Wall clock time and date at job start Wed Apr 1 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 C 1.52999 * 109.47060 * 239.99946 * 2 1 3 5 5 C 1.53002 * 109.47067 * 120.00243 * 2 1 3 6 6 H 1.09004 * 109.47204 * 185.14511 * 5 2 1 7 7 N 1.46496 * 109.47016 * 305.14923 * 5 2 1 8 8 C 1.34780 * 119.99681 * 274.99653 * 7 5 2 9 9 N 1.34780 * 119.99890 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00224 * 0.02562 * 8 7 5 11 11 C 1.50698 * 109.47145 * 65.14726 * 5 2 1 12 12 O 1.21282 * 119.99938 * 269.00372 * 11 5 2 13 13 N 1.34776 * 119.99990 * 89.00260 * 11 5 2 14 14 C 1.46500 * 119.99864 * 174.31517 * 13 11 5 15 15 C 1.53003 * 109.47214 * 180.02562 * 14 13 11 16 16 O 1.42900 * 110.64332 * 61.85604 * 15 14 13 17 17 C 1.55159 * 110.72164 * 185.00128 * 15 14 13 18 18 C 1.54907 * 101.58048 * 154.04064 * 17 15 14 19 19 N 1.47420 * 104.83536 * 322.99041 * 18 17 15 20 20 C 1.36942 * 125.64922 * 204.08952 * 19 18 17 21 21 H 1.08004 * 119.99608 * 165.65350 * 20 19 18 22 22 C 1.38807 * 120.00128 * 345.65330 * 20 19 18 23 23 N 1.31627 * 119.99818 * 326.79467 * 22 20 19 24 24 Si 1.86798 * 120.00145 * 146.79189 * 22 20 19 25 25 H 1.48502 * 109.47058 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46983 * 120.00007 * 24 22 20 27 27 H 1.48504 * 109.47073 * 240.00202 * 24 22 20 28 28 C 1.47027 * 108.70405 * 24.35679 * 19 18 17 29 29 H 1.09000 * 109.47148 * 300.00112 * 1 2 3 30 30 H 1.09005 * 109.47225 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.47323 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46864 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47320 * 299.99664 * 3 2 1 34 34 H 1.09001 * 109.46694 * 60.00507 * 3 2 1 35 35 H 1.09002 * 109.47154 * 306.23702 * 4 2 1 36 36 H 1.09000 * 109.47268 * 66.23711 * 4 2 1 37 37 H 1.08997 * 109.47338 * 186.23438 * 4 2 1 38 38 H 0.97000 * 120.00312 * 94.99731 * 7 5 2 39 39 H 0.97004 * 120.00061 * 0.02562 * 9 8 7 40 40 H 0.97000 * 119.99990 * 179.97438 * 9 8 7 41 41 H 0.96996 * 120.00337 * 354.31240 * 13 11 5 42 42 H 1.08997 * 109.47331 * 60.00323 * 14 13 11 43 43 H 1.08999 * 109.47538 * 299.99710 * 14 13 11 44 44 H 0.96703 * 114.00150 * 303.15197 * 16 15 14 45 45 H 1.08998 * 111.00147 * 35.96879 * 17 15 14 46 46 H 1.09000 * 111.03489 * 272.13128 * 17 15 14 47 47 H 1.09001 * 110.36597 * 204.14565 * 18 17 15 48 48 H 1.09005 * 110.36276 * 81.82999 * 18 17 15 49 49 H 0.96993 * 120.00047 * 355.20668 * 23 22 20 50 50 H 1.08995 * 109.88178 * 118.12649 * 28 19 18 51 51 H 1.08996 * 109.87991 * 239.29696 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1261 -0.6422 1.2965 7 7 1.4530 -0.1060 2.4422 8 6 2.0292 0.9811 2.9924 9 7 1.4889 1.5475 4.0896 10 8 3.0357 1.4515 2.4984 11 6 1.6444 -2.1741 1.1871 12 8 0.5950 -2.5382 1.6739 13 7 2.4569 -3.0688 0.5905 14 6 2.1343 -4.4971 0.6384 15 6 3.2098 -5.2882 -0.1089 16 8 4.4847 -5.1175 0.5136 17 6 2.8326 -6.7913 -0.1845 18 6 3.5897 -7.2382 -1.4599 19 7 3.4843 -6.0929 -2.3822 20 6 3.5748 -6.1563 -3.7471 21 1 3.2587 -5.3169 -4.3488 22 6 4.0727 -7.2993 -4.3573 23 7 5.0105 -8.0069 -3.7637 24 14 3.4118 -7.8334 -6.0209 25 1 2.3711 -6.8744 -6.4711 26 1 4.5204 -7.8600 -7.0086 27 1 2.8188 -9.1900 -5.9056 28 6 3.2725 -4.8703 -1.5934 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.5883 -1.7116 -1.3068 36 1 1.7707 -0.1470 -2.1357 37 1 3.1242 -0.8189 -1.1952 38 1 0.6498 -0.4810 2.8360 39 1 0.6857 1.1725 4.4835 40 1 1.9037 2.3297 4.4858 41 1 3.2551 -2.7671 0.1293 42 1 1.1656 -4.6668 0.1685 43 1 2.0972 -4.8266 1.6767 44 1 4.7670 -4.1954 0.5854 45 1 1.7567 -6.9186 -0.3040 46 1 3.1926 -7.3296 0.6923 47 1 3.1159 -8.1190 -1.8932 48 1 4.6348 -7.4438 -1.2282 49 1 5.4029 -7.6930 -2.9341 50 1 4.1003 -4.1792 -1.7513 51 1 2.3333 -4.3998 -1.8841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484246405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:14 Heat of formation + Delta-G solvation = -97.859684 kcal Electronic energy + Delta-G solvation = -32201.583056 eV Core-core repulsion = 27943.525461 eV Total energy + Delta-G solvation = -4258.057595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.21940 -39.74824 -38.74105 -37.01555 -35.45017 -34.50637 -34.18126 -33.23131 -32.30427 -29.79272 -28.91346 -27.48021 -27.42634 -27.00535 -25.36983 -23.61038 -21.61022 -21.26684 -20.28351 -20.12417 -19.30708 -18.96675 -18.06987 -17.50928 -16.95791 -16.47532 -16.39647 -15.82043 -15.38648 -15.12736 -14.67087 -14.50461 -14.34891 -14.27898 -13.86517 -13.80660 -13.63677 -13.27341 -13.19242 -12.98806 -12.90279 -12.37192 -12.28457 -12.18763 -11.85099 -11.79294 -11.53352 -11.12643 -11.08263 -10.97941 -10.77764 -10.67788 -10.57492 -10.50330 -10.42398 -10.08265 -10.01051 -9.96625 -9.79796 -9.56704 -9.34648 -9.21123 -8.35328 -6.98582 -6.17530 -3.13022 2.17285 2.48352 2.86553 3.08553 3.51294 3.53891 3.67905 4.12117 4.26736 4.32027 4.43393 4.51706 4.60117 4.72733 4.83154 5.00592 5.07332 5.16329 5.23227 5.24761 5.46111 5.47301 5.52803 5.64390 5.67588 5.74427 5.76727 5.79389 5.88456 5.95699 5.97592 6.04858 6.09907 6.14641 6.19485 6.25942 6.26187 6.34720 6.40021 6.44738 6.57599 6.91611 7.06092 7.17725 7.60775 7.75660 7.76600 7.89334 8.29354 8.46297 8.98102 9.79040 10.33865 11.17610 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.018298 B = 0.002690 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.828053 B =10407.278096 C =11110.007677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.129 4.129 4 C -0.153 4.153 5 C 0.157 3.843 6 H 0.109 0.891 7 N -0.726 5.726 8 C 0.708 3.292 9 N -0.868 5.868 10 O -0.587 6.587 11 C 0.519 3.481 12 O -0.535 6.535 13 N -0.721 5.721 14 C 0.105 3.895 15 C 0.105 3.895 16 O -0.543 6.543 17 C -0.119 4.119 18 C 0.148 3.852 19 N -0.597 5.597 20 C -0.346 4.346 21 H 0.066 0.934 22 C -0.022 4.022 23 N -0.908 5.908 24 Si 1.064 2.936 25 H -0.292 1.292 26 H -0.295 1.295 27 H -0.289 1.289 28 C 0.117 3.883 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.406 0.594 39 H 0.397 0.603 40 H 0.415 0.585 41 H 0.401 0.599 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.366 0.634 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.031 0.969 49 H 0.271 0.729 50 H 0.025 0.975 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 17.743 14.989 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.186 4.186 4 C -0.211 4.211 5 C 0.047 3.953 6 H 0.127 0.873 7 N -0.383 5.383 8 C 0.407 3.593 9 N -0.436 5.436 10 O -0.465 6.465 11 C 0.304 3.696 12 O -0.412 6.412 13 N -0.373 5.373 14 C -0.019 4.019 15 C 0.063 3.937 16 O -0.348 6.348 17 C -0.157 4.157 18 C 0.022 3.978 19 N -0.324 5.324 20 C -0.473 4.473 21 H 0.084 0.916 22 C -0.224 4.224 23 N -0.547 5.547 24 Si 0.894 3.106 25 H -0.218 1.218 26 H -0.222 1.222 27 H -0.216 1.216 28 C -0.009 4.009 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.242 0.758 39 H 0.225 0.775 40 H 0.247 0.753 41 H 0.237 0.763 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.213 0.787 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.043 0.957 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.946 15.889 13.572 22.731 hybrid contribution -0.216 1.983 1.440 2.460 sum -9.162 17.872 15.012 25.074 Atomic orbital electron populations 1.21870 0.93736 1.02565 1.01726 1.20898 0.96710 0.96673 0.93117 1.21872 1.01723 0.93630 1.01378 1.22034 1.01391 1.00839 0.96809 1.20757 1.00053 0.88796 0.85712 0.87334 1.44746 1.32084 1.30930 1.30581 1.15825 0.82950 0.80230 0.80344 1.42965 1.33359 1.35853 1.31386 1.90997 1.26118 1.65087 1.64252 1.20441 0.83995 0.87409 0.77771 1.90691 1.22985 1.80566 1.46934 1.46017 1.27801 1.07332 1.56180 1.22091 0.99505 0.78727 1.01598 1.22547 0.82227 0.97011 0.91876 1.86632 1.35505 1.30611 1.82037 1.22818 1.00827 0.91794 1.00300 1.21499 0.97105 0.91704 0.87458 1.44514 1.85723 1.00057 1.02105 1.19691 1.42900 1.05032 0.79675 0.91647 1.25702 0.95785 0.96176 1.04773 1.70724 1.20195 1.44136 1.19688 0.83572 0.75810 0.75977 0.75271 1.21807 1.22219 1.21602 1.21932 0.98384 0.91617 0.89004 0.92630 0.92400 0.91983 0.91832 0.93130 0.92257 0.91866 0.91402 0.92048 0.75826 0.77516 0.75259 0.76331 0.89978 0.90560 0.78723 0.90108 0.90573 0.92875 0.95157 0.91836 0.95724 0.94947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.02 37.16 0.30 -1.06 16 2 C -0.07 -0.69 0.62 -154.51 -0.10 -0.79 16 3 C -0.13 -1.29 7.08 37.16 0.26 -1.02 16 4 C -0.15 -1.49 7.41 37.16 0.28 -1.22 16 5 C 0.16 1.55 1.94 -69.08 -0.13 1.41 16 6 H 0.11 1.11 7.58 -51.93 -0.39 0.71 16 7 N -0.73 -6.40 4.03 -59.81 -0.24 -6.64 16 8 C 0.71 6.67 7.41 -86.91 -0.64 6.02 16 9 N -0.87 -4.66 8.88 27.64 0.25 -4.41 16 10 O -0.59 -7.59 14.31 5.29 0.08 -7.51 16 11 C 0.52 5.90 5.32 -10.99 -0.06 5.84 16 12 O -0.54 -7.36 15.25 5.56 0.08 -7.27 16 13 N -0.72 -7.93 4.26 -60.29 -0.26 -8.19 16 14 C 0.10 1.37 4.76 -4.04 -0.02 1.35 16 15 C 0.10 1.66 0.93 -88.77 -0.08 1.58 16 16 O -0.54 -8.55 13.09 -35.23 -0.46 -9.02 16 17 C -0.12 -2.08 6.26 -24.58 -0.15 -2.23 16 18 C 0.15 3.41 5.35 -2.53 -0.01 3.40 16 19 N -0.60 -14.81 3.31 -170.06 -0.56 -15.37 16 20 C -0.35 -9.67 9.97 -15.06 -0.15 -9.82 16 21 H 0.07 1.83 8.01 -52.48 -0.42 1.41 16 22 C -0.02 -0.62 4.98 -17.43 -0.09 -0.70 16 23 N -0.91 -27.39 12.96 55.49 0.72 -26.67 16 24 Si 1.06 25.31 30.03 -169.99 -5.10 20.20 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.12 2.27 6.04 -3.05 -0.02 2.25 16 29 H 0.05 0.50 7.47 -51.93 -0.39 0.11 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.69 6.82 -51.93 -0.35 0.34 16 32 H 0.06 0.70 7.85 -51.92 -0.41 0.29 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.64 5.64 -51.93 -0.29 0.35 16 35 H 0.06 0.69 6.87 -51.93 -0.36 0.34 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 38 H 0.41 3.24 7.85 -40.82 -0.32 2.92 16 39 H 0.40 1.12 8.84 -40.82 -0.36 0.76 16 40 H 0.42 1.80 8.93 -40.82 -0.36 1.43 16 41 H 0.40 3.88 6.85 -40.82 -0.28 3.60 16 42 H 0.08 1.15 8.13 -51.93 -0.42 0.72 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.37 4.30 8.05 45.56 0.37 4.67 16 45 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 46 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.05 1.33 7.93 -51.93 -0.41 0.91 16 48 H 0.03 0.77 6.97 -51.93 -0.36 0.41 16 49 H 0.27 8.26 6.41 -40.82 -0.26 8.00 16 50 H 0.02 0.49 8.07 -51.93 -0.42 0.07 16 51 H 0.03 0.62 7.83 -51.93 -0.41 0.22 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -35.33 396.39 -7.75 -43.08 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -7.60 Total: 10.82 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.62 Total: 5.02 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.10 Total: -61.29 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.30 Total: -23.80 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.10 Total: 20.20 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.33 -7.75 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484246405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.784 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds