Wall clock time and date at job start Wed Apr 1 2020 02:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47460 * 2 1 4 4 C 1.52997 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46673 * 305.00435 * 4 3 2 6 6 N 1.46500 * 109.46775 * 64.99874 * 4 3 2 7 7 C 1.34777 * 120.00235 * 59.72698 * 6 4 3 8 8 N 1.34771 * 120.00581 * 180.27117 * 7 6 4 9 9 O 1.21590 * 119.99295 * 0.27505 * 7 6 4 10 10 C 1.50692 * 109.47292 * 184.99953 * 4 3 2 11 11 O 1.21278 * 120.00323 * 259.99805 * 10 4 3 12 12 N 1.34778 * 119.99671 * 80.00198 * 10 4 3 13 13 C 1.46512 * 119.99646 * 179.97438 * 12 10 4 14 14 C 1.52998 * 109.46773 * 176.05119 * 13 12 10 15 15 N 1.46503 * 109.54719 * 54.58434 * 14 13 12 16 16 C 1.36932 * 120.00149 * 62.69248 * 15 14 13 17 17 H 1.08005 * 119.99774 * 353.59792 * 16 15 14 18 18 C 1.38807 * 120.00207 * 173.59004 * 16 15 14 19 19 N 1.31617 * 120.00091 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99965 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47093 * 89.99523 * 20 18 16 22 22 H 1.48495 * 109.47383 * 209.99445 * 20 18 16 23 23 H 1.48499 * 109.47017 * 329.99945 * 20 18 16 24 24 C 1.53182 * 109.54523 * 294.40265 * 14 13 12 25 25 C 1.53097 * 109.15787 * 183.24254 * 24 14 13 26 26 O 1.42910 * 109.48943 * 57.47656 * 25 24 14 27 27 C 1.42905 * 114.09246 * 298.89158 * 26 25 24 28 28 C 1.53089 * 109.41825 * 61.15568 * 27 26 25 29 29 H 1.09003 * 109.46851 * 60.00002 * 1 2 3 30 30 H 1.09000 * 109.47646 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47541 * 300.00549 * 1 2 3 32 32 H 1.09004 * 109.46930 * 239.99531 * 2 1 3 33 33 H 1.09001 * 109.46374 * 120.00214 * 2 1 3 34 34 H 1.09004 * 109.47034 * 59.99475 * 3 2 1 35 35 H 1.08995 * 109.47231 * 300.00171 * 3 2 1 36 36 H 0.96999 * 120.00233 * 240.00178 * 6 4 3 37 37 H 0.96998 * 119.99354 * 0.02562 * 8 7 6 38 38 H 0.96997 * 120.00379 * 179.97438 * 8 7 6 39 39 H 0.96999 * 120.00474 * 0.02562 * 12 10 4 40 40 H 1.08995 * 109.46708 * 296.04831 * 13 12 10 41 41 H 1.08995 * 109.47249 * 56.05313 * 13 12 10 42 42 H 0.97004 * 119.99487 * 242.70345 * 15 14 13 43 43 H 0.97007 * 119.99970 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.52229 * 303.06548 * 24 14 13 45 45 H 1.09004 * 109.52093 * 63.24829 * 24 14 13 46 46 H 1.09003 * 109.40786 * 297.49602 * 25 24 14 47 47 H 1.09004 * 109.49550 * 177.50842 * 25 24 14 48 48 H 1.08998 * 109.47851 * 301.16733 * 27 26 25 49 49 H 1.09001 * 109.48500 * 181.14508 * 27 26 25 50 50 H 1.08998 * 109.51956 * 182.48434 * 28 27 26 51 51 H 1.08999 * 109.57351 * 62.32731 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8530 0.8427 6 7 4.0588 0.8585 -1.2509 7 6 3.7292 1.4205 -2.4307 8 7 4.1743 0.8801 -3.5824 9 8 3.0302 2.4150 -2.4560 10 6 4.0723 2.8578 0.1245 11 8 4.4469 3.4568 -0.8613 12 7 4.1054 3.4579 1.3308 13 6 4.5943 4.8338 1.4512 14 6 4.4358 5.3065 2.8977 15 7 5.1017 4.3618 3.7979 16 6 6.4545 4.1690 3.7091 17 1 7.0148 4.6330 2.9108 18 6 7.1057 3.3776 4.6452 19 7 8.4061 3.1928 4.5602 20 14 6.1365 2.5747 6.0256 21 1 5.6670 1.2358 5.5871 22 1 7.0060 2.4274 7.2203 23 1 4.9660 3.4225 6.3667 24 6 2.9472 5.3876 3.2501 25 6 2.7966 5.9381 4.6707 26 8 3.4296 7.2165 4.7564 27 6 4.8322 7.1923 4.4839 28 6 5.0647 6.6943 3.0551 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 4.6164 0.0651 -1.2307 37 1 4.7316 0.0865 -3.5620 38 1 3.9367 1.2844 -4.4315 39 1 3.8062 2.9788 2.1193 40 1 5.6466 4.8713 1.1700 41 1 4.0185 5.4831 0.7917 42 1 4.5843 3.8727 4.4566 43 1 8.8611 2.6393 5.2141 44 1 2.4424 6.0513 2.5481 45 1 2.5050 4.3929 3.1947 46 1 3.2653 5.2524 5.3765 47 1 1.7382 6.0398 4.9111 48 1 5.3276 6.5230 5.1873 49 1 5.2405 8.1974 4.5896 50 1 6.1354 6.6332 2.8603 51 1 4.6047 7.3850 2.3483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484191877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:54 Heat of formation + Delta-G solvation = -134.100179 kcal Electronic energy + Delta-G solvation = -32534.727506 eV Core-core repulsion = 28275.098406 eV Total energy + Delta-G solvation = -4259.629101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.61992 -40.84187 -39.61242 -37.39253 -36.76631 -35.09024 -34.82304 -33.87934 -33.77874 -32.02200 -31.65283 -30.19531 -28.13164 -25.80446 -25.41801 -24.39910 -23.47085 -22.75336 -21.81209 -20.88446 -20.05703 -19.78187 -19.51608 -18.48360 -17.74791 -17.11052 -16.98897 -16.77132 -16.52342 -16.32979 -16.00376 -15.91985 -15.57589 -15.56056 -15.08326 -15.03694 -14.81017 -14.51571 -14.31554 -14.17316 -14.10376 -13.62957 -13.34317 -13.21484 -12.97639 -12.82966 -12.80118 -12.68810 -12.23916 -12.20217 -12.15275 -11.98124 -11.72599 -11.61630 -11.44302 -11.20862 -11.19625 -10.97448 -10.79086 -10.44826 -10.39885 -9.90669 -9.78361 -9.28857 -7.93689 -5.29644 1.41249 1.45579 1.52809 1.70425 2.00640 2.31814 2.53921 2.56359 3.03998 3.35027 3.48371 3.68248 3.75952 3.84638 3.91093 3.99832 4.05652 4.10120 4.19362 4.28117 4.35017 4.42315 4.56693 4.66991 4.71625 4.75516 4.78250 4.79758 4.86037 4.99794 4.99817 5.05759 5.06579 5.17834 5.25688 5.26296 5.27496 5.34463 5.48597 5.54043 5.63481 5.87073 5.97161 6.13118 6.27686 6.33624 6.73907 7.13974 7.20498 7.44103 7.84418 7.86727 8.07236 9.27672 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003709 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.945082 B = 7546.530260 C = 8017.405689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.124 4.124 4 C 0.156 3.844 5 H 0.137 0.863 6 N -0.722 5.722 7 C 0.702 3.298 8 N -0.855 5.855 9 O -0.615 6.615 10 C 0.488 3.512 11 O -0.566 6.566 12 N -0.699 5.699 13 C 0.134 3.866 14 C 0.195 3.805 15 N -0.730 5.730 16 C -0.205 4.205 17 H 0.050 0.950 18 C -0.058 4.058 19 N -0.986 5.986 20 Si 0.945 3.055 21 H -0.272 1.272 22 H -0.311 1.311 23 H -0.248 1.248 24 C -0.146 4.146 25 C 0.060 3.940 26 O -0.396 6.396 27 C 0.076 3.924 28 C -0.151 4.151 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.415 0.585 37 H 0.410 0.590 38 H 0.416 0.584 39 H 0.407 0.593 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.368 0.632 43 H 0.253 0.747 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.042 0.958 47 H 0.117 0.883 48 H 0.040 0.960 49 H 0.098 0.902 50 H 0.053 0.947 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.045 -8.138 -7.013 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.163 4.163 4 C 0.046 3.954 5 H 0.155 0.845 6 N -0.379 5.379 7 C 0.400 3.600 8 N -0.425 5.425 9 O -0.494 6.494 10 C 0.273 3.727 11 O -0.443 6.443 12 N -0.351 5.351 13 C 0.007 3.993 14 C 0.105 3.895 15 N -0.374 5.374 16 C -0.336 4.336 17 H 0.068 0.932 18 C -0.249 4.249 19 N -0.636 5.636 20 Si 0.773 3.227 21 H -0.197 1.197 22 H -0.239 1.239 23 H -0.173 1.173 24 C -0.184 4.184 25 C -0.016 4.016 26 O -0.315 6.315 27 C -0.001 4.001 28 C -0.191 4.191 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.252 0.748 37 H 0.241 0.759 38 H 0.248 0.752 39 H 0.243 0.757 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.203 0.797 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.060 0.940 47 H 0.135 0.865 48 H 0.058 0.942 49 H 0.116 0.884 50 H 0.072 0.928 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.260 -6.683 -7.589 19.148 hybrid contribution 1.146 -1.296 0.585 1.826 sum -15.114 -7.979 -7.004 18.470 Atomic orbital electron populations 1.21740 0.95358 1.02092 1.01576 1.21427 0.96219 0.94499 1.02684 1.21924 0.91319 0.99521 1.03545 1.20827 0.96411 0.90395 0.87797 0.84503 1.44549 1.57011 1.32949 1.03405 1.16148 0.80131 0.81999 0.81729 1.42768 1.58252 1.34739 1.06696 1.90919 1.44167 1.27605 1.86717 1.21601 0.78120 0.90210 0.82765 1.90702 1.48677 1.66777 1.38173 1.45635 1.65154 1.15174 1.09179 1.21472 0.97106 0.82993 0.97750 1.19939 0.92531 0.89043 0.88004 1.42682 1.04504 1.48963 1.41261 1.18672 0.83726 1.23589 1.07627 0.93213 1.25380 0.95962 1.02183 1.01353 1.69899 1.09519 1.44986 1.39233 0.85582 0.78556 0.79429 0.79150 1.19745 1.23869 1.17282 1.22370 0.94104 1.03303 0.98614 1.22681 0.98806 0.84787 0.95328 1.87828 1.21911 1.30742 1.90985 1.22352 0.81481 1.01305 0.94918 1.22389 1.01185 0.97187 0.98296 0.94054 0.91602 0.92178 0.92209 0.90143 0.89917 0.91980 0.74819 0.75927 0.75151 0.75700 0.95730 0.92586 0.79728 0.93762 0.89504 0.88979 0.93973 0.86469 0.94167 0.88425 0.92783 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.11 -1.73 5.82 30.59 0.18 -1.56 16 3 C -0.12 -2.68 4.54 30.59 0.14 -2.54 16 4 C 0.16 3.75 3.01 44.24 0.13 3.89 16 5 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 6 N -0.72 -15.97 4.65 -461.42 -2.15 -18.12 16 7 C 0.70 19.33 7.60 179.06 1.36 20.69 16 8 N -0.85 -15.15 8.88 -184.75 -1.64 -16.79 16 9 O -0.62 -23.44 13.04 18.42 0.24 -23.20 16 10 C 0.49 16.79 6.82 87.65 0.60 17.39 16 11 O -0.57 -25.03 13.70 19.40 0.27 -24.77 16 12 N -0.70 -22.59 5.13 -463.06 -2.37 -24.97 16 13 C 0.13 4.87 4.38 86.38 0.38 5.25 16 14 C 0.20 6.51 0.41 3.72 0.00 6.51 16 15 N -0.73 -28.45 3.38 -302.80 -1.02 -29.47 16 16 C -0.21 -10.38 9.15 84.03 0.77 -9.61 16 17 H 0.05 2.93 7.02 -2.91 -0.02 2.91 16 18 C -0.06 -3.11 5.50 84.86 0.47 -2.65 16 19 N -0.99 -60.15 13.97 21.65 0.30 -59.85 16 20 Si 0.94 41.09 27.67 68.60 1.90 42.99 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 23 H -0.25 -9.52 6.62 99.48 0.66 -8.86 16 24 C -0.15 -3.74 4.80 30.69 0.15 -3.59 16 25 C 0.06 1.56 6.67 72.01 0.48 2.04 16 26 O -0.40 -12.18 10.77 -148.98 -1.60 -13.79 16 27 C 0.08 2.51 6.68 72.01 0.48 2.99 16 28 C -0.15 -5.17 4.78 30.68 0.15 -5.03 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.95 7.75 -2.39 -0.02 0.94 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.06 1.81 6.03 -2.39 -0.01 1.80 16 36 H 0.42 6.08 8.84 -92.71 -0.82 5.26 16 37 H 0.41 4.16 8.84 -92.71 -0.82 3.34 16 38 H 0.42 6.83 8.93 -92.71 -0.83 6.00 16 39 H 0.41 11.31 7.44 -92.71 -0.69 10.62 16 40 H 0.02 1.10 7.49 -2.39 -0.02 1.08 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.37 13.49 4.77 -92.71 -0.44 13.05 16 43 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.09 1.98 7.41 -2.38 -0.02 1.97 16 46 H 0.04 1.19 7.16 -2.39 -0.02 1.17 16 47 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 48 H 0.04 1.53 7.75 -2.39 -0.02 1.51 16 49 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 50 H 0.05 2.16 7.17 -2.39 -0.02 2.14 16 51 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -81.27 396.56 -2.75 -84.01 By element: Atomic # 1 Polarization: 54.34 SS G_CDS: -2.65 Total: 51.69 kcal Atomic # 6 Polarization: 26.28 SS G_CDS: 5.99 Total: 32.27 kcal Atomic # 7 Polarization: -142.32 SS G_CDS: -6.88 Total: -149.21 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -1.10 Total: -61.75 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.90 Total: 42.99 kcal Total: -81.27 -2.75 -84.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484191877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.086 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds