Wall clock time and date at job start Wed Apr 1 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46945 * 2 1 4 4 N 1.46898 * 109.47440 * 120.00573 * 2 1 3 5 5 C 1.46839 * 111.00046 * 175.00000 * 4 2 1 6 6 C 1.53037 * 109.52335 * 185.83589 * 5 4 2 7 7 C 1.53117 * 109.27955 * 300.82269 * 6 5 4 8 8 O 1.42898 * 109.51900 * 297.68019 * 7 6 5 9 9 C 1.53006 * 109.52168 * 177.55775 * 7 6 5 10 10 N 1.46498 * 109.46687 * 184.99667 * 9 7 6 11 11 C 1.34782 * 119.99965 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99720 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00084 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99731 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46894 * 179.97438 * 14 13 11 16 16 O 1.21292 * 120.00099 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99867 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99888 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00148 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99901 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99934 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47048 * 90.00435 * 22 20 18 24 24 H 1.48504 * 109.46916 * 210.00469 * 22 20 18 25 25 H 1.48500 * 109.47191 * 329.99984 * 22 20 18 26 26 C 1.53112 * 109.16138 * 57.65257 * 7 6 5 27 27 C 1.46852 * 110.99517 * 299.20801 * 4 2 1 28 28 H 1.09005 * 109.47502 * 59.99206 * 1 2 3 29 29 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47331 * 299.99805 * 1 2 3 31 31 H 1.09004 * 109.46648 * 240.00464 * 2 1 3 32 32 H 1.09007 * 109.47042 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47766 * 299.99930 * 3 2 1 34 34 H 1.08994 * 109.46975 * 60.00848 * 3 2 1 35 35 H 1.08997 * 109.46735 * 65.82375 * 5 4 2 36 36 H 1.08996 * 109.46736 * 305.85035 * 5 4 2 37 37 H 1.08996 * 109.50678 * 180.87537 * 6 5 4 38 38 H 1.09006 * 109.50364 * 60.76532 * 6 5 4 39 39 H 0.96705 * 114.00100 * 179.87179 * 8 7 6 40 40 H 1.08992 * 109.47046 * 304.99586 * 9 7 6 41 41 H 1.08997 * 109.47395 * 65.00126 * 9 7 6 42 42 H 0.97004 * 120.00552 * 359.97438 * 10 9 7 43 43 H 0.96996 * 120.00057 * 359.97438 * 13 11 10 44 44 H 1.08994 * 109.47268 * 299.99515 * 14 13 11 45 45 H 1.08997 * 109.47189 * 59.99850 * 14 13 11 46 46 H 0.97000 * 120.00216 * 359.97438 * 17 15 14 47 47 H 0.96998 * 120.00719 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.50678 * 62.29015 * 26 7 6 49 49 H 1.09005 * 109.50195 * 182.41136 * 26 7 6 50 50 H 1.08998 * 109.46026 * 294.17544 * 27 4 2 51 51 H 1.08994 * 109.46371 * 54.14476 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.4826 -0.8165 1.1749 6 6 3.9438 -1.6665 2.3611 7 6 3.4906 -1.0033 3.6647 8 8 4.1065 0.2803 3.7866 9 6 3.8958 -1.8796 4.8518 10 7 3.3587 -1.3056 6.0880 11 6 3.5912 -1.9120 7.2691 12 8 4.2462 -2.9355 7.3084 13 7 3.0967 -1.3842 8.4064 14 6 3.3489 -2.0437 9.6900 15 6 2.6928 -1.2578 10.7959 16 8 2.0756 -0.2461 10.5373 17 7 2.7926 -1.6785 12.0724 18 6 2.1961 -0.9633 13.0785 19 1 1.6459 -0.0630 12.8482 20 6 2.2986 -1.3974 14.3945 21 7 2.9677 -2.4931 14.6748 22 14 1.4853 -0.4232 15.7654 23 1 0.1008 -0.9193 15.9710 24 1 2.2624 -0.5903 17.0197 25 1 1.4462 1.0144 15.3952 26 6 1.9682 -0.8421 3.6438 27 6 1.5643 -0.0159 2.4205 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9322 0.1742 1.2416 36 1 3.7913 -1.2934 0.2447 37 1 5.0308 -1.7453 2.3515 38 1 3.5056 -2.6619 2.2877 39 1 3.8622 0.7591 4.5905 40 1 3.4967 -2.8845 4.7144 41 1 4.9829 -1.9258 4.9150 42 1 2.8365 -0.4888 6.0568 43 1 2.5738 -0.5678 8.3749 44 1 2.9373 -3.0526 9.6673 45 1 4.4231 -2.0934 9.8681 46 1 3.2865 -2.4873 12.2793 47 1 3.0395 -2.7960 15.5935 48 1 1.4988 -1.8244 3.5906 49 1 1.6438 -0.3317 4.5507 50 1 2.0229 0.9711 2.4813 51 1 0.4797 0.0887 2.3949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326921927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:26 Heat of formation + Delta-G solvation = -144.667736 kcal Electronic energy + Delta-G solvation = -30256.525539 eV Core-core repulsion = 25996.438195 eV Total energy + Delta-G solvation = -4260.087344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54745 -40.78803 -39.96424 -38.37630 -36.24633 -35.31140 -35.27166 -34.45014 -33.36144 -31.92730 -31.32304 -29.36228 -28.10155 -27.44816 -26.15418 -24.51424 -23.49449 -21.93605 -21.42144 -21.34783 -20.27587 -20.13428 -19.74427 -17.78016 -17.45777 -17.25004 -17.02856 -16.92705 -16.48908 -16.19473 -16.03570 -15.83514 -15.65331 -15.56055 -15.18980 -15.03994 -14.98251 -14.53650 -14.18060 -13.94764 -13.80802 -13.62424 -13.53612 -13.44726 -13.20037 -12.92049 -12.86263 -12.67091 -12.44850 -12.41894 -12.27397 -12.12382 -12.00348 -11.91432 -11.57686 -11.56180 -11.48984 -11.25966 -10.77760 -10.54759 -10.46530 -10.09647 -9.85668 -9.15498 -8.50190 -6.00399 1.37079 1.42905 1.52692 1.59014 1.90522 2.10070 2.29000 2.93529 3.02824 3.17098 3.23250 3.30760 3.53819 3.70534 3.79220 3.99841 4.15885 4.21525 4.31118 4.33980 4.42295 4.44022 4.46184 4.47000 4.54280 4.64688 4.68503 4.73330 4.78392 4.85311 4.89467 4.94501 5.02870 5.06481 5.13992 5.16624 5.27544 5.30029 5.35369 5.38574 5.40091 5.43575 5.87355 5.93525 6.20556 6.23048 6.48744 6.68862 6.98773 7.04257 7.43022 7.51330 7.95169 8.66614 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.001731 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.707276 B =16168.139087 C =16881.548684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.181 4.181 4 N -0.538 5.538 5 C 0.062 3.938 6 C -0.100 4.100 7 C 0.135 3.865 8 O -0.562 6.562 9 C 0.119 3.881 10 N -0.729 5.729 11 C 0.705 3.295 12 O -0.631 6.631 13 N -0.722 5.722 14 C 0.142 3.858 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.270 1.270 26 C -0.140 4.140 27 C 0.057 3.943 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.384 0.616 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.407 0.593 43 H 0.411 0.589 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.399 0.601 47 H 0.280 0.720 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.039 0.961 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 4.137 -29.217 29.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.240 4.240 4 N -0.262 5.262 5 C -0.066 4.066 6 C -0.139 4.139 7 C 0.094 3.906 8 O -0.369 6.369 9 C -0.005 4.005 10 N -0.387 5.387 11 C 0.405 3.595 12 O -0.513 6.513 13 N -0.380 5.380 14 C 0.013 3.987 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.195 5.195 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.820 3.180 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.194 1.194 26 C -0.178 4.178 27 C -0.071 4.071 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.244 0.756 43 H 0.248 0.752 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.233 0.767 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.057 0.943 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.185 3.121 -29.724 29.911 hybrid contribution -0.290 1.481 1.637 2.227 sum -1.475 4.602 -28.087 28.500 Atomic orbital electron populations 1.21854 0.93789 1.02267 1.02101 1.21738 0.96151 0.92468 0.93009 1.22419 1.01110 0.98023 1.02464 1.62241 1.10694 1.51177 1.02126 1.21953 0.87398 0.98848 0.98400 1.21556 1.01724 0.99359 0.91224 1.21403 0.92250 0.83177 0.93769 1.86558 1.72404 1.30420 1.47510 1.21933 0.98918 0.97775 0.81902 1.44858 1.58997 1.30326 1.04502 1.15920 0.79753 0.82928 0.80897 1.90895 1.46687 1.26901 1.86782 1.44655 1.58227 1.30772 1.04347 1.20580 1.00978 0.95876 0.81285 1.20406 0.85615 0.87527 0.84341 1.90464 1.48498 1.28870 1.83329 1.41838 1.47190 1.25403 1.05057 1.19737 1.31654 1.08612 0.86609 0.89504 1.26130 0.97307 0.97384 1.00354 1.69678 1.40991 1.23003 1.21906 0.84865 0.78110 0.78239 0.76747 1.19588 1.19736 1.19433 1.22249 0.94851 1.02302 0.98386 1.22039 1.00548 0.95486 0.89030 0.91292 0.92281 0.92726 0.89712 0.93098 0.91332 0.92890 0.94584 0.90004 0.90312 0.89071 0.76749 0.91064 0.91955 0.75592 0.75158 0.89065 0.89127 0.76709 0.91096 0.90194 0.90334 0.94305 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.99 71.98 0.65 -0.80 16 2 C 0.07 0.85 2.96 44.91 0.13 0.98 16 3 C -0.18 -2.02 8.50 71.98 0.61 -1.41 16 4 N -0.54 -7.21 4.64 -871.14 -4.04 -11.26 16 5 C 0.06 0.84 4.89 86.33 0.42 1.26 16 6 C -0.10 -1.39 5.11 30.65 0.16 -1.23 16 7 C 0.14 1.96 0.72 -10.71 -0.01 1.95 16 8 O -0.56 -8.70 11.85 -148.98 -1.77 -10.46 16 9 C 0.12 2.27 4.85 86.38 0.42 2.69 16 10 N -0.73 -15.14 5.05 -478.54 -2.42 -17.55 16 11 C 0.71 21.50 8.57 179.05 1.53 23.03 16 12 O -0.63 -24.06 16.34 -3.98 -0.07 -24.13 16 13 N -0.72 -22.89 5.53 -482.31 -2.67 -25.56 16 14 C 0.14 5.12 6.15 85.63 0.53 5.64 16 15 C 0.43 19.71 7.85 87.66 0.69 20.40 16 16 O -0.62 -31.48 15.24 -3.07 -0.05 -31.52 16 17 N -0.56 -27.82 5.29 -306.98 -1.62 -29.44 16 18 C -0.34 -18.39 9.68 84.04 0.81 -17.57 16 19 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 20 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 21 N -0.92 -48.42 13.05 21.66 0.28 -48.14 16 22 Si 1.00 41.45 29.55 68.60 2.03 43.47 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 C -0.14 -1.84 4.81 30.65 0.15 -1.69 16 27 C 0.06 0.75 4.50 86.33 0.39 1.14 16 28 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.58 6.30 -2.39 -0.02 0.56 16 31 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.05 0.64 6.65 -2.38 -0.02 0.62 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.66 6.52 -2.39 -0.02 0.64 16 35 H 0.04 0.57 6.35 -2.39 -0.02 0.56 16 36 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.38 4.26 8.19 -74.05 -0.61 3.65 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.41 6.17 6.42 -92.71 -0.59 5.58 16 43 H 0.41 12.43 7.45 -92.71 -0.69 11.74 16 44 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 47 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 48 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 49 H 0.08 0.89 6.68 -2.38 -0.02 0.88 16 50 H 0.04 0.56 6.24 -2.39 -0.01 0.55 16 51 H 0.08 1.03 6.03 -2.39 -0.01 1.01 16 Total: -1.00 -67.75 398.72 -5.01 -72.76 By element: Atomic # 1 Polarization: 49.19 SS G_CDS: -1.63 Total: 47.56 kcal Atomic # 6 Polarization: 27.33 SS G_CDS: 6.95 Total: 34.28 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -10.47 Total: -131.95 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: -1.88 Total: -66.11 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -67.75 -5.01 -72.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326921927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.912 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds