Wall clock time and date at job start Wed Apr 1 2020 01:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47209 * 2 1 4 4 C 1.52997 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47135 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47816 * 305.00243 * 5 4 3 7 7 N 1.46505 * 109.46844 * 65.00021 * 5 4 3 8 8 C 1.34772 * 119.99856 * 60.00235 * 7 5 4 9 9 N 1.34783 * 120.00032 * 179.97438 * 8 7 5 10 10 O 1.21591 * 120.00511 * 359.97438 * 8 7 5 11 11 C 1.50699 * 109.47148 * 184.99756 * 5 4 3 12 12 O 1.21279 * 120.00141 * 260.00069 * 11 5 4 13 13 N 1.34777 * 119.99840 * 80.00726 * 11 5 4 14 14 C 1.46497 * 120.00088 * 179.97438 * 13 11 5 15 15 C 1.53006 * 109.47397 * 179.97438 * 14 13 11 16 16 O 1.42894 * 110.63713 * 61.85514 * 15 14 13 17 17 C 1.55156 * 110.72209 * 184.99870 * 15 14 13 18 18 C 1.54910 * 101.58060 * 153.86527 * 17 15 14 19 19 N 1.47430 * 104.83316 * 322.99065 * 18 17 15 20 20 C 1.36933 * 125.65045 * 204.09227 * 19 18 17 21 21 H 1.08001 * 120.00338 * 168.09700 * 20 19 18 22 22 C 1.38816 * 119.99913 * 348.10149 * 20 19 18 23 23 N 1.31626 * 119.99833 * 325.97513 * 22 20 19 24 24 Si 1.86792 * 120.00087 * 145.97854 * 22 20 19 25 25 H 1.48498 * 109.47124 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47530 * 119.99813 * 24 22 20 27 27 H 1.48510 * 109.47222 * 239.99984 * 24 22 20 28 28 C 1.47023 * 108.70307 * 24.35552 * 19 18 17 29 29 H 1.08996 * 109.46890 * 60.00452 * 1 2 3 30 30 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47129 * 300.00505 * 1 2 3 32 32 H 1.09002 * 109.47129 * 239.99495 * 2 1 3 33 33 H 1.09006 * 109.46891 * 119.99430 * 2 1 3 34 34 H 1.08994 * 109.47168 * 59.99837 * 3 2 1 35 35 H 1.09006 * 109.46729 * 299.99529 * 3 2 1 36 36 H 1.09002 * 109.47090 * 59.99575 * 4 3 2 37 37 H 1.08998 * 109.47064 * 300.00116 * 4 3 2 38 38 H 0.97001 * 119.99736 * 239.99844 * 7 5 4 39 39 H 0.97004 * 119.99692 * 0.02562 * 9 8 7 40 40 H 0.97001 * 119.99970 * 179.97438 * 9 8 7 41 41 H 0.97000 * 120.00109 * 359.97438 * 13 11 5 42 42 H 1.09005 * 109.47446 * 59.99906 * 14 13 11 43 43 H 1.09003 * 109.47349 * 299.99429 * 14 13 11 44 44 H 0.96696 * 114.00525 * 303.14216 * 16 15 14 45 45 H 1.09004 * 111.00136 * 35.79205 * 17 15 14 46 46 H 1.08996 * 111.00632 * 271.93968 * 17 15 14 47 47 H 1.09004 * 110.36734 * 204.15563 * 18 17 15 48 48 H 1.08994 * 110.36732 * 81.82842 * 18 17 15 49 49 H 0.96997 * 119.99739 * 354.25145 * 23 22 20 50 50 H 1.08995 * 109.88212 * 118.12593 * 28 19 18 51 51 H 1.08998 * 109.88314 * 239.29581 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6459 3.4236 -0.8422 7 7 3.6919 3.5406 1.2513 8 6 4.1160 3.0459 2.4310 9 7 3.7594 3.6494 3.5822 10 8 4.8203 2.0550 2.4570 11 6 5.5820 2.8866 -0.1231 12 8 6.2711 3.0402 0.8630 13 7 6.1594 2.7176 -1.3292 14 6 7.6195 2.7198 -1.4490 15 6 8.0114 2.5099 -2.9130 16 8 7.5149 3.5756 -3.7252 17 6 9.5511 2.3819 -3.0563 18 6 9.6740 1.5371 -4.3489 19 7 8.5535 0.5813 -4.2831 20 6 8.5004 -0.6311 -4.9174 21 1 7.7297 -1.3423 -4.6595 22 6 9.4374 -0.9462 -5.8920 23 7 9.9117 -0.0031 -6.6783 24 14 10.0251 -2.7084 -6.0877 25 1 9.3444 -3.5710 -5.0888 26 1 9.7053 -3.1879 -7.4563 27 1 11.4935 -2.7673 -5.8731 28 6 7.4998 1.1481 -3.4287 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9563 -0.8901 36 1 3.9338 0.9284 -0.8891 37 1 3.9330 0.9288 0.8908 38 1 3.1298 4.3309 1.2307 39 1 3.1972 4.4396 3.5616 40 1 4.0643 3.2930 4.4313 41 1 5.6083 2.5945 -2.1178 42 1 8.0351 1.9147 -0.8430 43 1 8.0112 3.6758 -1.1013 44 1 6.5572 3.6976 -3.6717 45 1 9.9804 1.8559 -2.2035 46 1 10.0143 3.3603 -3.1834 47 1 10.6255 1.0056 -4.3657 48 1 9.5784 2.1736 -5.2285 49 1 9.5468 0.8945 -6.6336 50 1 6.5877 1.2882 -4.0087 51 1 7.3078 0.4833 -2.5866 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325168457.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:06 Heat of formation + Delta-G solvation = -136.011977 kcal Electronic energy + Delta-G solvation = -31436.390902 eV Core-core repulsion = 27176.678899 eV Total energy + Delta-G solvation = -4259.712002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70709 -40.65510 -39.54639 -37.21355 -37.00628 -35.32181 -35.17376 -34.40557 -34.16562 -31.62387 -31.19704 -30.03706 -28.00190 -26.92902 -25.26943 -23.77096 -22.83899 -22.27665 -21.72199 -21.47034 -20.94762 -19.63823 -19.49795 -18.85340 -18.02498 -17.50165 -16.94771 -16.55629 -16.44224 -16.36204 -15.83619 -15.74125 -15.55412 -15.36005 -15.20631 -15.07501 -14.92552 -14.74965 -14.51760 -14.18428 -14.04672 -13.58378 -13.43641 -13.38127 -12.79311 -12.73384 -12.55730 -12.52470 -12.27672 -12.20851 -12.04735 -11.91713 -11.88964 -11.77856 -11.68201 -11.46942 -11.26374 -11.07994 -10.83666 -10.46868 -10.46516 -10.15648 -9.87601 -9.06707 -8.41180 -5.29886 1.56907 1.60684 1.64063 1.81738 1.82312 2.21604 2.49039 2.61146 3.02551 3.15111 3.30312 3.53688 3.66099 3.70028 3.75470 3.80066 3.89999 4.01057 4.15684 4.24551 4.35111 4.36792 4.41838 4.53810 4.59439 4.68754 4.79220 4.82468 4.83478 4.86913 4.92710 4.99847 5.02813 5.06469 5.22831 5.23370 5.31721 5.33182 5.38556 5.49848 5.52802 5.64518 5.98262 6.11921 6.27189 6.48131 6.71863 6.84914 7.21611 7.26254 7.67917 7.86464 8.26342 8.93391 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.002743 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.531871 B =10204.614558 C =11588.983887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.101 4.101 4 C -0.132 4.132 5 C 0.161 3.839 6 H 0.159 0.841 7 N -0.718 5.718 8 C 0.700 3.300 9 N -0.855 5.855 10 O -0.620 6.620 11 C 0.494 3.506 12 O -0.553 6.553 13 N -0.719 5.719 14 C 0.123 3.877 15 C 0.130 3.870 16 O -0.552 6.552 17 C -0.112 4.112 18 C 0.152 3.848 19 N -0.622 5.622 20 C -0.354 4.354 21 H 0.061 0.939 22 C -0.074 4.074 23 N -0.935 5.935 24 Si 1.113 2.887 25 H -0.274 1.274 26 H -0.289 1.289 27 H -0.288 1.288 28 C 0.115 3.885 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.419 0.581 39 H 0.412 0.588 40 H 0.415 0.585 41 H 0.410 0.590 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.387 0.613 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.022 0.978 48 H 0.004 0.996 49 H 0.255 0.745 50 H 0.032 0.968 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.562 11.980 17.064 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.138 4.138 4 C -0.171 4.171 5 C 0.051 3.949 6 H 0.176 0.824 7 N -0.376 5.376 8 C 0.398 3.602 9 N -0.424 5.424 10 O -0.499 6.499 11 C 0.279 3.721 12 O -0.429 6.429 13 N -0.374 5.374 14 C -0.002 4.002 15 C 0.088 3.912 16 O -0.359 6.359 17 C -0.151 4.151 18 C 0.027 3.973 19 N -0.349 5.349 20 C -0.482 4.482 21 H 0.079 0.921 22 C -0.271 4.271 23 N -0.577 5.577 24 Si 0.937 3.063 25 H -0.199 1.199 26 H -0.216 1.216 27 H -0.214 1.214 28 C -0.010 4.010 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.257 0.743 39 H 0.242 0.758 40 H 0.247 0.753 41 H 0.247 0.753 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.237 0.763 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.041 0.959 48 H 0.022 0.978 49 H 0.065 0.935 50 H 0.050 0.950 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.848 10.258 16.649 27.160 hybrid contribution -1.771 1.147 0.699 2.222 sum -20.619 11.405 17.349 29.260 Atomic orbital electron populations 1.21736 0.94736 1.01778 1.02278 1.21544 0.96741 0.97241 1.01257 1.21477 0.92396 0.96790 1.03150 1.21947 0.97758 0.94274 1.03144 1.20822 0.88950 0.96678 0.88479 0.82409 1.44499 1.56262 1.33771 1.03069 1.16210 0.79268 0.82797 0.81925 1.42795 1.58317 1.34566 1.06762 1.90961 1.42636 1.29521 1.86739 1.21676 0.92406 0.75677 0.82322 1.90752 1.65793 1.48676 1.37719 1.45830 1.06827 1.74601 1.10150 1.21636 0.81556 1.02372 0.94612 1.22131 0.95094 0.85835 0.88144 1.86592 1.28242 1.52467 1.68615 1.22756 0.93227 1.00919 0.98155 1.21355 0.90751 0.90356 0.94863 1.44782 1.15291 1.18583 1.56219 1.19952 1.17768 0.91316 1.19134 0.92092 1.27030 0.98848 1.08734 0.92472 1.70846 1.48086 1.04356 1.34394 0.82922 0.76198 0.71196 0.75948 1.19927 1.21578 1.21435 1.22094 0.91888 0.93409 0.93641 0.91720 0.93010 0.92503 0.92313 0.93869 0.91678 0.89445 0.90690 0.92562 0.74296 0.75780 0.75272 0.75291 0.92227 0.90351 0.76337 0.89063 0.88595 0.95944 0.97784 0.93509 0.94970 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.96 5.93 30.60 0.18 -1.78 16 3 C -0.10 -1.25 5.10 30.59 0.16 -1.09 16 4 C -0.13 -2.39 4.54 30.59 0.14 -2.25 16 5 C 0.16 2.48 3.01 44.24 0.13 2.61 16 6 H 0.16 0.88 8.14 -2.39 -0.02 0.87 16 7 N -0.72 -9.91 4.66 -461.41 -2.15 -12.06 16 8 C 0.70 15.14 7.59 179.05 1.36 16.50 16 9 N -0.85 -10.56 8.88 -184.74 -1.64 -12.20 16 10 O -0.62 -21.04 13.03 18.45 0.24 -20.79 16 11 C 0.49 12.30 6.82 87.66 0.60 12.90 16 12 O -0.55 -19.58 13.68 19.43 0.27 -19.31 16 13 N -0.72 -15.91 5.13 -463.05 -2.37 -18.28 16 14 C 0.12 3.45 4.74 86.38 0.41 3.86 16 15 C 0.13 4.16 0.93 -9.60 -0.01 4.15 16 16 O -0.55 -16.38 13.10 -148.98 -1.95 -18.33 16 17 C -0.11 -4.08 6.26 31.99 0.20 -3.88 16 18 C 0.15 7.43 5.33 86.85 0.46 7.89 16 19 N -0.62 -32.18 3.33 -691.94 -2.30 -34.48 16 20 C -0.35 -20.48 9.97 84.04 0.84 -19.64 16 21 H 0.06 3.51 8.02 -2.91 -0.02 3.49 16 22 C -0.07 -4.34 4.95 84.86 0.42 -3.92 16 23 N -0.94 -58.60 12.87 21.65 0.28 -58.32 16 24 Si 1.11 52.41 30.03 68.60 2.06 54.47 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 28 C 0.12 4.58 6.04 86.73 0.52 5.10 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 0.77 7.75 -2.39 -0.02 0.76 16 35 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.53 6.04 -2.39 -0.01 1.52 16 38 H 0.42 2.14 8.84 -92.71 -0.82 1.32 16 39 H 0.41 1.70 8.84 -92.71 -0.82 0.88 16 40 H 0.42 5.05 8.93 -92.71 -0.83 4.23 16 41 H 0.41 6.68 7.37 -92.71 -0.68 6.00 16 42 H 0.06 1.93 8.13 -2.38 -0.02 1.91 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.39 7.69 8.05 -74.06 -0.60 7.09 16 45 H 0.09 3.13 8.04 -2.38 -0.02 3.11 16 46 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 47 H 0.02 1.20 7.82 -2.38 -0.02 1.18 16 48 H 0.00 0.23 7.03 -2.39 -0.02 0.22 16 49 H 0.25 16.34 6.45 -92.71 -0.60 15.74 16 50 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 51 H 0.03 1.34 7.82 -2.39 -0.02 1.32 16 Total: -1.00 -90.75 405.77 -4.03 -94.78 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -2.59 Total: 25.10 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.13 Total: 19.43 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -8.18 Total: -135.34 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -1.45 Total: -58.44 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 2.06 Total: 54.47 kcal Total: -90.75 -4.03 -94.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325168457.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.233 kcal (2) G-P(sol) polarization free energy of solvation -90.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds