Wall clock time and date at job start Wed Apr 1 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46945 * 2 1 4 4 N 1.46898 * 109.47440 * 120.00573 * 2 1 3 5 5 C 1.46839 * 111.00046 * 175.00000 * 4 2 1 6 6 C 1.53037 * 109.52335 * 185.83589 * 5 4 2 7 7 C 1.53117 * 109.27955 * 300.82269 * 6 5 4 8 8 O 1.42898 * 109.51900 * 297.68019 * 7 6 5 9 9 C 1.53006 * 109.52168 * 177.55775 * 7 6 5 10 10 N 1.46498 * 109.46687 * 184.99667 * 9 7 6 11 11 C 1.34782 * 119.99965 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99720 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00084 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99731 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46894 * 179.97438 * 14 13 11 16 16 O 1.21292 * 120.00099 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99867 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99888 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00148 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99901 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99934 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47048 * 90.00435 * 22 20 18 24 24 H 1.48504 * 109.46916 * 210.00469 * 22 20 18 25 25 H 1.48500 * 109.47191 * 329.99984 * 22 20 18 26 26 C 1.53112 * 109.16138 * 57.65257 * 7 6 5 27 27 C 1.46852 * 110.99517 * 299.20801 * 4 2 1 28 28 H 1.09005 * 109.47502 * 59.99206 * 1 2 3 29 29 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47331 * 299.99805 * 1 2 3 31 31 H 1.09004 * 109.46648 * 240.00464 * 2 1 3 32 32 H 1.09007 * 109.47042 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47766 * 299.99930 * 3 2 1 34 34 H 1.08994 * 109.46975 * 60.00848 * 3 2 1 35 35 H 1.08997 * 109.46735 * 65.82375 * 5 4 2 36 36 H 1.08996 * 109.46736 * 305.85035 * 5 4 2 37 37 H 1.08996 * 109.50678 * 180.87537 * 6 5 4 38 38 H 1.09006 * 109.50364 * 60.76532 * 6 5 4 39 39 H 0.96705 * 114.00100 * 179.87179 * 8 7 6 40 40 H 1.08992 * 109.47046 * 304.99586 * 9 7 6 41 41 H 1.08997 * 109.47395 * 65.00126 * 9 7 6 42 42 H 0.97004 * 120.00552 * 359.97438 * 10 9 7 43 43 H 0.96996 * 120.00057 * 359.97438 * 13 11 10 44 44 H 1.08994 * 109.47268 * 299.99515 * 14 13 11 45 45 H 1.08997 * 109.47189 * 59.99850 * 14 13 11 46 46 H 0.97000 * 120.00216 * 359.97438 * 17 15 14 47 47 H 0.96998 * 120.00719 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.50678 * 62.29015 * 26 7 6 49 49 H 1.09005 * 109.50195 * 182.41136 * 26 7 6 50 50 H 1.08998 * 109.46026 * 294.17544 * 27 4 2 51 51 H 1.08994 * 109.46371 * 54.14476 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.4826 -0.8165 1.1749 6 6 3.9438 -1.6665 2.3611 7 6 3.4906 -1.0033 3.6647 8 8 4.1065 0.2803 3.7866 9 6 3.8958 -1.8796 4.8518 10 7 3.3587 -1.3056 6.0880 11 6 3.5912 -1.9120 7.2691 12 8 4.2462 -2.9355 7.3084 13 7 3.0967 -1.3842 8.4064 14 6 3.3489 -2.0437 9.6900 15 6 2.6928 -1.2578 10.7959 16 8 2.0756 -0.2461 10.5373 17 7 2.7926 -1.6785 12.0724 18 6 2.1961 -0.9633 13.0785 19 1 1.6459 -0.0630 12.8482 20 6 2.2986 -1.3974 14.3945 21 7 2.9677 -2.4931 14.6748 22 14 1.4853 -0.4232 15.7654 23 1 0.1008 -0.9193 15.9710 24 1 2.2624 -0.5903 17.0197 25 1 1.4462 1.0144 15.3952 26 6 1.9682 -0.8421 3.6438 27 6 1.5643 -0.0159 2.4205 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9322 0.1742 1.2416 36 1 3.7913 -1.2934 0.2447 37 1 5.0308 -1.7453 2.3515 38 1 3.5056 -2.6619 2.2877 39 1 3.8622 0.7591 4.5905 40 1 3.4967 -2.8845 4.7144 41 1 4.9829 -1.9258 4.9150 42 1 2.8365 -0.4888 6.0568 43 1 2.5738 -0.5678 8.3749 44 1 2.9373 -3.0526 9.6673 45 1 4.4231 -2.0934 9.8681 46 1 3.2865 -2.4873 12.2793 47 1 3.0395 -2.7960 15.5935 48 1 1.4988 -1.8244 3.5906 49 1 1.6438 -0.3317 4.5507 50 1 2.0229 0.9711 2.4813 51 1 0.4797 0.0887 2.3949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326921927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:28 Heat of formation + Delta-G solvation = -117.578965 kcal Electronic energy + Delta-G solvation = -30255.350882 eV Core-core repulsion = 25996.438195 eV Total energy + Delta-G solvation = -4258.912687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.67930 -39.66459 -38.28239 -37.62844 -34.50713 -34.25436 -33.84788 -33.64597 -31.39490 -31.33032 -30.59029 -28.00213 -27.62326 -26.34562 -24.42174 -23.91062 -22.73949 -20.81228 -20.72759 -19.69333 -19.60312 -18.62870 -18.04326 -16.72162 -16.63815 -16.24809 -15.81722 -15.55772 -15.41377 -15.12288 -14.84969 -14.62353 -14.57471 -14.45216 -14.13847 -14.08833 -13.73291 -13.47697 -13.27521 -13.19910 -12.92939 -12.63687 -12.31281 -12.19487 -12.16083 -11.87033 -11.82829 -11.70796 -11.63958 -11.48554 -11.32336 -11.13321 -11.01463 -10.68635 -10.46871 -10.33187 -10.12442 -10.07922 -9.64544 -9.23632 -8.64939 -8.63982 -8.58509 -8.10925 -6.52140 -3.94290 2.73139 3.10936 3.21514 3.26783 3.35501 3.48735 3.74010 3.85131 4.07360 4.25012 4.28917 4.37993 4.41399 4.54809 4.67636 4.87832 4.88692 4.89561 5.00862 5.01829 5.16497 5.19735 5.21241 5.27444 5.32076 5.38178 5.44329 5.47581 5.52944 5.58427 5.66925 5.72540 5.74582 5.81490 5.85636 5.90656 5.97080 5.99314 6.06947 6.38672 6.71777 6.76735 6.76978 6.98409 7.26143 7.45149 7.91453 8.17033 8.44170 8.74678 9.03760 9.38616 9.86354 10.64671 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.001731 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.707276 B =16168.139087 C =16881.548684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.077 3.923 3 C -0.187 4.187 4 N -0.532 5.532 5 C 0.058 3.942 6 C -0.099 4.099 7 C 0.124 3.876 8 O -0.553 6.553 9 C 0.116 3.884 10 N -0.750 5.750 11 C 0.705 3.295 12 O -0.595 6.595 13 N -0.724 5.724 14 C 0.128 3.872 15 C 0.428 3.572 16 O -0.599 6.599 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 C -0.143 4.143 27 C 0.054 3.946 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.375 0.625 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.392 0.608 43 H 0.406 0.594 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.396 0.604 47 H 0.274 0.726 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.044 0.956 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 3.664 -28.459 28.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.246 4.246 4 N -0.257 5.257 5 C -0.070 4.070 6 C -0.137 4.137 7 C 0.083 3.917 8 O -0.359 6.359 9 C -0.008 4.008 10 N -0.408 5.408 11 C 0.405 3.595 12 O -0.474 6.474 13 N -0.381 5.381 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.486 6.486 17 N -0.183 5.183 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.181 4.181 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.222 0.778 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.226 0.774 43 H 0.243 0.757 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.230 0.770 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.062 0.938 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.659 2.624 -28.926 29.052 hybrid contribution -0.465 1.619 1.504 2.258 sum -1.124 4.243 -27.422 27.771 Atomic orbital electron populations 1.21885 0.94299 1.02494 1.01698 1.21678 0.95763 0.92445 0.93297 1.22480 1.01632 0.98118 1.02355 1.62213 1.10777 1.50907 1.01758 1.21995 0.87383 0.99462 0.98150 1.21524 1.01603 0.99152 0.91416 1.21514 0.91878 0.83697 0.94653 1.86559 1.72179 1.30353 1.46831 1.21863 0.99729 0.97377 0.81879 1.45026 1.59829 1.30332 1.05590 1.15822 0.80185 0.83265 0.80236 1.90915 1.45059 1.25199 1.86194 1.44762 1.57898 1.30675 1.04773 1.20788 1.01034 0.96253 0.81924 1.19758 0.86794 0.87982 0.84067 1.90486 1.47617 1.27656 1.82809 1.41789 1.46703 1.25219 1.04625 1.19723 1.30222 1.08274 0.85265 0.87691 1.25328 0.97146 0.96560 0.98686 1.69612 1.40522 1.22151 1.21118 0.85811 0.78833 0.79826 0.79535 1.20277 1.20792 1.19342 1.22273 0.95549 1.02423 0.97838 1.22074 1.00392 0.95861 0.89080 0.92327 0.91783 0.92478 0.90072 0.92409 0.92216 0.92265 0.93494 0.90842 0.90347 0.89455 0.77753 0.90676 0.90734 0.77368 0.75670 0.89996 0.90001 0.77000 0.91576 0.89712 0.91156 0.93791 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.99 37.15 0.33 -0.51 16 2 C 0.08 0.49 2.96 -67.72 -0.20 0.29 16 3 C -0.19 -1.15 8.50 37.16 0.32 -0.84 16 4 N -0.53 -3.90 4.64 -226.70 -1.05 -4.96 16 5 C 0.06 0.42 4.89 -3.84 -0.02 0.41 16 6 C -0.10 -0.74 5.11 -26.65 -0.14 -0.87 16 7 C 0.12 0.97 0.72 -90.50 -0.06 0.91 16 8 O -0.55 -4.66 11.85 -35.23 -0.42 -5.07 16 9 C 0.12 1.17 4.85 -4.04 -0.02 1.15 16 10 N -0.75 -8.29 5.05 -65.23 -0.33 -8.62 16 11 C 0.71 11.12 8.57 -86.92 -0.74 10.38 16 12 O -0.60 -11.55 16.34 5.29 0.09 -11.47 16 13 N -0.72 -11.85 5.53 -66.42 -0.37 -12.21 16 14 C 0.13 2.37 6.15 -5.19 -0.03 2.34 16 15 C 0.43 9.74 7.85 -10.98 -0.09 9.65 16 16 O -0.60 -15.11 15.24 5.55 0.08 -15.02 16 17 N -0.55 -13.53 5.29 -10.96 -0.06 -13.59 16 18 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 19 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.78 13.05 55.50 0.72 -23.06 16 22 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 26 C -0.14 -1.05 4.81 -26.65 -0.13 -1.17 16 27 C 0.05 0.39 4.50 -3.83 -0.02 0.37 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.34 6.30 -51.93 -0.33 0.01 16 31 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.06 0.39 6.65 -51.92 -0.35 0.04 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.40 6.52 -51.93 -0.34 0.06 16 35 H 0.05 0.40 6.35 -51.93 -0.33 0.07 16 36 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.37 2.39 8.19 45.56 0.37 2.76 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.39 3.33 6.42 -40.82 -0.26 3.07 16 43 H 0.41 6.38 7.45 -40.82 -0.30 6.08 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 46 H 0.40 9.42 7.90 -40.82 -0.32 9.09 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.47 6.68 -51.93 -0.35 0.12 16 50 H 0.04 0.35 6.24 -51.93 -0.32 0.02 16 51 H 0.08 0.55 6.03 -51.93 -0.31 0.23 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -32.16 398.72 -8.80 -40.96 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -7.42 Total: 17.34 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -1.04 Total: 14.27 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -1.08 Total: -62.43 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.25 Total: -31.56 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.16 -8.80 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326921927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.620 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds