.64146 * 155.89828 * 19 18 17 21 21 H 1.07997 * 120.00413 * 353.85637 * 20 19 18 22 22 C 1.38819 * 119.99422 * 173.86120 * 20 19 18 23 23 N 1.31615 * 120.00471 * 6.82689 * 22 20 19 24 24 Si 1.86801 * 119.99743 * 186.81789 * 22 20 19 25 25 H 1.48500 * 109.46814 * 94.98747 * 24 22 20 26 26 H 1.48499 * 109.47439 * 214.98451 * 24 22 20 27 27 H 1.48499 * 109.47348 * 334.99047 * 24 22 20 28 28 C 1.47018 * 108.70474 * 335.87276 * 19 18 17 29 29 H 1.08994 * 109.47307 * 299.99960 * 1 2 3 30 30 H 1.09003 * 109.46942 * 60.00486 * 1 2 3 31 31 H 1.09002 * 109.46744 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46765 * 240.00390 * 2 1 3 33 33 H 1.08998 * 109.47289 * 120.00168 * 2 1 3 34 34 H 1.09001 * 109.46760 * 59.99632 * 3 2 1 35 35 H 1.09001 * 109.46735 * 300.00096 * 3 2 1 36 36 H 1.09008 * 109.47202 * 59.99914 * 4 3 2 37 37 H 1.08998 * 109.47125 * 300.00236 * 4 3 2 38 38 H 0.97001 * 120.00153 * 239.99693 * 7 5 4 39 39 H 0.96998 * 119.99791 * 0.02562 * 9 8 7 40 40 H 0.97001 * 119.99994 * 179.97438 * 9 8 7 41 41 H 0.97001 * 119.99793 * 359.97438 * 13 11 5 42 42 H 1.09007 * 109.47031 * 59.99726 * 14 13 11 43 43 H 1.08994 * 109.47252 * 299.99705 * 14 13 11 44 44 H 0.96705 * 113.99397 * 61.77771 * 16 15 14 45 45 H 1.09002 * 111.00195 * 324.21553 * 17 15 14 46 46 H 1.08997 * 111.00645 * 88.06100 * 17 15 14 47 47 H 1.08991 * 110.37115 * 155.84632 * 18 17 15 48 48 H 1.08999 * 110.36433 * 278.17253 * 18 17 15 49 49 H 0.96997 * 120.00344 * 180.02562 * 23 22 20 50 50 H 1.09008 * 109.88304 * 241.63806 * 28 19 18 51 51 H 1.09001 * 109.87741 * 120.47870 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6450 3.4247 -0.8413 7 7 3.6928 3.5393 1.2523 8 6 4.1178 3.0432 2.4312 9 7 3.7621 3.6453 3.5833 10 8 4.8230 2.0529 2.4553 11 6 5.5818 2.8870 -0.1245 12 8 6.2718 3.0394 0.8612 13 7 6.1582 2.7194 -1.3312 14 6 7.6182 2.7218 -1.4522 15 6 8.0088 2.5135 -2.9167 16 8 7.5437 1.2481 -3.3906 17 6 9.5448 2.6365 -3.0981 18 6 9.6489 3.0780 -4.5793 19 7 8.5025 3.9819 -4.7850 20 6 8.4186 4.9596 -5.7400 21 1 9.2748 5.1855 -6.3583 22 6 7.2330 5.6605 -5.9134 23 7 6.2341 5.4817 -5.0752 24 14 7.0553 6.8578 -7.3362 25 1 6.4044 6.1724 -8.4815 26 1 6.2222 8.0114 -6.9114 27 1 8.3980 7.3414 -7.7469 28 6 7.4642 3.6593 -3.7954 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9330 0.9289 -0.8909 37 1 3.9337 0.9286 0.8891 38 1 3.1307 4.3296 1.2332 39 1 3.1999 4.4355 3.5641 40 1 4.0677 3.2880 4.4317 41 1 5.6064 2.5972 -2.1195 42 1 8.0342 1.9160 -0.8474 43 1 8.0101 3.6773 -1.1037 44 1 6.5818 1.1502 -3.3710 45 1 9.9570 3.3964 -2.4340 46 1 10.0350 1.6757 -2.9414 47 1 10.5855 3.6078 -4.7524 48 1 9.5735 2.2136 -5.2389 49 1 5.4055 5.9711 -5.1966 50 1 6.5552 3.3370 -4.3034 51 1 7.2563 4.5332 -3.1780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325168453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:00 Heat of formation + Delta-G solvation = -131.175802 kcal Electronic energy + Delta-G solvation = -31688.714113 eV Core-core repulsion = 27429.211823 eV Total energy + Delta-G solvation = -4259.502290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64945 -40.49684 -39.44622 -37.15380 -36.69411 -35.22750 -35.13634 -34.38250 -34.10501 -31.63925 -31.03791 -29.65928 -28.12852 -27.06398 -25.20864 -23.72493 -22.78458 -22.13934 -21.65983 -21.32137 -20.85350 -19.56114 -19.05465 -18.60356 -17.96467 -17.55583 -16.95472 -16.59873 -16.30995 -16.28671 -15.79502 -15.64237 -15.51686 -15.33353 -15.18083 -14.90338 -14.76125 -14.42577 -14.17922 -13.99475 -13.92491 -13.56655 -13.44138 -13.29841 -13.01982 -12.73168 -12.70032 -12.37989 -12.17720 -12.11610 -12.00659 -11.92967 -11.77209 -11.76216 -11.67466 -11.43368 -11.20361 -10.85188 -10.80737 -10.69586 -10.44751 -10.06932 -9.83817 -8.86811 -7.85128 -5.17863 1.48448 1.49646 1.57798 1.63944 1.91224 2.25560 2.50658 2.51360 3.20160 3.33432 3.46891 3.66266 3.72091 3.89631 3.92598 3.94825 3.98449 4.04394 4.19422 4.27268 4.44385 4.48012 4.54597 4.57417 4.72942 4.82068 4.86716 4.89546 4.95788 5.01438 5.03104 5.06292 5.24243 5.32248 5.34426 5.39535 5.40865 5.43475 5.52311 5.53138 5.55662 5.68744 5.97928 6.13677 6.20178 6.54484 6.78833 7.12274 7.21104 7.30786 7.77233 7.86852 8.43136 9.25854 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.002919 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.446587 B = 9590.777714 C =10157.521582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.126 4.126 5 C 0.157 3.843 6 H 0.142 0.858 7 N -0.721 5.721 8 C 0.702 3.298 9 N -0.855 5.855 10 O -0.616 6.616 11 C 0.494 3.506 12 O -0.557 6.557 13 N -0.716 5.716 14 C 0.125 3.875 15 C 0.105 3.895 16 O -0.553 6.553 17 C -0.109 4.109 18 C 0.131 3.869 19 N -0.627 5.627 20 C -0.246 4.246 21 H 0.078 0.922 22 C -0.058 4.058 23 N -0.941 5.941 24 Si 0.974 3.026 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.274 1.274 28 C 0.179 3.821 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.417 0.583 39 H 0.411 0.589 40 H 0.416 0.584 41 H 0.408 0.592 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.383 0.617 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.047 0.953 48 H 0.023 0.977 49 H 0.249 0.751 50 H 0.026 0.974 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 -6.024 13.026 18.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.165 4.165 5 C 0.047 3.953 6 H 0.160 0.840 7 N -0.378 5.378 8 C 0.400 3.600 9 N -0.424 5.424 10 O -0.495 6.495 11 C 0.280 3.720 12 O -0.433 6.433 13 N -0.370 5.370 14 C 0.000 4.000 15 C 0.064 3.936 16 O -0.360 6.360 17 C -0.148 4.148 18 C 0.006 3.994 19 N -0.354 5.354 20 C -0.375 4.375 21 H 0.096 0.904 22 C -0.252 4.252 23 N -0.590 5.590 24 Si 0.803 3.197 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.199 1.199 28 C 0.053 3.947 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.241 0.759 40 H 0.248 0.752 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.232 0.768 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.066 0.934 48 H 0.040 0.960 49 H 0.058 0.942 50 H 0.044 0.956 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -10.833 -6.688 13.438 18.511 hybrid contribution -1.079 1.437 -0.665 1.915 sum -11.911 -5.252 12.774 18.238 Atomic orbital electron populations 1.21746 0.94982 1.01853 1.02068 1.21514 0.96515 0.96709 1.01616 1.21496 0.92663 0.97236 1.02778 1.21916 0.97520 0.93495 1.03542 1.20813 0.89232 0.97233 0.88009 0.84038 1.44544 1.56243 1.33750 1.03296 1.16155 0.79238 0.82860 0.81749 1.42777 1.58361 1.34561 1.06728 1.90929 1.42415 1.29446 1.86715 1.21607 0.92334 0.75687 0.82402 1.90721 1.65708 1.49065 1.37832 1.45831 1.07177 1.74175 1.09833 1.21615 0.81291 1.01344 0.95726 1.22564 0.96249 0.84177 0.90656 1.86489 1.27683 1.34156 1.87693 1.22709 0.92464 1.02564 0.97033 1.21702 0.90755 0.92482 0.94480 1.44710 1.16126 1.37717 1.36849 1.19424 0.97323 1.10692 1.10080 0.90383 1.25543 0.96047 1.02253 1.01315 1.70090 1.05003 1.46071 1.37833 0.85130 0.77552 0.77950 0.79097 1.21481 1.21942 1.19859 1.21518 0.90803 0.93141 0.89201 0.92760 0.92071 0.92611 0.91768 0.93414 0.91980 0.90188 0.90017 0.91961 0.74653 0.75891 0.75153 0.75553 0.91357 0.92502 0.76848 0.89501 0.88448 0.93430 0.95952 0.94172 0.95558 0.96135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.13 -1.96 5.93 30.60 0.18 -1.78 16 3 C -0.10 -1.59 5.10 30.59 0.16 -1.44 16 4 C -0.13 -2.60 4.54 30.59 0.14 -2.46 16 5 C 0.16 3.43 3.01 44.25 0.13 3.56 16 6 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 7 N -0.72 -14.15 4.66 -461.42 -2.15 -16.29 16 8 C 0.70 17.80 7.59 179.06 1.36 19.16 16 9 N -0.85 -13.44 8.88 -184.75 -1.64 -15.08 16 10 O -0.62 -22.31 13.03 18.47 0.24 -22.07 16 11 C 0.49 15.47 6.82 87.66 0.60 16.07 16 12 O -0.56 -22.56 13.68 19.42 0.27 -22.29 16 13 N -0.72 -21.20 5.18 -463.07 -2.40 -23.60 16 14 C 0.13 4.21 4.74 86.38 0.41 4.62 16 15 C 0.11 3.76 0.91 -9.61 -0.01 3.75 16 16 O -0.55 -18.44 13.10 -148.98 -1.95 -20.39 16 17 C -0.11 -3.78 6.26 31.99 0.20 -3.58 16 18 C 0.13 5.42 7.23 86.85 0.63 6.05 16 19 N -0.63 -31.66 3.39 -691.99 -2.35 -34.01 16 20 C -0.25 -13.58 10.26 84.04 0.86 -12.72 16 21 H 0.08 4.18 7.84 -2.91 -0.02 4.15 16 22 C -0.06 -3.17 5.48 84.86 0.47 -2.70 16 23 N -0.94 -52.64 10.36 21.65 0.22 -52.42 16 24 Si 0.97 44.34 29.56 68.60 2.03 46.37 16 25 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 C 0.18 8.15 4.16 86.73 0.36 8.51 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.95 7.75 -2.39 -0.02 0.93 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.06 1.76 6.04 -2.39 -0.01 1.74 16 38 H 0.42 5.00 8.84 -92.71 -0.82 4.18 16 39 H 0.41 3.33 8.84 -92.71 -0.82 2.51 16 40 H 0.42 6.10 8.93 -92.71 -0.83 5.27 16 41 H 0.41 10.52 7.40 -92.71 -0.69 9.83 16 42 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 44 H 0.38 10.18 8.14 -74.05 -0.60 9.57 16 45 H 0.09 2.87 8.04 -2.39 -0.02 2.85 16 46 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.25 13.46 8.31 -92.71 -0.77 12.68 16 50 H 0.03 1.31 7.28 -2.38 -0.02 1.29 16 51 H 0.02 1.06 7.23 -2.39 -0.02 1.04 16 Total: -1.00 -81.15 405.57 -4.30 -85.45 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: -2.77 Total: 38.49 kcal Atomic # 6 Polarization: 29.65 SS G_CDS: 6.20 Total: 35.85 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -8.31 Total: -141.40 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: -1.44 Total: -64.75 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -81.15 -4.30 -85.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325168453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.722 kcal (2) G-P(sol) polarization free energy of solvation -81.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds