Wall clock time and date at job start Wed Apr 1 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47460 * 2 1 4 4 C 1.52997 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46673 * 305.00435 * 4 3 2 6 6 N 1.46500 * 109.46775 * 64.99874 * 4 3 2 7 7 C 1.34777 * 120.00235 * 59.72698 * 6 4 3 8 8 N 1.34771 * 120.00581 * 180.27117 * 7 6 4 9 9 O 1.21590 * 119.99295 * 0.27505 * 7 6 4 10 10 C 1.50692 * 109.47292 * 184.99953 * 4 3 2 11 11 O 1.21278 * 120.00323 * 259.99805 * 10 4 3 12 12 N 1.34778 * 119.99671 * 80.00198 * 10 4 3 13 13 C 1.46512 * 119.99646 * 179.97438 * 12 10 4 14 14 C 1.52998 * 109.46773 * 176.05119 * 13 12 10 15 15 N 1.46503 * 109.54719 * 54.58434 * 14 13 12 16 16 C 1.36932 * 120.00149 * 62.69248 * 15 14 13 17 17 H 1.08005 * 119.99774 * 353.59792 * 16 15 14 18 18 C 1.38807 * 120.00207 * 173.59004 * 16 15 14 19 19 N 1.31617 * 120.00091 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99965 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47093 * 89.99523 * 20 18 16 22 22 H 1.48495 * 109.47383 * 209.99445 * 20 18 16 23 23 H 1.48499 * 109.47017 * 329.99945 * 20 18 16 24 24 C 1.53182 * 109.54523 * 294.40265 * 14 13 12 25 25 C 1.53097 * 109.15787 * 183.24254 * 24 14 13 26 26 O 1.42910 * 109.48943 * 57.47656 * 25 24 14 27 27 C 1.42905 * 114.09246 * 298.89158 * 26 25 24 28 28 C 1.53089 * 109.41825 * 61.15568 * 27 26 25 29 29 H 1.09003 * 109.46851 * 60.00002 * 1 2 3 30 30 H 1.09000 * 109.47646 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47541 * 300.00549 * 1 2 3 32 32 H 1.09004 * 109.46930 * 239.99531 * 2 1 3 33 33 H 1.09001 * 109.46374 * 120.00214 * 2 1 3 34 34 H 1.09004 * 109.47034 * 59.99475 * 3 2 1 35 35 H 1.08995 * 109.47231 * 300.00171 * 3 2 1 36 36 H 0.96999 * 120.00233 * 240.00178 * 6 4 3 37 37 H 0.96998 * 119.99354 * 0.02562 * 8 7 6 38 38 H 0.96997 * 120.00379 * 179.97438 * 8 7 6 39 39 H 0.96999 * 120.00474 * 0.02562 * 12 10 4 40 40 H 1.08995 * 109.46708 * 296.04831 * 13 12 10 41 41 H 1.08995 * 109.47249 * 56.05313 * 13 12 10 42 42 H 0.97004 * 119.99487 * 242.70345 * 15 14 13 43 43 H 0.97007 * 119.99970 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.52229 * 303.06548 * 24 14 13 45 45 H 1.09004 * 109.52093 * 63.24829 * 24 14 13 46 46 H 1.09003 * 109.40786 * 297.49602 * 25 24 14 47 47 H 1.09004 * 109.49550 * 177.50842 * 25 24 14 48 48 H 1.08998 * 109.47851 * 301.16733 * 27 26 25 49 49 H 1.09001 * 109.48500 * 181.14508 * 27 26 25 50 50 H 1.08998 * 109.51956 * 182.48434 * 28 27 26 51 51 H 1.08999 * 109.57351 * 62.32731 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8530 0.8427 6 7 4.0588 0.8585 -1.2509 7 6 3.7292 1.4205 -2.4307 8 7 4.1743 0.8801 -3.5824 9 8 3.0302 2.4150 -2.4560 10 6 4.0723 2.8578 0.1245 11 8 4.4469 3.4568 -0.8613 12 7 4.1054 3.4579 1.3308 13 6 4.5943 4.8338 1.4512 14 6 4.4358 5.3065 2.8977 15 7 5.1017 4.3618 3.7979 16 6 6.4545 4.1690 3.7091 17 1 7.0148 4.6330 2.9108 18 6 7.1057 3.3776 4.6452 19 7 8.4061 3.1928 4.5602 20 14 6.1365 2.5747 6.0256 21 1 5.6670 1.2358 5.5871 22 1 7.0060 2.4274 7.2203 23 1 4.9660 3.4225 6.3667 24 6 2.9472 5.3876 3.2501 25 6 2.7966 5.9381 4.6707 26 8 3.4296 7.2165 4.7564 27 6 4.8322 7.1923 4.4839 28 6 5.0647 6.6943 3.0551 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 4.6164 0.0651 -1.2307 37 1 4.7316 0.0865 -3.5620 38 1 3.9367 1.2844 -4.4315 39 1 3.8062 2.9788 2.1193 40 1 5.6466 4.8713 1.1700 41 1 4.0185 5.4831 0.7917 42 1 4.5843 3.8727 4.4566 43 1 8.8611 2.6393 5.2141 44 1 2.4424 6.0513 2.5481 45 1 2.5050 4.3929 3.1947 46 1 3.2653 5.2524 5.3765 47 1 1.7382 6.0398 4.9111 48 1 5.3276 6.5230 5.1873 49 1 5.2405 8.1974 4.5896 50 1 6.1354 6.6332 2.8603 51 1 4.6047 7.3850 2.3483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484191877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:55 Heat of formation + Delta-G solvation = -104.841387 kcal Electronic energy + Delta-G solvation = -32533.458750 eV Core-core repulsion = 28275.098406 eV Total energy + Delta-G solvation = -4258.360344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.42796 -39.50481 -38.32095 -36.04814 -35.63935 -33.78879 -33.43162 -32.90842 -32.17586 -30.72454 -29.87256 -29.18274 -26.83768 -24.57356 -23.84363 -23.00942 -22.17884 -21.76258 -20.74292 -19.62026 -18.61711 -18.47548 -17.87904 -17.42603 -16.59976 -15.79261 -15.63912 -15.48344 -15.38836 -14.90201 -14.71322 -14.48805 -14.36839 -14.25753 -14.01742 -13.78703 -13.41274 -13.32881 -13.10054 -12.68835 -12.48101 -12.43138 -12.12252 -11.92540 -11.88914 -11.54196 -11.28866 -11.16670 -11.04932 -11.00606 -10.87873 -10.84217 -10.46297 -10.08596 -9.96732 -9.83229 -9.66028 -9.61473 -9.49286 -9.27531 -8.88735 -8.66371 -8.36549 -7.41883 -5.86803 -3.25322 2.81386 3.21981 3.24630 3.27254 3.36055 3.43658 3.76399 4.29303 4.46991 4.50521 4.79048 4.89171 4.93888 5.00666 5.12273 5.12608 5.20189 5.31099 5.37104 5.46775 5.47966 5.57301 5.57839 5.66631 5.73184 5.78708 5.90241 5.98617 6.00525 6.05963 6.09784 6.20339 6.23881 6.28628 6.32091 6.48271 6.50871 6.56849 6.66415 6.72846 6.73499 6.98188 7.06171 7.63047 7.87570 8.04081 8.08054 8.31054 8.75044 8.88566 9.07166 9.78817 9.97639 11.30869 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003709 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.945082 B = 7546.530260 C = 8017.405689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.133 4.133 4 C 0.153 3.847 5 H 0.107 0.893 6 N -0.731 5.731 7 C 0.711 3.289 8 N -0.873 5.873 9 O -0.565 6.565 10 C 0.497 3.503 11 O -0.518 6.518 12 N -0.706 5.706 13 C 0.124 3.876 14 C 0.196 3.804 15 N -0.738 5.738 16 C -0.239 4.239 17 H 0.092 0.908 18 C 0.011 3.989 19 N -0.929 5.929 20 Si 0.877 3.123 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.154 4.154 25 C 0.065 3.935 26 O -0.391 6.391 27 C 0.069 3.931 28 C -0.151 4.151 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.398 0.602 37 H 0.392 0.608 38 H 0.411 0.589 39 H 0.396 0.604 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.060 -6.561 -8.080 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.172 4.172 4 C 0.043 3.957 5 H 0.125 0.875 6 N -0.387 5.387 7 C 0.410 3.590 8 N -0.442 5.442 9 O -0.439 6.439 10 C 0.280 3.720 11 O -0.393 6.393 12 N -0.358 5.358 13 C -0.003 4.003 14 C 0.104 3.896 15 N -0.382 5.382 16 C -0.369 4.369 17 H 0.109 0.891 18 C -0.185 4.185 19 N -0.576 5.576 20 Si 0.707 3.293 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.192 4.192 25 C -0.012 4.012 26 O -0.311 6.311 27 C -0.007 4.007 28 C -0.192 4.192 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.231 0.769 37 H 0.219 0.781 38 H 0.243 0.757 39 H 0.231 0.769 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.101 0.899 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.232 -5.056 -8.641 16.593 hybrid contribution 0.189 -1.872 1.055 2.157 sum -13.044 -6.928 -7.586 16.603 Atomic orbital electron populations 1.21745 0.95816 1.01323 1.01939 1.21465 0.95890 0.96351 1.01818 1.22008 0.92560 0.97931 1.04697 1.20719 0.95497 0.93063 0.86429 0.87467 1.44657 1.57111 1.32718 1.04220 1.15822 0.80379 0.82332 0.80494 1.42968 1.58962 1.34526 1.07716 1.90950 1.41893 1.25233 1.85860 1.20672 0.79240 0.88572 0.83546 1.90723 1.46643 1.65245 1.36675 1.45678 1.65651 1.15778 1.08680 1.21710 0.99580 0.81703 0.97258 1.19797 0.90394 0.89996 0.89367 1.42843 1.06315 1.48275 1.40737 1.18913 0.81968 1.26059 1.09933 0.89058 1.24654 0.95158 1.00493 0.98237 1.69693 1.07146 1.42959 1.37796 0.86698 0.79576 0.79605 0.83410 1.21215 1.21849 1.20269 1.22399 0.96970 1.01546 0.98309 1.22460 0.97183 0.85779 0.95755 1.87819 1.22648 1.29513 1.91071 1.22472 0.80957 1.00993 0.96289 1.22421 1.02876 0.96576 0.97282 0.92786 0.92951 0.92662 0.92119 0.92053 0.90855 0.88723 0.76889 0.78114 0.75714 0.76919 0.91507 0.92679 0.80634 0.93042 0.90704 0.91248 0.93050 0.89868 0.91631 0.90018 0.89853 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.09 5.82 -26.73 -0.16 -1.24 16 3 C -0.13 -1.56 4.54 -26.73 -0.12 -1.68 16 4 C 0.15 1.97 3.01 -69.09 -0.21 1.76 16 5 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 6 N -0.73 -8.59 4.65 -59.82 -0.28 -8.87 16 7 C 0.71 9.95 7.60 -86.92 -0.66 9.29 16 8 N -0.87 -8.18 8.88 27.63 0.25 -7.94 16 9 O -0.56 -10.55 13.04 -18.16 -0.24 -10.79 16 10 C 0.50 8.62 6.82 -10.99 -0.07 8.54 16 11 O -0.52 -11.18 13.70 -17.89 -0.25 -11.43 16 12 N -0.71 -11.68 5.13 -60.29 -0.31 -11.99 16 13 C 0.12 2.23 4.38 -4.04 -0.02 2.21 16 14 C 0.20 3.36 0.41 -131.63 -0.05 3.30 16 15 N -0.74 -14.75 3.38 -47.06 -0.16 -14.91 16 16 C -0.24 -5.92 9.15 -15.06 -0.14 -6.06 16 17 H 0.09 2.53 7.02 -52.48 -0.37 2.16 16 18 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -27.38 13.97 55.49 0.78 -26.61 16 20 Si 0.88 20.17 27.67 -169.99 -4.70 15.47 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.28 -5.95 6.62 56.52 0.37 -5.57 16 24 C -0.15 -2.23 4.80 -26.59 -0.13 -2.36 16 25 C 0.07 0.97 6.67 37.21 0.25 1.22 16 26 O -0.39 -6.58 10.77 -35.23 -0.38 -6.96 16 27 C 0.07 1.18 6.68 37.20 0.25 1.43 16 28 C -0.15 -2.61 4.78 -26.59 -0.13 -2.73 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 7.75 -51.93 -0.40 0.16 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.40 6.03 -51.93 -0.31 1.08 16 36 H 0.40 3.36 8.84 -40.82 -0.36 3.00 16 37 H 0.39 2.34 8.84 -40.82 -0.36 1.98 16 38 H 0.41 3.52 8.93 -40.82 -0.36 3.16 16 39 H 0.40 5.97 7.44 -40.82 -0.30 5.67 16 40 H 0.07 1.41 7.49 -51.93 -0.39 1.02 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.36 7.11 4.77 -40.82 -0.19 6.92 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.90 7.41 -51.93 -0.38 0.52 16 46 H 0.05 0.82 7.16 -51.93 -0.37 0.45 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 1.27 7.75 -51.93 -0.40 0.86 16 49 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.08 1.59 7.17 -51.93 -0.37 1.21 16 51 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -35.14 396.56 -8.63 -43.77 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -8.40 Total: 21.34 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -0.92 Total: 12.93 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: 0.27 Total: -70.32 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.86 Total: -29.17 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.70 Total: 15.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.14 -8.63 -43.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484191877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.069 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds