Wall clock time and date at job start Wed Apr 1 2020 02:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 H 1.09007 * 109.46804 * 305.19475 * 3 2 1 5 5 C 1.52998 * 109.47117 * 65.19774 * 3 2 1 6 6 C 1.50703 * 109.46945 * 186.83131 * 5 3 2 7 7 O 1.21286 * 120.00021 * 358.78130 * 6 5 3 8 8 N 1.34777 * 120.00246 * 178.77984 * 6 5 3 9 9 C 1.46664 * 125.34047 * 180.02562 * 8 6 5 10 10 C 1.53726 * 107.94140 * 180.54616 * 9 8 6 11 11 H 1.09002 * 112.56009 * 139.71924 * 10 9 8 12 12 C 1.53688 * 109.34189 * 266.25211 * 10 9 8 13 13 N 1.47174 * 107.73500 * 128.69592 * 12 10 9 14 14 C 1.36935 * 125.25604 * 180.39914 * 13 12 10 15 15 H 1.07996 * 119.99808 * 184.40771 * 14 13 12 16 16 C 1.38813 * 120.00031 * 4.41351 * 14 13 12 17 17 N 1.31621 * 119.99785 * 352.62474 * 16 14 13 18 18 Si 1.86804 * 120.00158 * 172.63270 * 16 14 13 19 19 H 1.48500 * 109.47195 * 94.98206 * 18 16 14 20 20 H 1.48504 * 109.46784 * 214.98309 * 18 16 14 21 21 H 1.48493 * 109.46784 * 334.98058 * 18 16 14 22 22 C 1.46743 * 109.41197 * 359.65450 * 13 12 10 23 23 C 1.53934 * 106.71761 * 342.40410 * 22 13 12 24 24 H 1.09007 * 113.00984 * 150.83627 * 23 22 13 25 25 C 1.46778 * 125.33504 * 359.69670 * 8 6 5 26 26 C 1.50698 * 109.46952 * 185.20083 * 3 2 1 27 27 C 1.38236 * 120.00026 * 299.72273 * 26 3 2 28 28 C 1.38237 * 120.00234 * 179.81532 * 27 26 3 29 29 C 1.38232 * 119.99542 * 0.39070 * 28 27 26 30 30 C 1.38232 * 120.00348 * 359.86371 * 29 28 27 31 31 C 1.38232 * 120.00254 * 359.95133 * 30 29 28 32 32 H 1.09003 * 109.47075 * 62.40919 * 1 2 3 33 33 H 1.08999 * 109.47044 * 182.40949 * 1 2 3 34 34 H 1.09001 * 109.47096 * 302.41022 * 1 2 3 35 35 H 1.08996 * 109.47326 * 239.99747 * 2 1 3 36 36 H 1.08997 * 109.47144 * 119.99869 * 2 1 3 37 37 H 1.08998 * 109.47255 * 66.83675 * 5 3 2 38 38 H 1.08997 * 109.47119 * 306.82937 * 5 3 2 39 39 H 1.09002 * 109.76892 * 300.16623 * 9 8 6 40 40 H 1.08999 * 109.77174 * 60.93015 * 9 8 6 41 41 H 1.09001 * 109.76388 * 247.19645 * 12 10 9 42 42 H 1.09000 * 109.76077 * 7.91582 * 12 10 9 43 43 H 0.97002 * 119.99976 * 179.97438 * 17 16 14 44 44 H 1.09000 * 110.00943 * 223.09204 * 22 13 12 45 45 H 1.08994 * 110.01210 * 101.71990 * 22 13 12 46 46 H 1.09002 * 110.02836 * 280.77289 * 25 8 6 47 47 H 1.09006 * 110.02416 * 42.18865 * 25 8 6 48 48 H 1.08003 * 119.99853 * 0.02562 * 27 26 3 49 49 H 1.07992 * 119.99951 * 180.23419 * 28 27 26 50 50 H 1.08000 * 119.99719 * 179.83402 * 29 28 27 51 51 H 1.07998 * 120.00150 * 179.97438 * 30 29 28 52 52 H 1.08000 * 120.00568 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6027 1.9825 -0.8399 5 6 1.6395 2.1250 1.3094 6 6 1.9927 3.5885 1.2415 7 8 2.5336 4.0366 0.2527 8 7 1.7076 4.3995 2.2796 9 6 1.9975 5.8360 2.3385 10 6 1.5193 6.3601 3.7022 11 1 2.2111 7.0799 4.1396 12 6 0.0894 6.9065 3.5646 13 7 -0.7315 6.2839 4.6154 14 6 -2.0669 6.5123 4.8145 15 1 -2.5718 6.0635 5.6571 16 6 -2.7717 7.3207 3.9332 17 7 -2.1321 7.9834 2.9930 18 14 -4.6280 7.4683 4.0819 19 1 -4.9660 8.6648 4.8940 20 1 -5.2237 7.6043 2.7284 21 1 -5.1698 6.2532 4.7414 22 6 0.0995 5.3674 5.4047 23 6 1.3586 5.0791 4.5674 24 1 2.2348 4.8591 5.1775 25 6 1.0519 3.9848 3.5256 26 6 3.5415 1.4444 -0.1288 27 6 4.3182 0.8206 0.8296 28 6 5.6954 0.8191 0.7095 29 6 6.2961 1.4483 -0.3648 30 6 5.5196 2.0766 -1.3204 31 6 4.1424 2.0749 -1.2023 32 1 -0.3633 0.4760 -0.9108 33 1 -0.3633 -1.0267 0.0432 34 1 -0.3633 0.5508 0.8676 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 2.1727 1.6608 2.1390 38 1 0.5657 2.0171 1.4617 39 1 3.0702 6.0000 2.2359 40 1 1.4671 6.3523 1.5384 41 1 0.0920 7.9867 3.7108 42 1 -0.3020 6.6695 2.5753 43 1 -2.6246 8.5480 2.3769 44 1 -0.4430 4.4411 5.5936 45 1 0.3783 5.8359 6.3485 46 1 -0.0240 3.9026 3.3719 47 1 1.4558 3.0291 3.8598 48 1 3.8490 0.3315 1.6704 49 1 6.3019 0.3285 1.4562 50 1 7.3721 1.4494 -0.4572 51 1 5.9890 2.5686 -2.1594 52 1 3.5357 2.5662 -1.9487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325773372.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:03 Heat of formation + Delta-G solvation = -8.403370 kcal Electronic energy + Delta-G solvation = -30717.510733 eV Core-core repulsion = 26874.181518 eV Total energy + Delta-G solvation = -3843.329215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60720 -40.52007 -39.32282 -36.84124 -36.42841 -34.09758 -32.22480 -31.90275 -31.67778 -31.06387 -30.09176 -27.41877 -27.01072 -26.09653 -24.29524 -23.62591 -22.82041 -21.84739 -21.16179 -20.70023 -20.02399 -18.84922 -18.06656 -17.85688 -17.32649 -16.82651 -16.48673 -16.19236 -15.83048 -15.55841 -15.44273 -15.04989 -14.88602 -14.67179 -14.44775 -14.27367 -14.13403 -13.93404 -13.62889 -13.46312 -13.33369 -13.21592 -13.11585 -13.00978 -12.76408 -12.73012 -12.63822 -12.49957 -12.03492 -11.98564 -11.90049 -11.84366 -11.77328 -11.53202 -11.50825 -11.35783 -11.30147 -10.83473 -10.64677 -9.71112 -9.60278 -9.44318 -8.85958 -7.85662 -5.18836 0.55589 0.61368 1.45501 1.46670 1.55921 1.69556 2.07953 2.49965 2.97079 3.31001 3.35579 3.56937 3.70470 3.72897 3.82184 3.89104 3.97787 4.17547 4.21350 4.28317 4.31820 4.33671 4.34512 4.43035 4.45899 4.53596 4.57960 4.61089 4.66889 4.70064 4.76225 4.83150 4.86188 4.93725 4.98416 5.05139 5.07761 5.12201 5.16972 5.23871 5.24650 5.33401 5.34983 5.42184 5.49309 5.51161 5.63503 5.66379 5.70401 5.77441 5.86979 6.21199 6.22803 6.61217 7.10901 7.21846 7.81163 8.43434 9.25029 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.002832 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.639581 B = 9884.836217 C =10561.660765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C -0.031 4.031 4 H 0.060 0.940 5 C -0.123 4.123 6 C 0.516 3.484 7 O -0.575 6.575 8 N -0.613 5.613 9 C 0.128 3.872 10 C -0.113 4.113 11 H 0.110 0.890 12 C 0.199 3.801 13 N -0.624 5.624 14 C -0.236 4.236 15 H 0.087 0.913 16 C -0.067 4.067 17 N -0.951 5.951 18 Si 0.972 3.028 19 H -0.289 1.289 20 H -0.300 1.300 21 H -0.264 1.264 22 C 0.140 3.860 23 C -0.093 4.093 24 H 0.133 0.867 25 C 0.115 3.885 26 C -0.073 4.073 27 C -0.126 4.126 28 C -0.127 4.127 29 C -0.136 4.136 30 C -0.137 4.137 31 C -0.115 4.115 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.001 0.999 42 H 0.008 0.992 43 H 0.243 0.757 44 H 0.051 0.949 45 H 0.030 0.970 46 H 0.051 0.949 47 H 0.110 0.890 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.137 0.863 51 H 0.125 0.875 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.434 -19.252 -1.384 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.050 4.050 4 H 0.078 0.922 5 C -0.162 4.162 6 C 0.307 3.693 7 O -0.455 6.455 8 N -0.346 5.346 9 C 0.004 3.996 10 C -0.133 4.133 11 H 0.128 0.872 12 C 0.074 3.926 13 N -0.350 5.350 14 C -0.365 4.365 15 H 0.105 0.895 16 C -0.260 4.260 17 N -0.600 5.600 18 Si 0.801 3.199 19 H -0.216 1.216 20 H -0.227 1.227 21 H -0.188 1.188 22 C 0.015 3.985 23 C -0.112 4.112 24 H 0.151 0.849 25 C -0.007 4.007 26 C -0.073 4.073 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.154 4.154 30 C -0.155 4.155 31 C -0.133 4.133 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.026 0.974 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.128 0.872 48 H 0.159 0.841 49 H 0.161 0.839 50 H 0.155 0.845 51 H 0.143 0.857 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.562 -18.975 -2.044 24.006 hybrid contribution -1.384 1.335 -0.607 2.017 sum 13.178 -17.639 -2.651 22.177 Atomic orbital electron populations 1.21885 0.95347 1.02486 1.01811 1.21519 0.95940 0.93485 1.03283 1.19965 0.91346 0.97163 0.96530 0.92178 1.21863 1.04429 0.89324 1.00567 1.21041 0.77743 0.89601 0.80914 1.90669 1.44589 1.77908 1.32311 1.48411 1.59550 1.08942 1.17744 1.21572 0.99629 0.81494 0.96890 1.22976 0.97602 0.98339 0.94390 0.87217 1.20821 0.86635 0.94154 0.90979 1.44645 1.06137 1.49049 1.35215 1.19444 0.84362 1.24665 1.08025 0.89501 1.25636 1.02255 0.99999 0.98130 1.70217 1.34777 1.33360 1.21672 0.85148 0.80411 0.78106 0.76234 1.21579 1.22688 1.18833 1.21380 0.90484 0.93159 0.93489 1.22989 0.99150 0.93137 0.95970 0.84911 1.22133 0.96987 0.99059 0.82518 1.19847 0.95340 0.97162 0.94914 1.21225 0.94047 1.00032 0.99073 1.21418 0.94980 0.99685 0.98435 1.21386 1.00612 0.98492 0.94895 1.21331 0.93805 1.00217 1.00153 1.21081 0.95162 0.98540 0.98505 0.93650 0.91196 0.92261 0.91580 0.89790 0.86219 0.87443 0.91194 0.94685 0.98084 0.97389 0.94743 0.93077 0.95219 0.93091 0.87207 0.84134 0.83900 0.84488 0.85651 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.74 71.98 0.70 -1.75 16 2 C -0.10 -1.64 5.14 30.60 0.16 -1.49 16 3 C -0.03 -0.67 1.68 -11.54 -0.02 -0.69 16 4 H 0.06 1.61 7.64 -2.38 -0.02 1.59 16 5 C -0.12 -2.66 3.99 29.85 0.12 -2.55 16 6 C 0.52 16.27 7.61 87.66 0.67 16.93 16 7 O -0.57 -22.18 14.57 -3.05 -0.04 -22.22 16 8 N -0.61 -19.48 3.31 -816.96 -2.71 -22.18 16 9 C 0.13 4.49 6.23 86.59 0.54 5.03 16 10 C -0.11 -3.97 4.01 -9.49 -0.04 -4.01 16 11 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 12 C 0.20 9.68 4.77 86.48 0.41 10.10 16 13 N -0.62 -30.46 3.39 -696.53 -2.36 -32.82 16 14 C -0.24 -12.80 10.24 84.03 0.86 -11.94 16 15 H 0.09 4.45 7.84 -2.91 -0.02 4.42 16 16 C -0.07 -3.81 5.47 84.86 0.46 -3.35 16 17 N -0.95 -57.87 10.30 21.65 0.22 -57.64 16 18 Si 0.97 45.59 29.56 68.60 2.03 47.62 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 22 C 0.14 4.99 6.41 86.65 0.56 5.55 16 23 C -0.09 -2.64 4.14 -9.25 -0.04 -2.68 16 24 H 0.13 2.74 8.14 -2.38 -0.02 2.72 16 25 C 0.12 3.15 5.87 86.72 0.51 3.66 16 26 C -0.07 -1.70 3.81 -19.86 -0.08 -1.77 16 27 C -0.13 -2.42 8.69 22.27 0.19 -2.22 16 28 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 29 C -0.14 -2.67 10.05 22.27 0.22 -2.45 16 30 C -0.14 -3.18 10.05 22.27 0.22 -2.95 16 31 C -0.11 -3.04 8.69 22.27 0.19 -2.84 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.93 6.33 -2.39 -0.02 0.91 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.02 7.59 -2.39 -0.02 1.00 16 37 H 0.12 1.93 6.94 -2.39 -0.02 1.91 16 38 H 0.11 2.17 6.23 -2.39 -0.01 2.16 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.03 1.47 7.44 -2.39 -0.02 1.45 16 41 H 0.00 0.05 7.51 -2.39 -0.02 0.03 16 42 H 0.01 0.45 6.50 -2.39 -0.02 0.44 16 43 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.05 1.70 7.97 -2.39 -0.02 1.69 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.05 1.69 7.76 -2.39 -0.02 1.67 16 47 H 0.11 2.03 7.65 -2.38 -0.02 2.02 16 48 H 0.14 1.93 7.13 -2.91 -0.02 1.91 16 49 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 50 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 51 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 52 H 0.10 2.91 7.95 -2.91 -0.02 2.89 16 Total: -1.00 -73.69 401.04 3.90 -69.79 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.89 Total: 18.97 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.87 Total: -1.51 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -4.84 Total: -112.65 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.22 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.69 3.90 -69.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325773372.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.383 kcal (2) G-P(sol) polarization free energy of solvation -73.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds