Wall clock time and date at job start Wed Apr 1 2020 01:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.52997 * 109.47231 * 240.00191 * 2 1 3 5 5 C 1.53001 * 109.46930 * 120.00321 * 2 1 3 6 6 H 1.09000 * 109.46562 * 178.59216 * 5 2 1 7 7 N 1.46497 * 109.47379 * 58.59079 * 5 2 1 8 8 C 1.34774 * 120.00060 * 84.99839 * 7 5 2 9 9 N 1.34775 * 119.99591 * 179.72350 * 8 7 5 10 10 O 1.21587 * 120.00012 * 0.02562 * 8 7 5 11 11 C 1.50697 * 109.46782 * 298.58534 * 5 2 1 12 12 O 1.21284 * 120.00133 * 91.43184 * 11 5 2 13 13 N 1.34779 * 120.00625 * 271.42478 * 11 5 2 14 14 C 1.46497 * 120.00251 * 185.14025 * 13 11 5 15 15 C 1.52997 * 109.46934 * 180.02562 * 14 13 11 16 16 O 1.42906 * 110.88787 * 61.11815 * 15 14 13 17 17 C 1.55152 * 111.00718 * 184.99916 * 15 14 13 18 18 C 1.54317 * 102.94606 * 153.57779 * 17 15 14 19 19 N 1.47019 * 107.26992 * 337.80559 * 18 17 15 20 20 C 1.36939 * 125.64849 * 178.98802 * 19 18 17 21 21 H 1.07998 * 120.00438 * 179.97438 * 20 19 18 22 22 C 1.38820 * 120.00121 * 359.97438 * 20 19 18 23 23 N 1.31614 * 119.99703 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47091 * 60.00130 * 24 22 20 26 26 H 1.48504 * 109.46852 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46946 * 299.99833 * 24 22 20 28 28 C 1.47424 * 108.70551 * 358.94333 * 19 18 17 29 29 H 1.08996 * 109.47517 * 299.99924 * 1 2 3 30 30 H 1.09006 * 109.47123 * 59.99923 * 1 2 3 31 31 H 1.09003 * 109.47267 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47079 * 173.61946 * 3 2 1 33 33 H 1.08995 * 109.47078 * 293.62431 * 3 2 1 34 34 H 1.09003 * 109.46861 * 53.62330 * 3 2 1 35 35 H 1.08999 * 109.47251 * 299.99754 * 4 2 1 36 36 H 1.09006 * 109.47160 * 59.99908 * 4 2 1 37 37 H 1.08998 * 109.47282 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99603 * 264.99808 * 7 5 2 39 39 H 0.97007 * 119.99742 * 180.27605 * 9 8 7 40 40 H 0.97002 * 120.00560 * 0.27876 * 9 8 7 41 41 H 0.97004 * 119.99536 * 5.14177 * 13 11 5 42 42 H 1.08997 * 109.46980 * 299.99516 * 14 13 11 43 43 H 1.08996 * 109.47074 * 60.00107 * 14 13 11 44 44 H 0.96701 * 113.99731 * 300.70144 * 16 15 14 45 45 H 1.09004 * 110.72226 * 271.94295 * 17 15 14 46 46 H 1.08995 * 110.72028 * 35.20984 * 17 15 14 47 47 H 1.08996 * 109.88741 * 97.22862 * 18 17 15 48 48 H 1.09006 * 109.88302 * 218.23901 * 18 17 15 49 49 H 0.97006 * 120.00164 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.36687 * 265.29195 * 28 19 18 51 51 H 1.08999 * 110.36579 * 142.96565 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2492 6 1 3.1296 -0.7432 1.2366 7 7 1.5241 -2.0924 1.2663 8 6 2.1738 -3.0652 0.5970 9 7 1.7022 -4.3276 0.6174 10 8 3.1883 -2.8050 -0.0206 11 6 1.5664 0.0090 2.4794 12 8 0.5187 -0.3034 3.0045 13 7 2.3071 1.0094 2.9963 14 6 1.9053 1.6440 4.2541 15 6 2.9089 2.7408 4.6152 16 8 2.9439 3.7519 3.6059 17 6 2.5881 3.3527 6.0044 18 6 3.9634 3.8634 6.4832 19 7 4.9891 3.1115 5.7456 20 6 6.3428 3.2794 5.8661 21 1 7.0165 2.6745 5.2775 22 6 6.8491 4.2273 6.7449 23 7 6.0281 4.9648 7.4619 24 14 8.6957 4.4568 6.9087 25 1 9.2646 4.8468 5.5937 26 1 8.9756 5.5226 7.9043 27 1 9.3148 3.1840 7.3581 28 6 4.3190 2.1460 4.8555 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1239 1.4446 0.1142 33 1 1.7728 1.9223 -0.9415 34 1 1.5864 1.9882 0.8274 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 0.7149 -2.3000 1.7593 39 1 2.1720 -5.0286 0.1389 40 1 0.8930 -4.5353 1.1103 41 1 3.1063 1.3092 2.5354 42 1 0.9140 2.0825 4.1393 43 1 1.8823 0.8965 5.0470 44 1 3.1885 3.4244 2.7295 45 1 1.8823 4.1779 5.9088 46 1 2.2025 2.5908 6.6817 47 1 4.0586 4.9279 6.2695 48 1 4.0712 3.6894 7.5539 49 1 6.3818 5.6269 8.0763 50 1 4.2425 1.1728 5.3404 51 1 4.8601 2.0600 3.9133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484246408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:23 Heat of formation + Delta-G solvation = -93.024700 kcal Electronic energy + Delta-G solvation = -32099.405659 eV Core-core repulsion = 27841.557725 eV Total energy + Delta-G solvation = -4257.847934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18052 -39.65952 -38.57120 -36.99309 -35.20030 -34.38810 -34.11593 -33.20427 -32.13774 -29.82977 -28.77830 -27.45771 -27.39316 -27.02300 -25.51330 -23.55430 -21.57235 -21.20996 -20.16395 -20.00075 -19.28706 -18.91387 -18.00106 -16.96466 -16.80572 -16.46750 -16.26550 -15.78797 -15.22392 -14.99148 -14.72105 -14.52454 -14.37548 -14.33796 -13.94471 -13.81756 -13.60936 -13.25646 -13.01023 -12.87724 -12.39751 -12.32772 -12.18705 -11.93757 -11.81845 -11.73548 -11.55402 -11.14108 -11.01446 -11.00570 -10.88129 -10.75400 -10.51817 -10.36729 -10.24451 -10.14803 -9.93119 -9.92266 -9.76078 -9.47572 -9.28823 -9.15242 -8.59615 -6.84707 -5.72198 -3.05944 2.21211 2.54464 2.91906 3.13153 3.40433 3.44553 3.45890 4.16011 4.34277 4.42065 4.46310 4.47895 4.60470 4.78298 4.85759 5.08385 5.10274 5.23246 5.33963 5.41997 5.49842 5.50202 5.60143 5.62398 5.71435 5.75565 5.77062 5.84622 5.90683 5.95347 6.05058 6.13719 6.14034 6.19904 6.25471 6.34296 6.38972 6.40376 6.51925 6.57411 6.61932 7.24006 7.52163 7.62184 7.65162 7.82350 7.91742 7.97360 8.24316 8.33950 9.19995 9.80072 10.44924 11.39438 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.002681 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.127334 B =10441.274267 C =11012.338055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.154 4.154 4 C -0.128 4.128 5 C 0.155 3.845 6 H 0.110 0.890 7 N -0.726 5.726 8 C 0.709 3.291 9 N -0.868 5.868 10 O -0.587 6.587 11 C 0.518 3.482 12 O -0.537 6.537 13 N -0.719 5.719 14 C 0.104 3.896 15 C 0.102 3.898 16 O -0.535 6.535 17 C -0.128 4.128 18 C 0.182 3.818 19 N -0.598 5.598 20 C -0.232 4.232 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.117 3.883 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.405 0.595 39 H 0.415 0.585 40 H 0.397 0.603 41 H 0.401 0.599 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.363 0.637 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.044 0.956 49 H 0.253 0.747 50 H 0.026 0.974 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 -14.133 -15.018 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.211 4.211 4 C -0.185 4.185 5 C 0.046 3.954 6 H 0.127 0.873 7 N -0.384 5.384 8 C 0.407 3.593 9 N -0.436 5.436 10 O -0.465 6.465 11 C 0.303 3.697 12 O -0.413 6.413 13 N -0.371 5.371 14 C -0.020 4.020 15 C 0.059 3.941 16 O -0.339 6.339 17 C -0.166 4.166 18 C 0.057 3.943 19 N -0.324 5.324 20 C -0.360 4.360 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.010 4.010 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.242 0.758 39 H 0.247 0.753 40 H 0.225 0.775 41 H 0.236 0.764 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.208 0.792 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.043 0.957 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.607 -13.436 -14.416 23.948 hybrid contribution 0.930 -0.622 -0.220 1.140 sum -12.677 -14.057 -14.636 23.927 Atomic orbital electron populations 1.21876 0.93773 1.02045 1.02188 1.20889 0.96616 0.95624 0.94292 1.22034 1.01513 0.94527 1.03067 1.21864 1.01933 0.99745 0.94986 1.20760 1.00649 0.81319 0.92700 0.87256 1.44735 1.30925 1.06976 1.55719 1.15813 0.82978 0.80793 0.79726 1.42963 1.32560 1.08825 1.59220 1.90997 1.25703 1.81898 1.47873 1.20428 0.84214 0.80268 0.84771 1.90687 1.22612 1.65979 1.62063 1.46029 1.29123 1.36593 1.25401 1.22089 0.99158 0.95490 0.85268 1.22722 0.94501 0.86954 0.89887 1.86658 1.91970 1.35647 1.19620 1.22905 1.01349 1.00384 0.91994 1.21131 0.82008 0.95913 0.95242 1.44323 1.02071 1.40372 1.45598 1.18981 0.80435 1.16667 1.19883 0.90556 1.24802 0.97956 0.98505 0.98994 1.69946 1.32444 1.25542 1.28805 0.86189 0.84715 0.77370 0.77406 1.21135 1.21573 1.21174 1.22135 0.90906 0.93272 0.94704 0.92019 0.92490 0.92607 0.91867 0.91475 0.91913 0.92538 0.93211 0.91563 0.75843 0.75262 0.77525 0.76359 0.90533 0.90319 0.79156 0.90907 0.90942 0.93125 0.93795 0.93644 0.95657 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.99 37.16 0.30 -0.96 16 2 C -0.07 -0.65 0.62 -154.51 -0.10 -0.74 16 3 C -0.15 -1.25 7.49 37.16 0.28 -0.97 16 4 C -0.13 -1.22 7.01 37.16 0.26 -0.96 16 5 C 0.16 1.55 1.93 -69.08 -0.13 1.41 16 6 H 0.11 1.17 7.58 -51.93 -0.39 0.78 16 7 N -0.73 -6.61 4.14 -59.82 -0.25 -6.86 16 8 C 0.71 6.96 7.25 -86.92 -0.63 6.33 16 9 N -0.87 -5.02 8.88 27.63 0.25 -4.78 16 10 O -0.59 -7.86 14.30 5.29 0.08 -7.79 16 11 C 0.52 5.90 5.33 -10.99 -0.06 5.85 16 12 O -0.54 -7.37 15.22 5.55 0.08 -7.28 16 13 N -0.72 -7.94 4.29 -60.30 -0.26 -8.20 16 14 C 0.10 1.37 4.89 -4.04 -0.02 1.35 16 15 C 0.10 1.65 0.95 -88.47 -0.08 1.56 16 16 O -0.54 -8.79 13.19 -35.23 -0.46 -9.26 16 17 C -0.13 -2.33 6.16 -24.90 -0.15 -2.48 16 18 C 0.18 4.39 5.37 -3.07 -0.02 4.37 16 19 N -0.60 -14.98 3.39 -170.07 -0.58 -15.56 16 20 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 21 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -27.04 10.31 55.49 0.57 -26.47 16 24 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.12 2.26 5.98 -2.53 -0.02 2.24 16 29 H 0.06 0.64 6.73 -51.93 -0.35 0.29 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 7.57 -51.93 -0.39 0.09 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.54 6.89 -51.93 -0.36 0.18 16 35 H 0.06 0.59 5.74 -51.93 -0.30 0.29 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.72 7.62 -51.93 -0.40 0.32 16 38 H 0.41 3.34 7.84 -40.82 -0.32 3.02 16 39 H 0.42 1.98 8.93 -40.82 -0.36 1.61 16 40 H 0.40 1.27 8.84 -40.82 -0.36 0.91 16 41 H 0.40 3.88 6.85 -40.82 -0.28 3.60 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 44 H 0.36 4.46 8.07 45.56 0.37 4.83 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 47 H 0.05 1.39 7.38 -51.93 -0.38 1.00 16 48 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 49 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.03 0.50 8.04 -51.93 -0.42 0.08 16 51 H 0.04 0.69 8.02 -51.93 -0.42 0.28 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -34.91 396.08 -7.92 -42.83 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.67 Total: 10.16 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -0.62 Total: 10.17 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.27 Total: -61.87 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.30 Total: -24.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.91 -7.92 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484246408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.195 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds