Wall clock time and date at job start Wed Apr 1 2020 02:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34775 * 120.00379 * 2 1 4 4 O 1.21585 * 119.99578 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00547 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00441 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.47444 * 174.48367 * 6 5 3 8 8 H 1.09006 * 109.67616 * 309.00835 * 7 6 5 9 9 C 1.53298 * 109.68462 * 188.45670 * 7 6 5 10 10 O 1.42956 * 109.22089 * 187.97082 * 9 7 6 11 11 C 1.42968 * 114.16878 * 62.58533 * 10 9 7 12 12 C 1.53294 * 109.21697 * 297.41688 * 11 10 9 13 13 N 1.47145 * 109.68353 * 69.52743 * 7 6 5 14 14 C 1.34775 * 120.98371 * 350.28193 * 13 7 6 15 15 O 1.21586 * 119.99831 * 5.99784 * 14 13 7 16 16 N 1.34775 * 120.00128 * 185.99915 * 14 13 7 17 17 C 1.46506 * 119.99817 * 175.01956 * 16 14 13 18 18 C 1.53002 * 109.47126 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47306 * 300.00439 * 18 17 16 20 20 C 1.52999 * 109.46936 * 60.00509 * 18 17 16 21 21 C 1.50700 * 109.47278 * 180.02562 * 18 17 16 22 22 H 1.08002 * 119.99738 * 0.02562 * 21 18 17 23 23 C 1.37875 * 120.00001 * 180.02562 * 21 18 17 24 24 N 1.31508 * 119.99864 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 119.99722 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47251 * 60.00429 * 25 23 21 27 27 H 1.48504 * 109.46709 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47188 * 299.99737 * 25 23 21 29 29 H 1.09001 * 109.47243 * 299.99458 * 1 2 3 30 30 H 1.09003 * 109.47376 * 59.99822 * 1 2 3 31 31 H 1.09002 * 109.47562 * 179.97438 * 1 2 3 32 32 H 0.97008 * 120.00159 * 180.02562 * 2 1 3 33 33 H 0.97002 * 119.99518 * 0.02562 * 5 3 2 34 34 H 1.08998 * 109.47010 * 54.47943 * 6 5 3 35 35 H 1.09005 * 109.47053 * 294.48426 * 6 5 3 36 36 H 1.08999 * 109.50602 * 307.89858 * 9 7 6 37 37 H 1.09004 * 109.50967 * 68.04618 * 9 7 6 38 38 H 1.08992 * 109.51410 * 177.49301 * 11 10 9 39 39 H 1.08998 * 109.50978 * 57.33301 * 11 10 9 40 40 H 1.09000 * 109.68189 * 292.57474 * 12 11 10 41 41 H 1.08995 * 109.68033 * 172.02761 * 12 11 10 42 42 H 0.96997 * 120.00339 * 355.02004 * 16 14 13 43 43 H 1.08996 * 109.47209 * 300.00175 * 17 16 14 44 44 H 1.08999 * 109.46891 * 60.00520 * 17 16 14 45 45 H 1.08998 * 109.47342 * 59.99882 * 19 18 17 46 46 H 1.09003 * 109.47201 * 179.97438 * 19 18 17 47 47 H 1.08999 * 109.47325 * 299.99717 * 19 18 17 48 48 H 1.08996 * 109.47331 * 59.99728 * 20 18 17 49 49 H 1.08991 * 109.47403 * 180.02562 * 20 18 17 50 50 H 1.09010 * 109.46892 * 300.00120 * 20 18 17 51 51 H 0.97005 * 119.99829 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2192 2.4358 0.0011 7 6 5.7175 2.1596 0.1403 8 1 5.8914 1.4968 0.9880 9 6 6.4683 3.4791 0.3532 10 8 7.8756 3.2344 0.2961 11 6 8.3335 2.7425 -0.9658 12 6 7.6782 1.3853 -1.2462 13 7 6.2223 1.5320 -1.0912 14 6 5.3761 1.1044 -2.0491 15 8 4.1855 1.3318 -1.9542 16 7 5.8497 0.4247 -3.1122 17 6 4.9205 -0.1344 -4.0973 18 6 5.7106 -0.8506 -5.1945 19 6 6.6453 0.1458 -5.8832 20 6 6.5362 -1.9795 -4.5742 21 6 4.7548 -1.4253 -6.2081 22 1 3.6904 -1.2925 -6.0825 23 6 5.2393 -2.1205 -7.2957 24 7 6.5354 -2.2825 -7.4483 25 14 4.0546 -2.8321 -8.5525 26 1 3.2546 -1.7357 -9.1550 27 1 4.8214 -3.5284 -9.6167 28 1 3.1462 -3.7986 -7.8847 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 3.9716 0.3271 0.0005 34 1 3.8835 3.0488 0.8375 35 1 4.0324 2.9637 -0.9342 36 1 6.1897 4.1865 -0.4279 37 1 6.2097 3.8918 1.3284 38 1 9.4168 2.6253 -0.9395 39 1 8.0616 3.4473 -1.7516 40 1 8.0501 0.6448 -0.5380 41 1 7.9092 1.0694 -2.2635 42 1 6.8057 0.3058 -3.2252 43 1 4.2544 -0.8440 -3.6066 44 1 4.3326 0.6698 -4.5396 45 1 7.3366 0.5618 -5.1503 46 1 7.2084 -0.3646 -6.6645 47 1 6.0571 0.9500 -6.3251 48 1 5.8704 -2.6894 -4.0835 49 1 7.0994 -2.4895 -5.3556 50 1 7.2276 -1.5635 -3.8412 51 1 6.8763 -2.7713 -8.2137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001370775725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:23 Heat of formation + Delta-G solvation = -56.267034 kcal Electronic energy + Delta-G solvation = -32525.853739 eV Core-core repulsion = 28269.599737 eV Total energy + Delta-G solvation = -4256.254002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93413 -39.36460 -38.54210 -36.71508 -35.14185 -34.64985 -34.17692 -32.97369 -31.81901 -30.73738 -28.42527 -26.99214 -25.79322 -25.65028 -25.18251 -24.81164 -22.92251 -22.08090 -20.64418 -19.78129 -18.92368 -18.53147 -17.62440 -16.82517 -16.33924 -15.99534 -15.93141 -15.63004 -15.39833 -15.24619 -14.92706 -14.66838 -14.42007 -14.12850 -14.09098 -13.56341 -13.45233 -13.14813 -12.92236 -12.72285 -12.60411 -12.33196 -12.20933 -12.13624 -11.72353 -11.57350 -11.45339 -11.23375 -11.02828 -10.89914 -10.76386 -10.47010 -10.40582 -10.23453 -9.95062 -9.70109 -9.41405 -9.16597 -9.06293 -8.86040 -8.85009 -8.44734 -8.27684 -8.01918 -6.06537 -4.16562 2.62977 2.99014 3.27064 3.31515 3.35428 3.45204 3.51898 3.67360 4.14598 4.34667 4.38503 4.60563 4.69076 4.77240 4.82603 4.97780 4.99161 5.20468 5.25038 5.27022 5.39610 5.48764 5.57512 5.60714 5.63798 5.85659 6.05367 6.15597 6.29564 6.41410 6.44102 6.65112 6.71565 6.74605 6.76816 6.83089 6.83973 6.96335 7.02876 7.11663 7.14232 7.31779 7.49651 7.64906 7.95099 8.06496 8.28059 8.30045 8.35164 8.82654 8.93665 8.95765 9.49478 10.94842 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.003781 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.953447 B = 7403.887346 C = 9892.120167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.755 5.755 3 C 0.711 3.289 4 O -0.606 6.606 5 N -0.702 5.702 6 C 0.159 3.841 7 C 0.120 3.880 8 H 0.081 0.919 9 C 0.055 3.945 10 O -0.377 6.377 11 C 0.047 3.953 12 C 0.079 3.921 13 N -0.640 5.640 14 C 0.688 3.312 15 O -0.564 6.564 16 N -0.733 5.733 17 C 0.153 3.847 18 C 0.056 3.944 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.506 4.506 22 H 0.056 0.944 23 C 0.067 3.933 24 N -0.886 5.886 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.394 0.606 33 H 0.389 0.611 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.390 0.610 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.003 0.997 46 H 0.085 0.915 47 H 0.026 0.974 48 H 0.025 0.975 49 H 0.085 0.915 50 H 0.003 0.997 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 5.364 16.374 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.410 5.410 3 C 0.411 3.589 4 O -0.486 6.486 5 N -0.355 5.355 6 C 0.034 3.966 7 C 0.015 3.985 8 H 0.099 0.901 9 C -0.023 4.023 10 O -0.295 6.295 11 C -0.031 4.031 12 C -0.045 4.045 13 N -0.381 5.381 14 C 0.390 3.610 15 O -0.441 6.441 16 N -0.389 5.389 17 C 0.030 3.970 18 C 0.056 3.944 19 C -0.186 4.186 20 C -0.185 4.185 21 C -0.544 4.544 22 H 0.074 0.926 23 C -0.134 4.134 24 N -0.525 5.525 25 Si 0.721 3.279 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.227 0.773 33 H 0.223 0.777 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.227 0.773 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.022 0.978 46 H 0.104 0.896 47 H 0.045 0.955 48 H 0.045 0.955 49 H 0.104 0.896 50 H 0.022 0.978 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.705 6.431 16.417 17.713 hybrid contribution 0.263 -1.474 -1.202 1.920 sum 1.967 4.956 15.215 16.122 Atomic orbital electron populations 1.21287 0.78779 1.01434 1.01837 1.44823 1.07383 1.07293 1.81506 1.15748 0.81778 0.83881 0.77463 1.90858 1.68149 1.30475 1.59094 1.44694 1.04125 1.08688 1.77996 1.21031 0.86717 0.86387 1.02438 1.21995 0.94481 0.95299 0.86751 0.90070 1.22934 0.81051 0.94924 1.03405 1.87967 1.22361 1.85469 1.33691 1.23005 0.99620 0.94114 0.86356 1.22290 0.80771 0.98413 1.03043 1.47361 1.05570 1.65711 1.19486 1.16151 0.85109 0.79519 0.80265 1.91113 1.13671 1.61806 1.77505 1.45763 1.10887 1.57618 1.24646 1.21544 0.91154 0.96147 0.88121 1.18356 0.93350 0.91808 0.90918 1.21809 0.98522 0.97999 1.00275 1.21804 0.98579 0.99256 0.98893 1.20922 0.92622 1.34152 1.06738 0.92553 1.24863 0.95117 0.95795 0.97635 1.69786 1.11505 1.41545 1.29629 0.86638 0.80984 0.79307 0.80962 1.20263 1.21312 1.20297 0.92886 0.92632 0.91128 0.77342 0.77718 0.92088 0.89574 0.92017 0.87393 0.87544 0.92351 0.90610 0.89163 0.77278 0.93232 0.93013 0.97824 0.89633 0.95462 0.95535 0.89646 0.97779 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.27 10.70 59.84 0.64 1.91 16 2 N -0.75 -9.91 5.72 -72.07 -0.41 -10.33 16 3 C 0.71 11.73 8.25 -86.92 -0.72 11.01 16 4 O -0.61 -12.33 16.33 5.29 0.09 -12.25 16 5 N -0.70 -9.92 3.13 -65.23 -0.20 -10.12 16 6 C 0.16 2.09 4.30 -4.05 -0.02 2.07 16 7 C 0.12 1.25 3.13 -67.43 -0.21 1.04 16 8 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.06 0.50 6.28 37.31 0.23 0.74 16 10 O -0.38 -3.73 10.74 -35.23 -0.38 -4.11 16 11 C 0.05 0.40 6.99 37.31 0.26 0.66 16 12 C 0.08 0.75 6.56 -3.53 -0.02 0.73 16 13 N -0.64 -7.64 3.02 -170.44 -0.51 -8.15 16 14 C 0.69 10.81 7.71 -86.92 -0.67 10.14 16 15 O -0.56 -10.39 10.07 5.29 0.05 -10.34 16 16 N -0.73 -12.10 4.87 -65.22 -0.32 -12.42 16 17 C 0.15 3.11 4.51 -4.04 -0.02 3.09 16 18 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 19 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 20 C -0.13 -2.74 8.08 37.16 0.30 -2.44 16 21 C -0.51 -12.93 8.01 -34.44 -0.28 -13.20 16 22 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 24 N -0.89 -23.05 9.35 55.43 0.52 -22.54 16 25 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.39 4.22 8.84 -40.82 -0.36 3.86 16 33 H 0.39 5.06 7.71 -40.82 -0.31 4.74 16 34 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.09 1.43 6.57 -51.93 -0.34 1.09 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.87 5.80 -51.93 -0.30 0.57 16 42 H 0.39 5.92 3.73 -40.82 -0.15 5.77 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.00 0.05 6.86 -51.93 -0.36 -0.30 16 46 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 2.05 6.07 -51.93 -0.32 1.74 16 50 H 0.00 0.06 6.86 -51.92 -0.36 -0.30 16 51 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -31.70 390.86 -8.94 -40.64 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -8.27 Total: 12.25 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -0.37 Total: 16.06 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.93 Total: -63.56 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.24 Total: -26.70 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.70 -8.94 -40.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001370775725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.628 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds