Wall clock time and date at job start Wed Apr 1 2020 02:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34780 * 119.99482 * 2 1 4 4 O 1.21586 * 120.00346 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99788 * 179.97438 * 3 2 1 6 6 C 1.46493 * 119.99937 * 180.02562 * 5 3 2 7 7 C 1.53009 * 109.47003 * 185.87626 * 6 5 3 8 8 H 1.08998 * 109.70951 * 51.04647 * 7 6 5 9 9 C 1.53295 * 109.68041 * 171.58165 * 7 6 5 10 10 O 1.42968 * 109.21841 * 172.02393 * 9 7 6 11 11 C 1.42966 * 114.16769 * 297.42028 * 10 9 7 12 12 C 1.53289 * 109.22068 * 62.58253 * 11 10 9 13 13 N 1.47149 * 109.67841 * 290.51016 * 7 6 5 14 14 C 1.34775 * 120.98425 * 10.01611 * 13 7 6 15 15 O 1.21587 * 120.00183 * 353.71732 * 14 13 7 16 16 N 1.34779 * 120.00114 * 173.71150 * 14 13 7 17 17 C 1.46494 * 120.00027 * 174.86093 * 16 14 13 18 18 C 1.53006 * 109.47110 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47144 * 300.00113 * 18 17 16 20 20 C 1.52998 * 109.46601 * 60.00167 * 18 17 16 21 21 C 1.50700 * 109.47065 * 179.97438 * 18 17 16 22 22 H 1.07995 * 120.00266 * 359.10142 * 21 18 17 23 23 C 1.37881 * 119.99927 * 179.08942 * 21 18 17 24 24 N 1.31517 * 119.99607 * 2.85062 * 23 21 18 25 25 Si 1.86790 * 120.00103 * 182.84626 * 23 21 18 26 26 H 1.48498 * 109.47372 * 94.99993 * 25 23 21 27 27 H 1.48498 * 109.47445 * 214.99975 * 25 23 21 28 28 H 1.48508 * 109.47202 * 334.99803 * 25 23 21 29 29 H 1.08995 * 109.47085 * 300.00187 * 1 2 3 30 30 H 1.09000 * 109.46578 * 59.99987 * 1 2 3 31 31 H 1.08997 * 109.46524 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00761 * 180.02562 * 2 1 3 33 33 H 0.97004 * 119.99804 * 0.02562 * 5 3 2 34 34 H 1.08995 * 109.47571 * 65.87463 * 6 5 3 35 35 H 1.08998 * 109.47503 * 305.87113 * 6 5 3 36 36 H 1.09007 * 109.50893 * 52.10812 * 9 7 6 37 37 H 1.08991 * 109.51467 * 291.94854 * 9 7 6 38 38 H 1.09003 * 109.51370 * 302.66003 * 11 10 9 39 39 H 1.09002 * 109.55017 * 182.53324 * 11 10 9 40 40 H 1.08997 * 109.68306 * 187.97468 * 12 11 10 41 41 H 1.09003 * 109.68209 * 67.42129 * 12 11 10 42 42 H 0.97005 * 119.99686 * 354.86027 * 16 14 13 43 43 H 1.08996 * 109.47160 * 300.00097 * 17 16 14 44 44 H 1.09004 * 109.47175 * 60.00399 * 17 16 14 45 45 H 1.09003 * 109.46918 * 64.90314 * 19 18 17 46 46 H 1.09000 * 109.46888 * 184.89591 * 19 18 17 47 47 H 1.08993 * 109.47660 * 304.90099 * 19 18 17 48 48 H 1.08995 * 109.47245 * 60.00572 * 20 18 17 49 49 H 1.09008 * 109.46935 * 179.97438 * 20 18 17 50 50 H 1.09002 * 109.47705 * 299.99797 * 20 18 17 51 51 H 0.96998 * 119.99576 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4867 1.1674 0.0005 6 6 4.2191 2.4361 0.0011 7 6 5.7169 2.1604 -0.1461 8 1 5.8875 1.5015 -0.9974 9 6 6.4666 3.4808 -0.3568 10 8 7.8743 3.2358 -0.3071 11 6 8.3377 2.7386 0.9506 12 6 7.6838 1.3802 1.2282 13 7 6.2271 1.5275 1.0805 14 6 5.3850 1.0906 2.0377 15 8 4.1938 1.3179 1.9495 16 7 5.8631 0.4015 3.0927 17 6 4.9668 0.0243 4.1883 18 6 5.7552 -0.7447 5.2505 19 6 6.3563 -2.0056 4.6261 20 6 6.8785 0.1413 5.7926 21 6 4.8333 -1.1323 6.3778 22 1 3.7927 -0.8451 6.3474 23 6 5.3183 -1.8538 7.4480 24 7 6.5968 -2.1554 7.5123 25 14 4.1597 -2.4026 8.8064 26 1 3.7003 -3.7885 8.5354 27 1 4.8706 -2.3628 10.1096 28 1 2.9869 -1.4928 8.8544 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9501 -0.8399 -0.0004 33 1 3.9717 0.3273 0.0005 34 1 4.0366 2.9606 0.9390 35 1 3.8796 3.0520 -0.8316 36 1 6.1916 4.1849 0.4286 37 1 6.2037 3.8976 -1.3290 38 1 8.0695 3.4400 1.7407 39 1 9.4210 2.6217 0.9198 40 1 7.9193 1.0600 2.2431 41 1 8.0524 0.6428 0.5152 42 1 6.8009 0.1554 3.1266 43 1 4.5382 0.9225 4.6328 44 1 4.1667 -0.6073 3.8021 45 1 7.0885 -1.7228 3.8698 46 1 6.8441 -2.5974 5.4007 47 1 5.5648 -2.5947 4.1632 48 1 6.4503 1.0395 6.2375 49 1 7.4400 -0.4064 6.5497 50 1 7.5455 0.4221 4.9775 51 1 6.9381 -2.6627 8.2654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001370775885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:25 Heat of formation + Delta-G solvation = -80.169678 kcal Electronic energy + Delta-G solvation = -32515.845518 eV Core-core repulsion = 28258.555019 eV Total energy + Delta-G solvation = -4257.290499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.01943 -40.58128 -39.58969 -38.24450 -36.36113 -35.71127 -35.41311 -34.52148 -32.90773 -32.28074 -29.39864 -27.97023 -27.56363 -27.42191 -26.51065 -26.07111 -23.79583 -23.14919 -21.85599 -20.96636 -20.58300 -19.76568 -18.73527 -17.82626 -17.75653 -17.36223 -16.88223 -16.78459 -16.61023 -16.52427 -16.09570 -15.88044 -15.64260 -15.31555 -15.26056 -14.90105 -14.75549 -14.67334 -14.25435 -14.07333 -13.86902 -13.51212 -13.29876 -13.20801 -13.09112 -13.02249 -12.69367 -12.60092 -12.59179 -12.31858 -12.26390 -12.13688 -11.81744 -11.48801 -11.32887 -11.25245 -11.19174 -10.72273 -10.43070 -10.39292 -10.31376 -10.02528 -9.41648 -9.22338 -8.03069 -6.18161 1.40814 1.44638 1.51554 1.57049 1.90180 2.22591 2.41368 2.44756 2.81839 3.00803 3.20658 3.42330 3.70146 3.83327 3.93804 4.06226 4.22048 4.24693 4.42768 4.43982 4.54229 4.54903 4.58573 4.65697 4.68495 4.71671 4.84613 4.87095 4.92666 4.99858 5.05366 5.06399 5.11126 5.20344 5.39626 5.46724 5.59189 5.66135 5.66973 5.67767 5.71386 5.92444 6.05000 6.10134 6.16466 6.22729 6.44460 6.86082 7.04615 7.19293 7.49628 7.67811 7.74001 8.95474 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.003757 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.202776 B = 7451.185088 C = 9902.893352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.747 5.747 3 C 0.699 3.301 4 O -0.652 6.652 5 N -0.691 5.691 6 C 0.162 3.838 7 C 0.127 3.873 8 H 0.103 0.897 9 C 0.059 3.941 10 O -0.382 6.382 11 C 0.048 3.952 12 C 0.074 3.926 13 N -0.633 5.633 14 C 0.687 3.313 15 O -0.595 6.595 16 N -0.727 5.727 17 C 0.176 3.824 18 C 0.052 3.948 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.526 4.526 22 H 0.040 0.960 23 C 0.031 3.969 24 N -0.897 5.897 25 Si 0.941 3.059 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.279 1.279 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.407 0.593 33 H 0.396 0.604 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.133 0.867 38 H 0.050 0.950 39 H 0.133 0.867 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.400 0.600 43 H 0.025 0.975 44 H 0.034 0.966 45 H 0.036 0.964 46 H 0.060 0.940 47 H 0.019 0.981 48 H 0.013 0.987 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 4.224 -18.398 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.403 5.403 3 C 0.398 3.602 4 O -0.535 6.535 5 N -0.344 5.344 6 C 0.038 3.962 7 C 0.022 3.978 8 H 0.121 0.879 9 C -0.019 4.019 10 O -0.300 6.300 11 C -0.030 4.030 12 C -0.048 4.048 13 N -0.373 5.373 14 C 0.389 3.611 15 O -0.474 6.474 16 N -0.384 5.384 17 C 0.051 3.949 18 C 0.051 3.949 19 C -0.174 4.174 20 C -0.175 4.175 21 C -0.565 4.565 22 H 0.059 0.941 23 C -0.169 4.169 24 N -0.536 5.536 25 Si 0.768 3.232 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.204 1.204 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.242 0.758 33 H 0.231 0.769 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.151 0.849 38 H 0.068 0.932 39 H 0.151 0.849 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.238 0.762 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.038 0.962 48 H 0.032 0.968 49 H 0.082 0.918 50 H 0.054 0.946 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.161 5.291 -18.454 19.456 hybrid contribution -0.201 -1.264 1.708 2.135 sum 2.960 4.027 -16.745 17.475 Atomic orbital electron populations 1.21435 0.77766 1.03618 1.00778 1.44820 1.08150 1.06923 1.80391 1.16113 0.82456 0.84114 0.77492 1.90815 1.69147 1.32297 1.61290 1.44649 1.03496 1.09349 1.76895 1.20961 0.88632 0.85876 1.00772 1.22096 0.92536 0.96504 0.86616 0.87891 1.22979 0.80700 0.93713 1.04525 1.87975 1.22306 1.85266 1.34450 1.23107 1.00947 0.93090 0.85827 1.22538 0.78776 0.99692 1.03817 1.47363 1.06453 1.64014 1.19471 1.16234 0.85069 0.79452 0.80367 1.91122 1.15088 1.63460 1.77687 1.45416 1.13532 1.58940 1.20541 1.20988 0.91636 0.96499 0.85751 1.18355 0.93132 0.92205 0.91199 1.21605 0.98237 0.98930 0.98603 1.21654 0.98319 0.97555 0.99992 1.21245 0.95335 1.34858 1.05045 0.94141 1.25388 0.96201 0.95910 0.99379 1.69896 1.12907 1.39516 1.31233 0.85813 0.79410 0.78511 0.79465 1.20396 1.20873 1.20399 0.94767 0.92909 0.87289 0.75811 0.76924 0.93434 0.91177 0.92950 0.84931 0.93182 0.84908 0.89051 0.88643 0.76201 0.95633 0.94715 0.94533 0.92151 0.96202 0.96781 0.91813 0.94588 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.40 10.70 127.77 1.37 3.76 16 2 N -0.75 -19.17 5.72 -500.18 -2.86 -22.03 16 3 C 0.70 23.18 8.26 179.05 1.48 24.66 16 4 O -0.65 -27.29 16.33 -3.99 -0.07 -27.35 16 5 N -0.69 -19.22 3.12 -478.53 -1.49 -20.71 16 6 C 0.16 4.21 4.31 86.38 0.37 4.58 16 7 C 0.13 2.38 3.13 44.97 0.14 2.52 16 8 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 9 C 0.06 0.93 6.28 72.08 0.45 1.39 16 10 O -0.38 -6.36 10.74 -148.98 -1.60 -7.96 16 11 C 0.05 0.67 6.98 72.08 0.50 1.18 16 12 C 0.07 1.18 6.50 86.35 0.56 1.74 16 13 N -0.63 -13.76 3.02 -811.38 -2.45 -16.21 16 14 C 0.69 20.90 7.70 179.05 1.38 22.28 16 15 O -0.59 -22.03 10.07 -3.99 -0.04 -22.07 16 16 N -0.73 -23.09 4.84 -478.53 -2.32 -25.41 16 17 C 0.18 7.20 4.51 86.38 0.39 7.58 16 18 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 19 C -0.12 -4.87 8.06 71.98 0.58 -4.29 16 20 C -0.12 -5.03 8.09 71.98 0.58 -4.45 16 21 C -0.53 -27.33 8.01 25.60 0.21 -27.13 16 22 H 0.04 2.18 7.74 -2.91 -0.02 2.16 16 23 C 0.03 1.61 5.13 84.66 0.43 2.04 16 24 N -0.90 -46.65 9.34 21.45 0.20 -46.45 16 25 Si 0.94 42.12 29.54 68.60 2.03 44.15 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.41 8.15 8.84 -92.71 -0.82 7.33 16 33 H 0.40 9.77 7.68 -92.71 -0.71 9.06 16 34 H 0.05 1.63 6.58 -2.39 -0.02 1.61 16 35 H 0.07 1.69 8.11 -2.39 -0.02 1.67 16 36 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.47 5.92 -2.39 -0.01 1.45 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.40 11.11 3.90 -92.70 -0.36 10.75 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.04 1.27 7.01 -2.39 -0.02 1.25 16 46 H 0.06 2.87 5.99 -2.39 -0.01 2.86 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 3.06 6.03 -2.38 -0.01 3.04 16 50 H 0.04 1.26 6.86 -2.39 -0.02 1.24 16 51 H 0.26 13.06 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -70.65 391.03 -1.11 -71.76 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.93 Total: 34.15 kcal Atomic # 6 Polarization: 29.71 SS G_CDS: 8.42 Total: 38.13 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -8.92 Total: -130.81 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -1.71 Total: -57.38 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -70.65 -1.11 -71.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001370775885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.410 kcal (2) G-P(sol) polarization free energy of solvation -70.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds