Wall clock time and date at job start Wed Apr 1 2020 02:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34780 * 119.99482 * 2 1 4 4 O 1.21586 * 120.00346 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99788 * 179.97438 * 3 2 1 6 6 C 1.46493 * 119.99937 * 180.02562 * 5 3 2 7 7 C 1.53009 * 109.47003 * 185.87626 * 6 5 3 8 8 H 1.08998 * 109.70951 * 51.04647 * 7 6 5 9 9 C 1.53295 * 109.68041 * 171.58165 * 7 6 5 10 10 O 1.42968 * 109.21841 * 172.02393 * 9 7 6 11 11 C 1.42966 * 114.16769 * 297.42028 * 10 9 7 12 12 C 1.53289 * 109.22068 * 62.58253 * 11 10 9 13 13 N 1.47149 * 109.67841 * 290.51016 * 7 6 5 14 14 C 1.34775 * 120.98425 * 10.01611 * 13 7 6 15 15 O 1.21587 * 120.00183 * 353.71732 * 14 13 7 16 16 N 1.34779 * 120.00114 * 173.71150 * 14 13 7 17 17 C 1.46494 * 120.00027 * 174.86093 * 16 14 13 18 18 C 1.53006 * 109.47110 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47144 * 300.00113 * 18 17 16 20 20 C 1.52998 * 109.46601 * 60.00167 * 18 17 16 21 21 C 1.50700 * 109.47065 * 179.97438 * 18 17 16 22 22 H 1.07995 * 120.00266 * 359.10142 * 21 18 17 23 23 C 1.37881 * 119.99927 * 179.08942 * 21 18 17 24 24 N 1.31517 * 119.99607 * 2.85062 * 23 21 18 25 25 Si 1.86790 * 120.00103 * 182.84626 * 23 21 18 26 26 H 1.48498 * 109.47372 * 94.99993 * 25 23 21 27 27 H 1.48498 * 109.47445 * 214.99975 * 25 23 21 28 28 H 1.48508 * 109.47202 * 334.99803 * 25 23 21 29 29 H 1.08995 * 109.47085 * 300.00187 * 1 2 3 30 30 H 1.09000 * 109.46578 * 59.99987 * 1 2 3 31 31 H 1.08997 * 109.46524 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00761 * 180.02562 * 2 1 3 33 33 H 0.97004 * 119.99804 * 0.02562 * 5 3 2 34 34 H 1.08995 * 109.47571 * 65.87463 * 6 5 3 35 35 H 1.08998 * 109.47503 * 305.87113 * 6 5 3 36 36 H 1.09007 * 109.50893 * 52.10812 * 9 7 6 37 37 H 1.08991 * 109.51467 * 291.94854 * 9 7 6 38 38 H 1.09003 * 109.51370 * 302.66003 * 11 10 9 39 39 H 1.09002 * 109.55017 * 182.53324 * 11 10 9 40 40 H 1.08997 * 109.68306 * 187.97468 * 12 11 10 41 41 H 1.09003 * 109.68209 * 67.42129 * 12 11 10 42 42 H 0.97005 * 119.99686 * 354.86027 * 16 14 13 43 43 H 1.08996 * 109.47160 * 300.00097 * 17 16 14 44 44 H 1.09004 * 109.47175 * 60.00399 * 17 16 14 45 45 H 1.09003 * 109.46918 * 64.90314 * 19 18 17 46 46 H 1.09000 * 109.46888 * 184.89591 * 19 18 17 47 47 H 1.08993 * 109.47660 * 304.90099 * 19 18 17 48 48 H 1.08995 * 109.47245 * 60.00572 * 20 18 17 49 49 H 1.09008 * 109.46935 * 179.97438 * 20 18 17 50 50 H 1.09002 * 109.47705 * 299.99797 * 20 18 17 51 51 H 0.96998 * 119.99576 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4867 1.1674 0.0005 6 6 4.2191 2.4361 0.0011 7 6 5.7169 2.1604 -0.1461 8 1 5.8875 1.5015 -0.9974 9 6 6.4666 3.4808 -0.3568 10 8 7.8743 3.2358 -0.3071 11 6 8.3377 2.7386 0.9506 12 6 7.6838 1.3802 1.2282 13 7 6.2271 1.5275 1.0805 14 6 5.3850 1.0906 2.0377 15 8 4.1938 1.3179 1.9495 16 7 5.8631 0.4015 3.0927 17 6 4.9668 0.0243 4.1883 18 6 5.7552 -0.7447 5.2505 19 6 6.3563 -2.0056 4.6261 20 6 6.8785 0.1413 5.7926 21 6 4.8333 -1.1323 6.3778 22 1 3.7927 -0.8451 6.3474 23 6 5.3183 -1.8538 7.4480 24 7 6.5968 -2.1554 7.5123 25 14 4.1597 -2.4026 8.8064 26 1 3.7003 -3.7885 8.5354 27 1 4.8706 -2.3628 10.1096 28 1 2.9869 -1.4928 8.8544 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9501 -0.8399 -0.0004 33 1 3.9717 0.3273 0.0005 34 1 4.0366 2.9606 0.9390 35 1 3.8796 3.0520 -0.8316 36 1 6.1916 4.1849 0.4286 37 1 6.2037 3.8976 -1.3290 38 1 8.0695 3.4400 1.7407 39 1 9.4210 2.6217 0.9198 40 1 7.9193 1.0600 2.2431 41 1 8.0524 0.6428 0.5152 42 1 6.8009 0.1554 3.1266 43 1 4.5382 0.9225 4.6328 44 1 4.1667 -0.6073 3.8021 45 1 7.0885 -1.7228 3.8698 46 1 6.8441 -2.5974 5.4007 47 1 5.5648 -2.5947 4.1632 48 1 6.4503 1.0395 6.2375 49 1 7.4400 -0.4064 6.5497 50 1 7.5455 0.4221 4.9775 51 1 6.9381 -2.6627 8.2654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001370775885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:26 Heat of formation + Delta-G solvation = -56.802032 kcal Electronic energy + Delta-G solvation = -32514.832220 eV Core-core repulsion = 28258.555019 eV Total energy + Delta-G solvation = -4256.277202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93042 -39.36739 -38.53908 -36.71546 -35.14282 -34.64634 -34.18274 -32.97516 -31.81790 -30.74018 -28.42303 -26.99552 -25.79520 -25.64598 -25.18323 -24.80860 -22.91898 -22.08706 -20.64970 -19.76955 -18.93803 -18.52947 -17.62098 -16.82291 -16.33570 -15.99877 -15.92094 -15.60428 -15.40136 -15.26181 -14.95000 -14.64597 -14.42113 -14.14053 -14.08938 -13.59294 -13.44428 -13.14980 -12.93518 -12.69981 -12.59981 -12.32955 -12.21480 -12.14305 -11.73163 -11.57061 -11.44713 -11.24089 -11.02091 -10.91869 -10.72624 -10.47136 -10.40994 -10.22719 -9.95627 -9.70778 -9.41103 -9.16468 -9.06468 -8.85841 -8.85278 -8.44415 -8.27428 -8.03049 -6.06950 -4.16956 2.63089 2.98171 3.24792 3.32622 3.37035 3.45367 3.52248 3.67165 4.15487 4.34713 4.38639 4.60896 4.69833 4.77664 4.82752 4.98139 4.99747 5.19917 5.24489 5.27344 5.40040 5.49156 5.57308 5.60290 5.63873 5.85088 6.04952 6.15694 6.29721 6.41717 6.43863 6.64431 6.71214 6.74875 6.77216 6.83200 6.83926 6.95899 7.02884 7.11777 7.13765 7.31759 7.48737 7.64911 7.95560 8.06708 8.28049 8.29621 8.35359 8.82768 8.93508 8.95321 9.49161 10.94246 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.003757 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.202776 B = 7451.185088 C = 9902.893352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.755 5.755 3 C 0.711 3.289 4 O -0.606 6.606 5 N -0.701 5.701 6 C 0.159 3.841 7 C 0.119 3.881 8 H 0.081 0.919 9 C 0.056 3.944 10 O -0.377 6.377 11 C 0.047 3.953 12 C 0.078 3.922 13 N -0.640 5.640 14 C 0.688 3.312 15 O -0.564 6.564 16 N -0.732 5.732 17 C 0.153 3.847 18 C 0.056 3.944 19 C -0.128 4.128 20 C -0.129 4.129 21 C -0.504 4.504 22 H 0.057 0.943 23 C 0.066 3.934 24 N -0.886 5.886 25 Si 0.893 3.107 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.394 0.606 33 H 0.389 0.611 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.391 0.609 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.005 0.995 46 H 0.085 0.915 47 H 0.024 0.976 48 H 0.026 0.974 49 H 0.087 0.913 50 H 0.002 0.998 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 4.783 -16.725 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.410 5.410 3 C 0.411 3.589 4 O -0.486 6.486 5 N -0.355 5.355 6 C 0.034 3.966 7 C 0.015 3.985 8 H 0.099 0.901 9 C -0.023 4.023 10 O -0.295 6.295 11 C -0.030 4.030 12 C -0.046 4.046 13 N -0.381 5.381 14 C 0.389 3.611 15 O -0.441 6.441 16 N -0.389 5.389 17 C 0.030 3.970 18 C 0.055 3.945 19 C -0.186 4.186 20 C -0.186 4.186 21 C -0.543 4.543 22 H 0.075 0.925 23 C -0.135 4.135 24 N -0.524 5.524 25 Si 0.721 3.279 26 H -0.208 1.208 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.226 0.774 33 H 0.223 0.777 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.227 0.773 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.104 0.896 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.105 0.895 50 H 0.021 0.979 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.490 5.881 -16.750 17.815 hybrid contribution 0.289 -1.462 1.210 1.919 sum 1.779 4.419 -15.540 16.254 Atomic orbital electron populations 1.21289 0.78775 1.01426 1.01849 1.44824 1.07382 1.07287 1.81520 1.15757 0.81786 0.83883 0.77478 1.90859 1.68146 1.30467 1.59085 1.44702 1.04119 1.08697 1.77960 1.21034 0.86721 0.86353 1.02462 1.21994 0.94438 0.95253 0.86853 0.90125 1.22929 0.81038 0.94897 1.03406 1.87966 1.22311 1.85289 1.33945 1.22992 0.99538 0.94053 0.86447 1.22299 0.80725 0.98441 1.03124 1.47368 1.05571 1.65100 1.20093 1.16156 0.85114 0.79697 0.80115 1.91116 1.13441 1.62581 1.76951 1.45747 1.13720 1.58351 1.21037 1.21558 0.91846 0.98292 0.85297 1.18364 0.93260 0.91421 0.91431 1.21793 0.98035 0.99987 0.98787 1.21828 0.98445 0.98713 0.99647 1.20980 0.95430 1.34413 1.03474 0.92467 1.24870 0.95058 0.95710 0.97845 1.69801 1.12263 1.39449 1.30927 0.86563 0.81011 0.79024 0.81331 1.20762 1.21249 1.19854 0.92617 0.92888 0.91134 0.77353 0.77715 0.89587 0.92060 0.92001 0.87401 0.92326 0.87561 0.89050 0.90705 0.77287 0.93179 0.93047 0.97637 0.89637 0.95670 0.95506 0.89479 0.97880 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.26 10.70 59.85 0.64 1.90 16 2 N -0.75 -9.86 5.72 -72.07 -0.41 -10.28 16 3 C 0.71 11.69 8.26 -86.91 -0.72 10.97 16 4 O -0.61 -12.31 16.33 5.29 0.09 -12.23 16 5 N -0.70 -9.89 3.12 -65.23 -0.20 -10.09 16 6 C 0.16 2.09 4.31 -4.04 -0.02 2.07 16 7 C 0.12 1.25 3.13 -67.42 -0.21 1.04 16 8 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 9 C 0.06 0.51 6.28 37.31 0.23 0.74 16 10 O -0.38 -3.75 10.74 -35.23 -0.38 -4.13 16 11 C 0.05 0.41 6.98 37.31 0.26 0.67 16 12 C 0.08 0.74 6.50 -3.53 -0.02 0.72 16 13 N -0.64 -7.63 3.02 -170.43 -0.51 -8.14 16 14 C 0.69 10.78 7.70 -86.92 -0.67 10.11 16 15 O -0.56 -10.37 10.07 5.29 0.05 -10.32 16 16 N -0.73 -12.07 4.84 -65.23 -0.32 -12.38 16 17 C 0.15 3.11 4.51 -4.04 -0.02 3.09 16 18 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 19 C -0.13 -2.76 8.06 37.16 0.30 -2.46 16 20 C -0.13 -2.79 8.09 37.16 0.30 -2.49 16 21 C -0.50 -12.91 8.01 -34.44 -0.28 -13.18 16 22 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 23 C 0.07 1.71 5.13 -17.82 -0.09 1.62 16 24 N -0.89 -23.04 9.34 55.43 0.52 -22.52 16 25 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.39 4.18 8.84 -40.82 -0.36 3.82 16 33 H 0.39 5.03 7.68 -40.82 -0.31 4.72 16 34 H 0.09 1.43 6.58 -51.93 -0.34 1.09 16 35 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.89 5.92 -51.93 -0.31 0.58 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.39 5.91 3.90 -40.82 -0.16 5.75 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.00 0.09 7.01 -51.93 -0.36 -0.28 16 46 H 0.08 2.07 5.99 -51.93 -0.31 1.76 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 2.11 6.03 -51.92 -0.31 1.80 16 50 H 0.00 0.04 6.86 -51.93 -0.36 -0.31 16 51 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -31.70 391.03 -8.95 -40.65 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -8.29 Total: 12.16 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -0.37 Total: 15.98 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.93 Total: -63.42 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.24 Total: -26.68 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.70 -8.95 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001370775885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.151 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds