Wall clock time and date at job start Wed Apr 1 2020 02:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47245 * 2 1 4 4 N 1.46903 * 109.47302 * 120.00102 * 2 1 3 5 5 C 1.46902 * 110.99672 * 306.04602 * 4 2 1 6 6 C 1.46896 * 110.99829 * 69.99772 * 4 2 1 7 7 C 1.50703 * 109.47254 * 170.00329 * 6 4 2 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 O 1.42894 * 112.94182 * 53.42971 * 11 10 9 13 13 C 1.53939 * 113.73376 * 281.72718 * 11 10 9 14 14 N 1.47965 * 86.18318 * 221.92110 * 13 11 10 15 15 C 1.46896 * 111.00100 * 137.57689 * 14 13 11 16 16 C 1.50699 * 109.46970 * 70.64608 * 15 14 13 17 17 O 1.21294 * 120.00179 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00421 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00345 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99689 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00485 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47061 * 90.00319 * 23 21 19 25 25 H 1.48503 * 109.47215 * 209.99985 * 23 21 19 26 26 H 1.48496 * 109.47476 * 330.00198 * 23 21 19 27 27 C 1.47972 * 90.75954 * 24.68659 * 14 13 11 28 28 H 1.08992 * 109.47487 * 300.00276 * 1 2 3 29 29 H 1.09004 * 109.47213 * 60.00017 * 1 2 3 30 30 H 1.08999 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47252 * 240.00291 * 2 1 3 32 32 H 1.08996 * 109.46981 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46768 * 300.00010 * 3 2 1 34 34 H 1.08999 * 109.46485 * 59.99646 * 3 2 1 35 35 H 1.08995 * 109.47123 * 183.94876 * 5 4 2 36 36 H 1.08995 * 109.47210 * 303.95328 * 5 4 2 37 37 H 1.09004 * 109.46831 * 63.95591 * 5 4 2 38 38 H 1.08998 * 109.47322 * 50.00331 * 6 4 2 39 39 H 1.09002 * 109.47668 * 290.00528 * 6 4 2 40 40 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 41 41 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 42 42 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 43 43 H 0.96702 * 114.00177 * 309.66781 * 12 11 10 44 44 H 1.09004 * 113.75478 * 336.23643 * 13 11 10 45 45 H 1.08996 * 113.76197 * 107.59918 * 13 11 10 46 46 H 1.09004 * 109.46697 * 190.64022 * 15 14 13 47 47 H 1.08997 * 109.47494 * 310.64441 * 15 14 13 48 48 H 0.97010 * 119.99656 * 359.97438 * 18 16 15 49 49 H 0.97004 * 120.00654 * 180.02562 * 22 21 19 50 50 H 1.09001 * 113.75645 * 220.99382 * 27 14 13 51 51 H 1.09000 * 113.75871 * 89.63163 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4343 -0.1149 2.4167 6 6 1.7529 -2.1349 1.1203 7 6 2.4773 -2.8418 2.2368 8 8 3.1501 -2.2065 3.0209 9 7 2.3785 -4.1800 2.3633 10 6 3.0779 -4.8663 3.4523 11 6 2.7961 -6.3680 3.3729 12 8 3.0906 -6.9228 2.0894 13 6 1.4149 -6.7691 3.9216 14 7 2.1072 -7.9164 4.5492 15 6 1.6286 -8.1338 5.9209 16 6 0.2206 -8.6696 5.8826 17 8 -0.3303 -8.8519 4.8174 18 7 -0.4268 -8.9462 7.0319 19 6 -1.7079 -9.4332 6.9971 20 1 -2.1986 -9.5947 6.0487 21 6 -2.3749 -9.7188 8.1820 22 7 -1.7781 -9.5218 9.3361 23 14 -4.1207 -10.3816 8.1346 24 1 -4.0857 -11.8654 8.0868 25 1 -4.8501 -9.9426 9.3514 26 1 -4.8143 -9.8638 6.9280 27 6 3.3860 -7.1720 4.5456 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.8663 -0.5988 3.2925 36 1 1.6466 0.9537 2.4501 37 1 0.3555 -0.2710 2.4104 38 1 2.1024 -2.5170 0.1612 39 1 0.6813 -2.3119 1.2131 40 1 1.8407 -4.6880 1.7359 41 1 4.1502 -4.6926 3.3619 42 1 2.7268 -4.4810 4.4095 43 1 2.6975 -6.4372 1.3513 44 1 1.0040 -6.0584 4.6388 45 1 0.7016 -7.0558 3.1489 46 1 2.2771 -8.8522 6.4224 47 1 1.6433 -7.1894 6.4649 48 1 0.0139 -8.8008 7.8838 49 1 -2.2436 -9.7216 10.1633 50 1 4.2476 -7.7807 4.2713 51 1 3.5516 -6.5792 5.4451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325319293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:18 Heat of formation + Delta-G solvation = -64.836484 kcal Electronic energy + Delta-G solvation = -30184.156598 eV Core-core repulsion = 25927.530996 eV Total energy + Delta-G solvation = -4256.625601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.80163 -39.98456 -38.28722 -37.85968 -35.84027 -34.47087 -33.90468 -32.37417 -31.31707 -30.44276 -28.86532 -27.65709 -27.11137 -26.18295 -25.33247 -24.60016 -22.49506 -20.91409 -20.09280 -19.97431 -19.22665 -18.04002 -17.78410 -17.05963 -16.48392 -16.13401 -15.98220 -15.79968 -15.38883 -15.29614 -15.01738 -14.74816 -14.45383 -14.32842 -13.91135 -13.76528 -13.59299 -13.51498 -13.36530 -13.12656 -13.03074 -12.49104 -12.34539 -12.26608 -12.08364 -11.90550 -11.88746 -11.74371 -11.54549 -11.51496 -11.31073 -11.14488 -11.04466 -10.77443 -10.41815 -10.24709 -10.02113 -9.96519 -9.52789 -9.39834 -8.68992 -8.63864 -8.25900 -7.98956 -6.44084 -3.85037 2.38195 2.64945 3.15755 3.24477 3.29884 3.60462 3.66232 3.86750 3.97530 4.18870 4.21493 4.40579 4.44276 4.53174 4.64626 4.74726 4.84096 4.86214 4.91667 5.08684 5.10804 5.21531 5.22101 5.24635 5.27261 5.33345 5.42514 5.47215 5.48380 5.51860 5.62085 5.67307 5.69409 5.76479 5.81954 5.82147 5.91942 6.07139 6.11760 6.22443 6.54699 6.56349 6.69795 7.09718 7.15473 7.41619 7.52622 7.96178 8.02953 8.58641 9.15314 9.51358 10.02957 10.73605 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.002027 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.738284 B =13812.631583 C =15117.340573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 C -0.143 4.143 4 N -0.517 5.517 5 C 0.012 3.988 6 C 0.033 3.967 7 C 0.516 3.484 8 O -0.519 6.519 9 N -0.732 5.732 10 C 0.103 3.897 11 C 0.088 3.912 12 O -0.521 6.521 13 C 0.000 4.000 14 N -0.440 5.440 15 C 0.007 3.993 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.017 3.983 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.026 0.974 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.371 0.629 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.054 0.946 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.100 0.900 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.944 18.438 -15.783 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.034 4.034 3 C -0.201 4.201 4 N -0.241 5.241 5 C -0.136 4.136 6 C -0.098 4.098 7 C 0.301 3.699 8 O -0.394 6.394 9 N -0.386 5.386 10 C -0.021 4.021 11 C 0.045 3.955 12 O -0.326 6.326 13 C -0.129 4.129 14 N -0.163 5.163 15 C -0.125 4.125 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.112 4.112 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.218 0.782 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.072 0.928 48 H 0.225 0.775 49 H 0.082 0.918 50 H 0.119 0.881 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.789 17.720 -15.604 25.560 hybrid contribution -2.146 0.409 0.557 2.255 sum 7.643 18.129 -15.047 24.769 Atomic orbital electron populations 1.22519 0.97412 1.02148 1.02795 1.21779 0.92777 0.95916 0.92890 1.21828 1.02046 0.94485 1.01703 1.61925 1.58824 1.00584 1.02763 1.22642 0.96727 1.00900 0.93331 1.21997 0.99156 0.90121 0.98528 1.20520 0.81518 0.81708 0.86111 1.90691 1.39732 1.65276 1.43671 1.45894 1.52564 1.07616 1.32572 1.22003 0.98150 0.90905 0.91055 1.23050 0.96755 0.89754 0.85898 1.86638 1.76302 1.55742 1.13872 1.24517 0.96016 0.92429 0.99979 1.68475 1.01389 1.31329 1.15075 1.22512 0.97517 1.01029 0.91425 1.19654 0.87271 0.85132 0.85081 1.90520 1.68438 1.57708 1.29660 1.41871 1.14356 1.57071 1.06756 1.19689 0.89459 1.39185 0.94538 0.87951 1.25267 1.00312 0.97742 0.94652 1.69608 1.38426 1.48693 0.97527 0.85854 0.81622 0.79034 0.77749 1.20358 1.20924 1.19464 1.24126 0.96601 0.95469 0.94994 0.91951 0.91840 0.92583 0.89919 0.91701 0.92191 0.92450 0.89487 0.91130 0.95564 0.87787 0.91540 0.76771 0.90274 0.90215 0.78171 0.90886 0.88305 0.88900 0.92754 0.77481 0.91847 0.88122 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 8.44 37.15 0.31 -0.77 16 2 C 0.07 0.48 2.92 -67.71 -0.20 0.28 16 3 C -0.14 -0.86 9.12 37.16 0.34 -0.52 16 4 N -0.52 -4.41 4.45 -236.33 -1.05 -5.46 16 5 C 0.01 0.10 8.33 60.07 0.50 0.60 16 6 C 0.03 0.24 5.02 -4.98 -0.02 0.22 16 7 C 0.52 5.13 7.55 -10.98 -0.08 5.05 16 8 O -0.52 -7.20 14.31 5.55 0.08 -7.12 16 9 N -0.73 -6.01 5.34 -60.30 -0.32 -6.33 16 10 C 0.10 1.01 5.28 -4.04 -0.02 0.99 16 11 C 0.09 0.99 1.52 -89.69 -0.14 0.85 16 12 O -0.52 -5.94 13.50 -35.23 -0.48 -6.42 16 13 C 0.00 0.00 6.16 -2.76 -0.02 -0.02 16 14 N -0.44 -7.32 5.95 -239.59 -1.43 -8.74 16 15 C 0.01 0.13 5.31 -4.98 -0.03 0.10 16 16 C 0.44 10.47 7.59 -10.99 -0.08 10.39 16 17 O -0.58 -15.66 15.13 5.54 0.08 -15.57 16 18 N -0.56 -14.28 5.29 -10.97 -0.06 -14.34 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 23 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 27 C 0.02 0.22 7.38 -2.76 -0.02 0.20 16 28 H 0.06 0.39 6.42 -51.93 -0.33 0.06 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 6.91 -51.93 -0.36 -0.04 16 31 H 0.08 0.47 7.93 -51.93 -0.41 0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.36 6.47 -51.93 -0.34 0.02 16 35 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 36 H 0.07 0.58 6.30 -51.93 -0.33 0.25 16 37 H 0.03 0.21 6.46 -51.93 -0.34 -0.12 16 38 H 0.10 0.55 7.93 -51.93 -0.41 0.13 16 39 H 0.07 0.41 7.06 -51.93 -0.37 0.05 16 40 H 0.40 2.27 7.31 -40.82 -0.30 1.97 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 43 H 0.37 2.67 7.61 45.56 0.35 3.02 16 44 H 0.07 1.06 7.67 -51.93 -0.40 0.66 16 45 H 0.10 1.60 8.09 -51.93 -0.42 1.18 16 46 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.05 0.84 7.69 -51.93 -0.40 0.45 16 48 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 49 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.08 0.86 7.75 -51.93 -0.40 0.45 16 LS Contribution 405.41 15.07 6.11 6.11 Total: -1.00 -35.30 405.41 -8.60 -43.90 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -7.55 Total: 12.36 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 0.30 Total: 9.38 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -2.13 Total: -58.63 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.31 Total: -29.12 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.30 -8.60 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325319293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.937 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds