Wall clock time and date at job start Wed Apr 1 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47080 * 2 1 4 4 C 1.53004 * 109.46916 * 174.83255 * 3 2 1 5 5 H 1.08997 * 109.47606 * 304.97056 * 4 3 2 6 6 C 1.50700 * 109.46941 * 64.97150 * 4 3 2 7 7 O 1.21281 * 120.00494 * 34.13038 * 6 4 3 8 8 N 1.34775 * 119.99843 * 214.13714 * 6 4 3 9 9 C 1.46500 * 120.00088 * 174.92938 * 8 6 4 10 10 C 1.53003 * 109.47264 * 179.97438 * 9 8 6 11 11 H 1.08997 * 115.51374 * 330.41779 * 10 9 8 12 12 C 1.53000 * 117.44293 * 184.99507 * 10 9 8 13 13 H 1.08993 * 119.54072 * 4.12341 * 12 10 9 14 14 C 1.54389 * 118.11863 * 160.81138 * 12 10 9 15 15 N 1.48140 * 104.62228 * 87.19343 * 14 12 10 16 16 C 1.36939 * 127.84260 * 140.38936 * 15 14 12 17 17 H 1.08002 * 119.99542 * 195.67262 * 16 15 14 18 18 C 1.38809 * 119.99722 * 15.66967 * 16 15 14 19 19 N 1.31614 * 120.00104 * 7.73760 * 18 16 15 20 20 Si 1.86804 * 119.99960 * 187.73006 * 18 16 15 21 21 H 1.48495 * 109.46739 * 60.00171 * 20 18 16 22 22 H 1.48495 * 109.47156 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46988 * 300.00411 * 20 18 16 24 24 C 1.48151 * 104.32079 * 320.41533 * 15 14 12 25 25 C 1.53000 * 117.44234 * 115.75638 * 10 9 8 26 26 H 1.09001 * 119.54142 * 355.88155 * 25 10 9 27 27 C 1.50696 * 109.46861 * 184.96420 * 4 3 2 28 28 C 1.38235 * 120.00350 * 299.73134 * 27 4 3 29 29 C 1.38239 * 119.99944 * 179.78714 * 28 27 4 30 30 C 1.38228 * 119.99933 * 0.46435 * 29 28 27 31 31 C 1.38239 * 120.00241 * 359.76560 * 30 29 28 32 32 C 1.38233 * 119.99658 * 0.02562 * 31 30 29 33 33 H 1.09001 * 109.47177 * 60.00277 * 1 2 3 34 34 H 1.08994 * 109.47220 * 299.99827 * 1 2 3 35 35 H 1.09001 * 109.46819 * 179.97438 * 1 2 3 36 36 H 1.08999 * 109.47131 * 120.00501 * 2 1 3 37 37 H 1.09004 * 109.47290 * 240.00245 * 2 1 3 38 38 H 1.08998 * 109.47021 * 294.83761 * 3 2 1 39 39 H 1.08998 * 109.46779 * 54.83778 * 3 2 1 40 40 H 0.97001 * 120.00414 * 354.92017 * 8 6 4 41 41 H 1.09003 * 109.46898 * 299.99231 * 9 8 6 42 42 H 1.08999 * 109.47736 * 59.99456 * 9 8 6 43 43 H 1.09002 * 110.40316 * 205.97768 * 14 12 10 44 44 H 1.08999 * 110.40777 * 328.40645 * 14 12 10 45 45 H 0.96997 * 120.00195 * 179.97438 * 19 18 16 46 46 H 1.09007 * 110.40320 * 280.80173 * 24 15 14 47 47 H 1.09000 * 110.50636 * 158.42088 * 24 15 14 48 48 H 1.07993 * 120.00017 * 359.97438 * 28 27 4 49 49 H 1.08005 * 119.99961 * 180.24954 * 29 28 27 50 50 H 1.08001 * 119.99856 * 179.79025 * 30 29 28 51 51 H 1.07997 * 120.00278 * 179.97438 * 31 30 29 52 52 H 1.08001 * 119.99370 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 0.1299 5 1 3.8543 0.8814 1.0171 6 6 4.1735 0.8056 -1.0916 7 8 3.6459 0.9432 -2.1749 8 7 5.3045 0.0811 -0.9801 9 6 5.8357 -0.6315 -2.1447 10 6 7.1168 -1.3694 -1.7505 11 1 7.6961 -0.9094 -0.9500 12 6 7.8907 -2.0815 -2.8617 13 1 7.5548 -1.9895 -3.8945 14 6 9.3714 -2.4358 -2.6052 15 7 9.3297 -3.7602 -1.9430 16 6 10.1706 -4.8234 -2.1371 17 1 9.8889 -5.8056 -1.7873 18 6 11.3850 -4.6387 -2.7835 19 7 11.7978 -3.4232 -3.0739 20 14 12.4337 -6.1154 -3.2411 21 1 11.6701 -6.9995 -4.1579 22 1 13.6724 -5.6525 -3.9167 23 1 12.7921 -6.8678 -2.0122 24 6 8.1714 -3.6739 -1.0234 25 6 7.0995 -2.8978 -1.8186 26 1 6.1742 -3.4140 -2.0744 27 6 4.0563 2.8636 0.2525 28 6 3.8111 3.7702 -0.7617 29 6 4.2585 5.0732 -0.6472 30 6 4.9594 5.4669 0.4772 31 6 5.2088 4.5591 1.4894 32 6 4.7577 3.2573 1.3768 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 0.5138 0.8899 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8933 -0.5139 0.8899 37 1 1.8934 -0.5138 -0.8900 38 1 1.7541 1.9289 -0.9326 39 1 1.6031 1.9823 0.8401 40 1 5.7669 0.0315 -0.1288 41 1 5.0966 -1.3501 -2.4992 42 1 6.0576 0.0826 -2.9377 43 1 9.9157 -2.4990 -3.5475 44 1 9.8308 -1.6969 -1.9487 45 1 12.6466 -3.2940 -3.5253 46 1 8.4434 -3.1282 -0.1197 47 1 7.8096 -4.6704 -0.7703 48 1 3.2674 3.4614 -1.6422 49 1 4.0634 5.7826 -1.4379 50 1 5.3119 6.4840 0.5651 51 1 5.7568 4.8666 2.3677 52 1 4.9529 2.5479 2.1675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330361746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:47 Heat of formation + Delta-G solvation = 26.539032 kcal Electronic energy + Delta-G solvation = -29154.996106 eV Core-core repulsion = 25313.182108 eV Total energy + Delta-G solvation = -3841.813999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.58636 -39.14361 -38.59718 -35.78719 -34.88330 -33.36878 -32.67576 -31.14340 -30.84125 -29.01145 -27.46374 -27.11682 -25.30740 -24.32161 -22.91099 -22.04328 -21.55621 -21.12523 -20.40776 -19.51688 -19.23704 -17.46136 -17.08565 -16.81614 -16.08409 -15.71092 -15.30363 -15.04552 -14.92417 -14.72827 -14.29981 -14.06061 -13.87905 -13.70780 -13.47015 -13.39987 -12.99151 -12.88780 -12.71272 -12.61746 -12.58720 -11.92862 -11.84431 -11.80012 -11.46761 -11.26730 -11.19242 -11.10339 -10.96922 -10.84817 -10.83058 -10.65993 -10.30960 -10.16936 -9.99606 -9.74975 -9.40816 -9.17099 -9.15273 -8.94674 -8.89309 -8.64271 -6.87680 -5.80302 -3.15411 1.04073 1.16124 2.57332 3.09645 3.37989 3.42506 3.43756 3.54092 4.13413 4.30785 4.44823 4.47957 4.59907 4.73503 4.78616 4.85465 4.87865 4.93772 4.94618 5.05532 5.25738 5.29407 5.31902 5.34806 5.38847 5.44197 5.50629 5.50631 5.57360 5.67157 5.72766 5.79930 5.80838 5.87438 5.89871 5.91945 5.96412 6.02966 6.09297 6.20545 6.22582 6.28123 6.32802 6.38265 6.55491 6.65440 6.70522 6.73708 6.91023 7.35141 7.46924 7.52715 7.70956 8.16579 8.20687 9.10232 9.72870 10.49935 11.33667 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.002118 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.762092 B =13217.626182 C =14452.281320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.098 4.098 4 C -0.067 4.067 5 H 0.096 0.904 6 C 0.523 3.477 7 O -0.539 6.539 8 N -0.722 5.722 9 C 0.155 3.845 10 C -0.150 4.150 11 H 0.102 0.898 12 C -0.161 4.161 13 H 0.103 0.897 14 C 0.183 3.817 15 N -0.594 5.594 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.006 4.006 19 N -0.917 5.917 20 Si 0.914 3.086 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.154 3.846 25 C -0.171 4.171 26 H 0.102 0.898 27 C -0.079 4.079 28 C -0.103 4.103 29 C -0.120 4.120 30 C -0.120 4.120 31 C -0.120 4.120 32 C -0.111 4.111 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.023 0.977 45 H 0.255 0.745 46 H 0.023 0.977 47 H 0.049 0.951 48 H 0.128 0.872 49 H 0.122 0.878 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 15.513 9.579 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.136 4.136 4 C -0.088 4.088 5 H 0.114 0.886 6 C 0.309 3.691 7 O -0.416 6.416 8 N -0.373 5.373 9 C 0.032 3.968 10 C -0.169 4.169 11 H 0.120 0.880 12 C -0.182 4.182 13 H 0.121 0.879 14 C 0.058 3.942 15 N -0.318 5.318 16 C -0.356 4.356 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.563 5.563 20 Si 0.743 3.257 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.210 1.210 24 C 0.028 3.972 25 C -0.191 4.191 26 H 0.120 0.880 27 C -0.079 4.079 28 C -0.121 4.121 29 C -0.138 4.138 30 C -0.138 4.138 31 C -0.139 4.139 32 C -0.129 4.129 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.236 0.764 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.041 0.959 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.068 0.932 48 H 0.146 0.854 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.141 0.859 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.683 15.472 8.679 26.498 hybrid contribution 0.881 -0.729 0.153 1.153 sum -18.802 14.743 8.832 25.473 Atomic orbital electron populations 1.21727 0.95585 1.01652 1.01710 1.21582 0.96252 0.96449 1.02316 1.21527 0.91080 0.97699 1.03299 1.20370 0.97426 0.93450 0.97560 0.88575 1.20359 0.80386 0.78085 0.90317 1.90681 1.62031 1.60435 1.28431 1.46083 1.26300 1.50536 1.14352 1.20867 0.93603 0.94810 0.87560 1.22527 0.97491 0.93991 1.02861 0.87995 1.24239 0.98253 1.01932 0.93768 0.87928 1.21083 0.87880 0.86104 0.99175 1.45192 1.31225 1.12380 1.42977 1.18956 0.96024 0.86821 1.33793 0.90636 1.24903 0.96691 0.96725 1.01949 1.69870 1.21670 1.19036 1.45696 0.86182 0.79574 0.81595 0.78305 1.21058 1.21524 1.20990 1.21134 0.87444 0.96742 0.91896 1.23991 1.00268 0.90783 1.04092 0.87978 1.19442 0.99277 0.93948 0.95239 1.21170 0.99270 0.93116 0.98585 1.21173 0.98424 0.96134 0.98021 1.21197 0.98761 0.99674 0.94151 1.21131 1.00101 0.93509 0.99110 1.21072 0.97952 0.96511 0.97390 0.92656 0.92845 0.92734 0.92058 0.91546 0.90360 0.91051 0.76449 0.91521 0.91192 0.89019 0.95940 0.93482 0.95894 0.93219 0.85385 0.85998 0.86116 0.85923 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.12 5.66 -26.73 -0.15 -1.27 16 3 C -0.10 -0.85 4.18 -26.73 -0.11 -0.97 16 4 C -0.07 -0.61 2.36 -92.92 -0.22 -0.83 16 5 H 0.10 0.69 7.88 -51.93 -0.41 0.28 16 6 C 0.52 6.32 5.62 -10.99 -0.06 6.26 16 7 O -0.54 -8.28 15.41 5.56 0.09 -8.19 16 8 N -0.72 -8.35 5.55 -60.29 -0.33 -8.69 16 9 C 0.15 2.10 5.96 -4.04 -0.02 2.08 16 10 C -0.15 -2.28 5.39 -90.62 -0.49 -2.77 16 11 H 0.10 1.55 8.04 -51.93 -0.42 1.14 16 12 C -0.16 -3.05 6.85 -89.22 -0.61 -3.66 16 13 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 14 C 0.18 4.39 5.71 -2.41 -0.01 4.37 16 15 N -0.59 -15.19 3.38 -168.86 -0.57 -15.76 16 16 C -0.23 -6.34 10.36 -15.06 -0.16 -6.50 16 17 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 18 C -0.01 -0.16 5.41 -17.43 -0.09 -0.25 16 19 N -0.92 -26.79 10.81 55.49 0.60 -26.19 16 20 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.15 3.19 7.04 -2.41 -0.02 3.17 16 25 C -0.17 -2.99 6.74 -89.22 -0.60 -3.59 16 26 H 0.10 1.65 8.12 -51.93 -0.42 1.23 16 27 C -0.08 -0.75 4.77 -104.63 -0.50 -1.25 16 28 C -0.10 -1.06 8.85 -39.58 -0.35 -1.41 16 29 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 30 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 31 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 32 C -0.11 -0.93 9.67 -39.58 -0.38 -1.31 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.72 7.34 -51.93 -0.38 0.33 16 38 H 0.08 0.79 7.12 -51.93 -0.37 0.42 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 3.82 8.41 -40.82 -0.34 3.48 16 41 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 2.46 6.47 -51.93 -0.34 2.13 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.13 1.40 7.18 -52.49 -0.38 1.02 16 49 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 50 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 52 H 0.12 0.78 7.95 -52.49 -0.42 0.37 16 LS Contribution 418.84 15.07 6.31 6.31 Total: -1.00 -31.87 418.84 -12.47 -44.34 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.93 Total: 4.22 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -4.61 Total: -12.92 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.31 Total: -50.63 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -31.87 -12.47 -44.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330361746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.882 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds