Wall clock time and date at job start Wed Apr 1 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47082 * 2 1 4 4 C 1.53000 * 109.47334 * 239.99722 * 2 1 3 5 5 C 1.53003 * 109.46993 * 119.99677 * 2 1 3 6 6 H 1.09006 * 109.46969 * 304.13179 * 5 2 1 7 7 N 1.46496 * 109.47345 * 64.13318 * 5 2 1 8 8 C 1.34775 * 120.00139 * 275.00285 * 7 5 2 9 9 N 1.34776 * 119.99971 * 179.72320 * 8 7 5 10 10 O 1.21584 * 120.00028 * 359.97438 * 8 7 5 11 11 C 1.50700 * 109.47181 * 184.13715 * 5 2 1 12 12 O 1.21284 * 119.99817 * 265.01550 * 11 5 2 13 13 N 1.34775 * 120.00385 * 85.00611 * 11 5 2 14 14 C 1.46502 * 120.00294 * 174.72581 * 13 11 5 15 15 C 1.52998 * 109.47150 * 180.02562 * 14 13 11 16 16 O 1.42904 * 110.88297 * 297.57415 * 15 14 13 17 17 C 1.55158 * 111.00029 * 173.65643 * 15 14 13 18 18 C 1.54331 * 102.94008 * 206.42315 * 17 15 14 19 19 N 1.47022 * 107.26860 * 22.18809 * 18 17 15 20 20 C 1.36938 * 125.64668 * 181.09345 * 19 18 17 21 21 H 1.08003 * 119.99806 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.99912 * 359.96202 * 20 19 18 23 23 N 1.31614 * 120.00050 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00013 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46789 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47004 * 119.99857 * 24 22 20 27 27 H 1.48498 * 109.47061 * 240.00637 * 24 22 20 28 28 C 1.47428 * 108.70454 * 1.06259 * 19 18 17 29 29 H 1.08997 * 109.47483 * 300.00109 * 1 2 3 30 30 H 1.08997 * 109.47049 * 60.00491 * 1 2 3 31 31 H 1.09001 * 109.46458 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47154 * 174.69082 * 3 2 1 33 33 H 1.08997 * 109.46745 * 294.69403 * 3 2 1 34 34 H 1.08999 * 109.46969 * 54.68682 * 3 2 1 35 35 H 1.08993 * 109.47296 * 299.99682 * 4 2 1 36 36 H 1.08998 * 109.46749 * 60.00125 * 4 2 1 37 37 H 1.09002 * 109.47020 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99908 * 94.99287 * 7 5 2 39 39 H 0.96997 * 120.00050 * 359.97438 * 9 8 7 40 40 H 0.97001 * 119.99836 * 179.97438 * 9 8 7 41 41 H 0.96999 * 120.00006 * 354.73452 * 13 11 5 42 42 H 1.08998 * 109.47397 * 300.00838 * 14 13 11 43 43 H 1.09000 * 109.46745 * 60.00625 * 14 13 11 44 44 H 0.96700 * 114.00224 * 59.30761 * 16 15 14 45 45 H 1.08999 * 110.71945 * 324.78266 * 17 15 14 46 46 H 1.08994 * 110.72304 * 88.05876 * 17 15 14 47 47 H 1.08997 * 109.88174 * 262.77634 * 18 17 15 48 48 H 1.08994 * 109.88327 * 141.60773 * 18 17 15 49 49 H 0.97006 * 119.99966 * 179.97438 * 23 22 20 50 50 H 1.09000 * 110.36759 * 217.02817 * 28 19 18 51 51 H 1.09005 * 110.36720 * 94.70855 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6174 -0.2518 2.1378 7 7 1.6347 -2.1281 1.2007 8 6 0.4159 -2.4940 1.6446 9 7 0.0409 -3.7876 1.5947 10 8 -0.3471 -1.6565 2.0859 11 6 3.5435 -0.6331 1.3017 12 8 4.2197 -1.5364 0.8571 13 7 4.1367 0.4496 1.8423 14 6 5.5929 0.4856 1.9987 15 6 6.0051 1.8154 2.6331 16 8 5.6533 2.9133 1.7886 17 6 7.5215 1.8287 2.9611 18 6 7.6134 2.8317 4.1305 19 7 6.2823 2.9020 4.7507 20 6 5.9369 3.6967 5.8111 21 1 4.9277 3.6761 6.1952 22 6 6.8840 4.5283 6.3926 23 7 8.1138 4.5535 5.9244 24 14 6.4128 5.6129 7.8388 25 1 4.9810 5.4004 8.1708 26 1 7.2502 5.2624 9.0139 27 1 6.6323 7.0374 7.4814 28 6 5.3807 1.9759 4.0415 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1258 1.4440 0.0951 33 1 1.7563 1.9281 -0.9337 34 1 1.6011 1.9831 0.8386 35 1 1.6768 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1301 -0.7209 -1.2494 38 1 2.2434 -2.7964 0.8489 39 1 0.6480 -4.4552 1.2390 40 1 -0.8362 -4.0510 1.9146 41 1 3.5995 1.2050 2.1281 42 1 5.9099 -0.3365 2.6405 43 1 6.0658 0.3867 1.0216 44 1 4.7075 2.9746 1.5967 45 1 7.8571 0.8400 3.2739 46 1 8.0982 2.1800 2.1055 47 1 7.8995 3.8140 3.7547 48 1 8.3446 2.4843 4.8603 49 1 8.7756 5.1350 6.3306 50 1 4.3806 2.4029 3.9667 51 1 5.3461 1.0140 4.5530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484246406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:16 Heat of formation + Delta-G solvation = -121.211055 kcal Electronic energy + Delta-G solvation = -32127.967362 eV Core-core repulsion = 27868.897176 eV Total energy + Delta-G solvation = -4259.070186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.04199 -40.67232 -39.83511 -37.81739 -36.78437 -35.46685 -34.94123 -34.00910 -33.84237 -31.47942 -30.15505 -28.48036 -28.16587 -27.82373 -27.14206 -25.12753 -22.52986 -22.23281 -21.65560 -21.38788 -20.12847 -19.68049 -18.87649 -18.73892 -17.81883 -17.44059 -17.17250 -16.78891 -16.70837 -16.18566 -15.85013 -15.78714 -15.67737 -15.24860 -15.10777 -15.05771 -14.61215 -14.31141 -14.28645 -13.90977 -13.82096 -13.53587 -13.24085 -13.06977 -12.92972 -12.89886 -12.79363 -12.54551 -12.34259 -12.27191 -12.07590 -11.97609 -11.90346 -11.79741 -11.71817 -11.68355 -11.35598 -10.98346 -10.86740 -10.68923 -10.58778 -10.19131 -9.97482 -8.87836 -7.84510 -5.19558 1.36449 1.46332 1.47061 1.57229 1.69018 2.14975 2.30412 2.49264 3.18731 3.34256 3.42403 3.50854 3.61274 3.69045 3.72509 3.86978 3.94663 3.98114 4.08728 4.34308 4.47742 4.52511 4.60333 4.66943 4.75041 4.81214 4.82800 4.91868 4.95483 4.97958 5.02964 5.04576 5.08521 5.13557 5.25131 5.26217 5.34311 5.44120 5.45288 5.50165 5.65458 5.77814 5.85065 6.06998 6.19914 6.33119 6.82539 7.01117 7.05950 7.10407 7.66426 7.77723 8.41216 9.26233 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.002684 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.251242 B =10428.887207 C =10967.205394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.159 4.159 4 C -0.136 4.136 5 C 0.158 3.842 6 H 0.104 0.896 7 N -0.721 5.721 8 C 0.704 3.296 9 N -0.849 5.849 10 O -0.625 6.625 11 C 0.524 3.476 12 O -0.557 6.557 13 N -0.713 5.713 14 C 0.120 3.880 15 C 0.122 3.878 16 O -0.551 6.551 17 C -0.120 4.120 18 C 0.189 3.811 19 N -0.621 5.621 20 C -0.239 4.239 21 H 0.084 0.916 22 C -0.068 4.068 23 N -0.951 5.951 24 Si 0.977 3.023 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.111 3.889 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.411 0.589 39 H 0.412 0.588 40 H 0.422 0.578 41 H 0.410 0.590 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.382 0.618 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.007 0.993 48 H 0.008 0.992 49 H 0.246 0.754 50 H 0.052 0.948 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 -16.162 -15.643 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.070 4.070 3 C -0.217 4.217 4 C -0.193 4.193 5 C 0.048 3.952 6 H 0.122 0.878 7 N -0.379 5.379 8 C 0.402 3.598 9 N -0.418 5.418 10 O -0.506 6.506 11 C 0.310 3.690 12 O -0.436 6.436 13 N -0.366 5.366 14 C -0.005 4.005 15 C 0.080 3.920 16 O -0.358 6.358 17 C -0.158 4.158 18 C 0.064 3.936 19 N -0.347 5.347 20 C -0.368 4.368 21 H 0.102 0.898 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.806 3.194 25 H -0.188 1.188 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.015 4.015 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.248 0.752 39 H 0.242 0.758 40 H 0.255 0.745 41 H 0.247 0.753 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.231 0.769 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.026 0.974 48 H 0.026 0.974 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.298 -15.773 -15.429 26.292 hybrid contribution -0.337 0.339 1.035 1.140 sum -14.635 -15.434 -14.393 25.682 Atomic orbital electron populations 1.21765 0.92855 1.01724 1.01437 1.20861 0.96803 0.95887 0.93405 1.22137 1.01481 0.94091 1.03956 1.21812 1.00548 1.00393 0.96575 1.20710 0.89853 0.83349 1.01289 0.87839 1.44652 1.16404 1.08661 1.68160 1.15998 0.81737 0.83822 0.78242 1.42797 1.22579 1.06272 1.70200 1.90974 1.53879 1.51427 1.54298 1.20585 0.90198 0.81696 0.76498 1.90682 1.66195 1.39311 1.47382 1.45978 1.08068 1.19746 1.62853 1.21792 0.80290 0.96586 1.01823 1.22398 0.96015 0.85064 0.88538 1.86623 1.30068 1.49988 1.69092 1.22789 0.93657 1.00689 0.98703 1.20837 0.86679 0.95048 0.91028 1.44634 1.07588 1.46940 1.35509 1.19487 0.96029 1.15513 1.05775 0.89788 1.25652 0.95920 1.01871 1.02645 1.70197 1.03272 1.42521 1.44069 0.85023 0.77852 0.77955 0.78584 1.18820 1.22054 1.22083 1.22376 0.94125 0.93300 0.91667 0.93084 0.92136 0.93400 0.91992 0.90670 0.91078 0.92455 0.91497 0.93358 0.75165 0.75796 0.74468 0.75300 0.90242 0.89823 0.76941 0.88631 0.89835 0.97447 0.97355 0.94502 0.92929 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 7.06 71.98 0.51 -1.63 16 2 C -0.07 -1.08 0.62 -52.18 -0.03 -1.12 16 3 C -0.16 -2.22 7.67 71.98 0.55 -1.67 16 4 C -0.14 -2.12 8.05 71.98 0.58 -1.54 16 5 C 0.16 2.90 1.94 44.25 0.09 2.98 16 6 H 0.10 2.09 7.58 -2.38 -0.02 2.08 16 7 N -0.72 -12.03 4.06 -461.41 -1.87 -13.90 16 8 C 0.70 12.88 7.36 179.06 1.32 14.20 16 9 N -0.85 -8.29 8.88 -184.75 -1.64 -9.93 16 10 O -0.62 -16.26 14.31 -3.98 -0.06 -16.32 16 11 C 0.52 10.87 5.37 87.66 0.47 11.34 16 12 O -0.56 -14.15 15.43 -3.04 -0.05 -14.20 16 13 N -0.71 -14.01 3.94 -463.06 -1.83 -15.84 16 14 C 0.12 2.82 4.90 86.38 0.42 3.24 16 15 C 0.12 3.71 0.95 -9.41 -0.01 3.70 16 16 O -0.55 -16.96 13.19 -148.98 -1.96 -18.92 16 17 C -0.12 -4.25 6.16 31.79 0.20 -4.05 16 18 C 0.19 9.38 5.37 86.73 0.47 9.84 16 19 N -0.62 -31.21 3.39 -691.99 -2.35 -33.56 16 20 C -0.24 -13.28 10.28 84.03 0.86 -12.42 16 21 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 23 N -0.95 -57.91 10.31 21.65 0.22 -57.69 16 24 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 28 C 0.11 4.10 5.93 86.85 0.51 4.62 16 29 H 0.05 1.05 7.79 -2.39 -0.02 1.03 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.95 5.67 -2.39 -0.01 0.94 16 32 H 0.06 0.90 5.78 -2.39 -0.01 0.89 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.87 7.49 -2.39 -0.02 0.85 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.88 6.94 -2.39 -0.02 0.87 16 38 H 0.41 6.04 7.80 -92.71 -0.72 5.32 16 39 H 0.41 1.71 8.84 -92.71 -0.82 0.89 16 40 H 0.42 3.28 8.93 -92.71 -0.83 2.45 16 41 H 0.41 6.91 6.40 -92.71 -0.59 6.32 16 42 H 0.08 1.94 8.11 -2.39 -0.02 1.92 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.38 8.38 8.16 -74.06 -0.60 7.77 16 45 H 0.10 2.95 8.01 -2.39 -0.02 2.93 16 46 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 47 H 0.01 0.42 7.38 -2.39 -0.02 0.40 16 48 H 0.01 0.46 7.51 -2.39 -0.02 0.44 16 49 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 50 H 0.05 1.79 7.97 -2.39 -0.02 1.77 16 51 H 0.03 1.21 8.04 -2.38 -0.02 1.19 16 Total: -1.00 -77.18 394.93 -3.67 -80.85 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -2.57 Total: 27.40 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 6.40 Total: 24.09 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -7.46 Total: -130.91 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -2.07 Total: -49.44 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.18 -3.67 -80.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484246406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.360 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds