Wall clock time and date at job start Wed Apr 1 2020 02:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34775 * 120.00379 * 2 1 4 4 O 1.21585 * 119.99578 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00547 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00441 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.47444 * 174.48367 * 6 5 3 8 8 H 1.09006 * 109.67616 * 309.00835 * 7 6 5 9 9 C 1.53298 * 109.68462 * 188.45670 * 7 6 5 10 10 O 1.42956 * 109.22089 * 187.97082 * 9 7 6 11 11 C 1.42968 * 114.16878 * 62.58533 * 10 9 7 12 12 C 1.53294 * 109.21697 * 297.41688 * 11 10 9 13 13 N 1.47145 * 109.68353 * 69.52743 * 7 6 5 14 14 C 1.34775 * 120.98371 * 350.28193 * 13 7 6 15 15 O 1.21586 * 119.99831 * 5.99784 * 14 13 7 16 16 N 1.34775 * 120.00128 * 185.99915 * 14 13 7 17 17 C 1.46506 * 119.99817 * 175.01956 * 16 14 13 18 18 C 1.53002 * 109.47126 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47306 * 300.00439 * 18 17 16 20 20 C 1.52999 * 109.46936 * 60.00509 * 18 17 16 21 21 C 1.50700 * 109.47278 * 180.02562 * 18 17 16 22 22 H 1.08002 * 119.99738 * 0.02562 * 21 18 17 23 23 C 1.37875 * 120.00001 * 180.02562 * 21 18 17 24 24 N 1.31508 * 119.99864 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 119.99722 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47251 * 60.00429 * 25 23 21 27 27 H 1.48504 * 109.46709 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47188 * 299.99737 * 25 23 21 29 29 H 1.09001 * 109.47243 * 299.99458 * 1 2 3 30 30 H 1.09003 * 109.47376 * 59.99822 * 1 2 3 31 31 H 1.09002 * 109.47562 * 179.97438 * 1 2 3 32 32 H 0.97008 * 120.00159 * 180.02562 * 2 1 3 33 33 H 0.97002 * 119.99518 * 0.02562 * 5 3 2 34 34 H 1.08998 * 109.47010 * 54.47943 * 6 5 3 35 35 H 1.09005 * 109.47053 * 294.48426 * 6 5 3 36 36 H 1.08999 * 109.50602 * 307.89858 * 9 7 6 37 37 H 1.09004 * 109.50967 * 68.04618 * 9 7 6 38 38 H 1.08992 * 109.51410 * 177.49301 * 11 10 9 39 39 H 1.08998 * 109.50978 * 57.33301 * 11 10 9 40 40 H 1.09000 * 109.68189 * 292.57474 * 12 11 10 41 41 H 1.08995 * 109.68033 * 172.02761 * 12 11 10 42 42 H 0.96997 * 120.00339 * 355.02004 * 16 14 13 43 43 H 1.08996 * 109.47209 * 300.00175 * 17 16 14 44 44 H 1.08999 * 109.46891 * 60.00520 * 17 16 14 45 45 H 1.08998 * 109.47342 * 59.99882 * 19 18 17 46 46 H 1.09003 * 109.47201 * 179.97438 * 19 18 17 47 47 H 1.08999 * 109.47325 * 299.99717 * 19 18 17 48 48 H 1.08996 * 109.47331 * 59.99728 * 20 18 17 49 49 H 1.08991 * 109.47403 * 180.02562 * 20 18 17 50 50 H 1.09010 * 109.46892 * 300.00120 * 20 18 17 51 51 H 0.97005 * 119.99829 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2192 2.4358 0.0011 7 6 5.7175 2.1596 0.1403 8 1 5.8914 1.4968 0.9880 9 6 6.4683 3.4791 0.3532 10 8 7.8756 3.2344 0.2961 11 6 8.3335 2.7425 -0.9658 12 6 7.6782 1.3853 -1.2462 13 7 6.2223 1.5320 -1.0912 14 6 5.3761 1.1044 -2.0491 15 8 4.1855 1.3318 -1.9542 16 7 5.8497 0.4247 -3.1122 17 6 4.9205 -0.1344 -4.0973 18 6 5.7106 -0.8506 -5.1945 19 6 6.6453 0.1458 -5.8832 20 6 6.5362 -1.9795 -4.5742 21 6 4.7548 -1.4253 -6.2081 22 1 3.6904 -1.2925 -6.0825 23 6 5.2393 -2.1205 -7.2957 24 7 6.5354 -2.2825 -7.4483 25 14 4.0546 -2.8321 -8.5525 26 1 3.2546 -1.7357 -9.1550 27 1 4.8214 -3.5284 -9.6167 28 1 3.1462 -3.7986 -7.8847 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 3.9716 0.3271 0.0005 34 1 3.8835 3.0488 0.8375 35 1 4.0324 2.9637 -0.9342 36 1 6.1897 4.1865 -0.4279 37 1 6.2097 3.8918 1.3284 38 1 9.4168 2.6253 -0.9395 39 1 8.0616 3.4473 -1.7516 40 1 8.0501 0.6448 -0.5380 41 1 7.9092 1.0694 -2.2635 42 1 6.8057 0.3058 -3.2252 43 1 4.2544 -0.8440 -3.6066 44 1 4.3326 0.6698 -4.5396 45 1 7.3366 0.5618 -5.1503 46 1 7.2084 -0.3646 -6.6645 47 1 6.0571 0.9500 -6.3251 48 1 5.8704 -2.6894 -4.0835 49 1 7.0994 -2.4895 -5.3556 50 1 7.2276 -1.5635 -3.8412 51 1 6.8763 -2.7713 -8.2137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001370775725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:22 Heat of formation + Delta-G solvation = -79.620554 kcal Electronic energy + Delta-G solvation = -32526.866424 eV Core-core repulsion = 28269.599737 eV Total energy + Delta-G solvation = -4257.266687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02213 -40.58138 -39.59028 -38.24253 -36.36070 -35.71365 -35.41113 -34.51947 -32.90899 -32.27728 -29.39831 -27.96852 -27.56543 -27.42151 -26.51400 -26.07067 -23.79678 -23.14295 -21.85390 -20.97582 -20.57405 -19.76398 -18.73748 -17.82376 -17.75513 -17.35677 -16.91761 -16.79843 -16.60956 -16.49764 -16.07591 -15.88590 -15.64137 -15.33059 -15.24449 -14.90194 -14.75251 -14.64733 -14.24909 -14.06240 -13.90537 -13.51197 -13.29616 -13.19206 -13.09409 -13.02100 -12.68704 -12.62526 -12.59282 -12.31922 -12.25284 -12.13576 -11.82011 -11.48671 -11.32640 -11.25450 -11.19125 -10.71943 -10.42787 -10.40108 -10.31682 -10.02732 -9.40684 -9.22326 -8.02490 -6.17601 1.43054 1.44821 1.50139 1.56746 1.91050 2.22085 2.41286 2.45044 2.81759 3.00220 3.21447 3.42329 3.69997 3.83019 3.93854 4.06207 4.21105 4.24747 4.42894 4.44423 4.54535 4.54941 4.58666 4.65757 4.68501 4.71655 4.84736 4.87223 4.92680 4.99952 5.04835 5.06657 5.10895 5.20200 5.39333 5.46769 5.59357 5.66815 5.66947 5.67879 5.71634 5.92021 6.05012 6.10147 6.15647 6.22881 6.44056 6.86340 7.04482 7.19313 7.50099 7.67810 7.74121 8.96037 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.003781 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.953447 B = 7403.887346 C = 9892.120167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.747 5.747 3 C 0.699 3.301 4 O -0.652 6.652 5 N -0.692 5.692 6 C 0.162 3.838 7 C 0.127 3.873 8 H 0.103 0.897 9 C 0.059 3.941 10 O -0.382 6.382 11 C 0.047 3.953 12 C 0.075 3.925 13 N -0.633 5.633 14 C 0.687 3.313 15 O -0.595 6.595 16 N -0.728 5.728 17 C 0.176 3.824 18 C 0.052 3.948 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.527 4.527 22 H 0.041 0.959 23 C 0.031 3.969 24 N -0.897 5.897 25 Si 0.941 3.059 26 H -0.280 1.280 27 H -0.283 1.283 28 H -0.276 1.276 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.108 0.892 32 H 0.407 0.593 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.399 0.601 43 H 0.036 0.964 44 H 0.025 0.975 45 H 0.034 0.966 46 H 0.062 0.938 47 H 0.012 0.988 48 H 0.019 0.981 49 H 0.060 0.940 50 H 0.036 0.964 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 4.900 18.005 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.403 5.403 3 C 0.399 3.601 4 O -0.535 6.535 5 N -0.344 5.344 6 C 0.038 3.962 7 C 0.022 3.978 8 H 0.121 0.879 9 C -0.019 4.019 10 O -0.300 6.300 11 C -0.030 4.030 12 C -0.048 4.048 13 N -0.373 5.373 14 C 0.389 3.611 15 O -0.474 6.474 16 N -0.385 5.385 17 C 0.051 3.949 18 C 0.051 3.949 19 C -0.175 4.175 20 C -0.173 4.173 21 C -0.566 4.566 22 H 0.059 0.941 23 C -0.169 4.169 24 N -0.536 5.536 25 Si 0.768 3.232 26 H -0.206 1.206 27 H -0.208 1.208 28 H -0.202 1.202 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.242 0.758 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.238 0.762 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.032 0.968 48 H 0.038 0.962 49 H 0.079 0.921 50 H 0.054 0.946 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.361 5.940 18.077 19.323 hybrid contribution -0.223 -1.303 -1.688 2.144 sum 3.138 4.636 16.390 17.319 Atomic orbital electron populations 1.21433 0.77772 1.03611 1.00780 1.44821 1.08151 1.06932 1.80388 1.16102 0.82449 0.84105 0.77477 1.90814 1.69146 1.32291 1.61292 1.44644 1.03502 1.09348 1.76930 1.20962 0.88614 0.85885 1.00787 1.22097 0.92594 0.96577 0.86483 0.87903 1.22982 0.80705 0.93711 1.04543 1.87976 1.22350 1.85441 1.34232 1.23121 1.01017 0.93125 0.85752 1.22531 0.78822 0.99690 1.03729 1.47357 1.06450 1.64645 1.18842 1.16227 0.85081 0.79288 0.80494 1.91121 1.15312 1.62749 1.78181 1.45445 1.10644 1.58009 1.24444 1.20981 0.90996 0.94738 0.88141 1.18351 0.93199 0.92349 0.90980 1.21641 0.98428 0.97173 1.00275 1.21609 0.98456 0.98537 0.98658 1.21207 0.92610 1.34725 1.08059 0.94055 1.25390 0.96329 0.96211 0.98936 1.69886 1.12201 1.41673 1.29825 0.85890 0.79495 0.78535 0.79306 1.20625 1.20784 1.20173 0.92892 0.94769 0.87311 0.75823 0.76949 0.91192 0.93377 0.92905 0.84944 0.84895 0.93078 0.88696 0.89090 0.76228 0.94527 0.95672 0.94663 0.91920 0.96848 0.96214 0.92086 0.94555 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.41 10.70 127.77 1.37 3.78 16 2 N -0.75 -19.30 5.72 -500.20 -2.86 -22.16 16 3 C 0.70 23.26 8.25 179.05 1.48 24.73 16 4 O -0.65 -27.32 16.33 -3.98 -0.07 -27.38 16 5 N -0.69 -19.29 3.13 -478.55 -1.50 -20.78 16 6 C 0.16 4.20 4.30 86.38 0.37 4.57 16 7 C 0.13 2.38 3.13 44.97 0.14 2.52 16 8 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 9 C 0.06 0.92 6.28 72.08 0.45 1.38 16 10 O -0.38 -6.31 10.74 -148.98 -1.60 -7.91 16 11 C 0.05 0.66 6.99 72.08 0.50 1.16 16 12 C 0.07 1.18 6.56 86.35 0.57 1.75 16 13 N -0.63 -13.77 3.02 -811.41 -2.45 -16.22 16 14 C 0.69 20.93 7.71 179.06 1.38 22.31 16 15 O -0.59 -22.05 10.07 -3.99 -0.04 -22.09 16 16 N -0.73 -23.17 4.87 -478.53 -2.33 -25.49 16 17 C 0.18 7.17 4.51 86.38 0.39 7.56 16 18 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 19 C -0.12 -5.07 8.08 71.98 0.58 -4.49 16 20 C -0.11 -4.80 8.08 71.98 0.58 -4.22 16 21 C -0.53 -27.32 8.01 25.60 0.21 -27.11 16 22 H 0.04 2.21 7.74 -2.91 -0.02 2.18 16 23 C 0.03 1.62 5.15 84.65 0.44 2.05 16 24 N -0.90 -46.70 9.35 21.45 0.20 -46.50 16 25 Si 0.94 42.03 29.54 68.60 2.03 44.06 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.41 8.25 8.84 -92.70 -0.82 7.43 16 33 H 0.40 9.83 7.71 -92.71 -0.72 9.11 16 34 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 35 H 0.05 1.64 6.57 -2.38 -0.02 1.63 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.44 5.80 -2.39 -0.01 1.43 16 42 H 0.40 11.15 3.73 -92.71 -0.35 10.81 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 45 H 0.03 1.25 6.86 -2.39 -0.02 1.24 16 46 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 47 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 2.88 6.07 -2.39 -0.01 2.87 16 50 H 0.04 1.24 6.86 -2.38 -0.02 1.23 16 51 H 0.26 13.12 8.31 -92.70 -0.77 12.35 16 Total: -1.00 -70.54 390.86 -1.10 -71.65 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.92 Total: 34.56 kcal Atomic # 6 Polarization: 29.85 SS G_CDS: 8.43 Total: 38.27 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -8.93 Total: -131.15 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -1.71 Total: -57.38 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -70.54 -1.10 -71.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001370775725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.975 kcal (2) G-P(sol) polarization free energy of solvation -70.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds