Wall clock time and date at job start Wed Apr 1 2020 01:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47129 * 2 1 4 4 C 1.52999 * 109.47146 * 240.00156 * 2 1 3 5 5 C 1.52997 * 109.47109 * 119.99893 * 2 1 3 6 6 H 1.08995 * 109.47789 * 305.85050 * 5 2 1 7 7 N 1.46503 * 109.47267 * 65.85372 * 5 2 1 8 8 C 1.34779 * 119.99595 * 275.00260 * 7 5 2 9 9 N 1.34783 * 119.99346 * 179.72274 * 8 7 5 10 10 O 1.21583 * 120.00164 * 359.97438 * 8 7 5 11 11 C 1.50704 * 109.47009 * 185.85026 * 5 2 1 12 12 O 1.21281 * 120.00074 * 272.92376 * 11 5 2 13 13 N 1.34773 * 119.99957 * 92.92546 * 11 5 2 14 14 C 1.47155 * 120.98282 * 354.62997 * 13 11 5 15 15 C 1.53712 * 108.16491 * 129.43358 * 14 13 11 16 16 O 1.42958 * 109.14792 * 52.53438 * 15 14 13 17 17 C 1.42964 * 114.16752 * 297.29331 * 16 15 14 18 18 H 1.09004 * 109.54901 * 302.62521 * 17 16 15 19 19 C 1.52997 * 109.51130 * 182.50881 * 17 16 15 20 20 N 1.46496 * 109.47792 * 65.24688 * 19 17 16 21 21 C 1.36938 * 120.00237 * 180.02562 * 20 19 17 22 22 H 1.07992 * 119.99761 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99691 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00571 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99911 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47126 * 89.99914 * 25 23 21 27 27 H 1.48505 * 109.46952 * 210.00376 * 25 23 21 28 28 H 1.48501 * 109.46677 * 329.99704 * 25 23 21 29 29 C 1.47153 * 120.98461 * 174.90733 * 13 11 5 30 30 H 1.09005 * 109.46661 * 299.99834 * 1 2 3 31 31 H 1.08993 * 109.47152 * 59.99782 * 1 2 3 32 32 H 1.08999 * 109.46695 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46645 * 181.94210 * 3 2 1 34 34 H 1.08995 * 109.46837 * 301.94174 * 3 2 1 35 35 H 1.08997 * 109.46461 * 61.94273 * 3 2 1 36 36 H 1.09004 * 109.46826 * 299.99811 * 4 2 1 37 37 H 1.09004 * 109.47472 * 59.99797 * 4 2 1 38 38 H 1.08999 * 109.47091 * 180.02562 * 4 2 1 39 39 H 0.96997 * 119.99996 * 94.99184 * 7 5 2 40 40 H 0.96993 * 120.00613 * 359.97438 * 9 8 7 41 41 H 0.97000 * 119.99566 * 179.97438 * 9 8 7 42 42 H 1.09004 * 109.67720 * 249.21614 * 14 13 11 43 43 H 1.09005 * 109.68104 * 9.76221 * 14 13 11 44 44 H 1.09007 * 109.65229 * 292.56820 * 15 14 13 45 45 H 1.08994 * 109.48393 * 172.39937 * 15 14 13 46 46 H 1.08994 * 109.47288 * 185.25564 * 19 17 16 47 47 H 1.09006 * 109.46783 * 305.25188 * 19 17 16 48 48 H 0.97003 * 119.99666 * 0.02562 * 20 19 17 49 49 H 0.97002 * 120.00042 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.67931 * 350.23737 * 29 13 11 51 51 H 1.08998 * 109.68113 * 110.78420 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.5938 -0.2715 2.1361 7 7 1.6701 -2.1371 1.1809 8 6 0.4545 -2.5371 1.6038 9 7 0.1122 -3.8390 1.5358 10 8 -0.3348 -1.7230 2.0424 11 6 3.5401 -0.5970 1.3238 12 8 4.2444 -1.4046 0.7557 13 7 4.0989 0.4114 2.0217 14 6 3.2693 1.4688 2.6209 15 6 3.6731 1.6163 4.0967 16 8 5.0888 1.7972 4.1796 17 6 5.8500 0.6890 3.6935 18 1 5.5735 -0.2118 4.2416 19 6 7.3414 0.9684 3.8890 20 7 7.6416 1.0391 5.3211 21 6 8.9221 1.2822 5.7412 22 1 9.7106 1.4222 5.0167 23 6 9.2065 1.3486 7.0982 24 7 8.2456 1.1774 7.9812 25 14 10.9531 1.6809 7.6713 26 1 11.1585 3.1450 7.8097 27 1 11.1770 1.0232 8.9838 28 1 11.9123 1.1383 6.6758 29 6 5.5572 0.4910 2.2020 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1295 1.4427 -0.0348 34 1 1.6486 1.9663 -0.8720 35 1 1.7054 1.9461 0.9069 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2490 39 1 2.3000 -2.7866 0.8312 40 1 0.7404 -4.4879 1.1822 41 1 -0.7625 -4.1270 1.8405 42 1 3.4372 2.4091 2.0957 43 1 2.2170 1.1927 2.5529 44 1 3.3879 0.7191 4.6462 45 1 3.1696 2.4820 4.5267 46 1 7.9239 0.1669 3.4348 47 1 7.5983 1.9167 3.4168 48 1 6.9332 0.9137 5.9718 49 1 8.4444 1.2235 8.9295 50 1 6.0207 -0.4329 1.8563 51 1 5.9516 1.3345 1.6353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484696768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:30 Heat of formation + Delta-G solvation = -88.126756 kcal Electronic energy + Delta-G solvation = -32195.113300 eV Core-core repulsion = 27937.477757 eV Total energy + Delta-G solvation = -4257.635543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44578 -39.91106 -38.55164 -37.05406 -35.18434 -34.48635 -34.23939 -33.26542 -32.25886 -30.29438 -28.72133 -27.73976 -27.46521 -27.06340 -25.26408 -23.54043 -22.54188 -21.59493 -21.00167 -20.11321 -19.11965 -18.67677 -17.67985 -17.21058 -17.03886 -16.47279 -16.45913 -16.03650 -15.44113 -15.21458 -15.00434 -14.56747 -14.52990 -14.41000 -14.15288 -13.95002 -13.78826 -13.22300 -13.16132 -13.09422 -12.71744 -12.61265 -12.36519 -12.25274 -12.17905 -11.78677 -11.63031 -11.56000 -11.19025 -11.06101 -10.98517 -10.87591 -10.80141 -10.58395 -10.49338 -10.10840 -9.95623 -9.94647 -9.86445 -9.68298 -9.30204 -8.86793 -8.61552 -6.89534 -5.72782 -3.01721 2.11460 2.44189 2.81997 2.94607 3.46171 3.50807 3.52673 3.90798 4.02583 4.14282 4.36870 4.46809 4.56871 4.69054 4.71799 4.82641 4.95909 5.07249 5.08344 5.17819 5.27225 5.35978 5.40010 5.46038 5.55287 5.59842 5.61294 5.65929 5.70024 5.70179 5.79681 5.84076 5.89528 5.91404 6.00968 6.08176 6.19232 6.19650 6.26302 6.36525 6.54140 6.58826 6.67944 7.08585 7.43683 7.60798 7.71911 7.82163 8.29583 8.45153 9.56877 10.13668 10.49337 11.49973 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002452 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.981355 B =11414.457443 C =11746.513703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.155 4.155 4 C -0.141 4.141 5 C 0.154 3.846 6 H 0.110 0.890 7 N -0.727 5.727 8 C 0.709 3.291 9 N -0.867 5.867 10 O -0.588 6.588 11 C 0.519 3.481 12 O -0.535 6.535 13 N -0.605 5.605 14 C 0.063 3.937 15 C 0.044 3.956 16 O -0.356 6.356 17 C 0.074 3.926 18 H 0.063 0.937 19 C 0.164 3.836 20 N -0.727 5.727 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.086 3.914 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.405 0.595 40 H 0.398 0.602 41 H 0.416 0.584 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.106 0.894 46 H 0.036 0.964 47 H 0.030 0.970 48 H 0.387 0.613 49 H 0.255 0.745 50 H 0.102 0.898 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.343 -5.762 -18.925 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 C -0.213 4.213 4 C -0.199 4.199 5 C 0.045 3.955 6 H 0.128 0.872 7 N -0.384 5.384 8 C 0.407 3.593 9 N -0.435 5.435 10 O -0.465 6.465 11 C 0.306 3.694 12 O -0.411 6.411 13 N -0.339 5.339 14 C -0.059 4.059 15 C -0.034 4.034 16 O -0.274 6.274 17 C 0.015 3.985 18 H 0.081 0.919 19 C 0.036 3.964 20 N -0.371 5.371 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.037 4.037 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.242 0.758 40 H 0.225 0.775 41 H 0.248 0.752 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.073 0.927 45 H 0.124 0.876 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.221 0.779 49 H 0.065 0.935 50 H 0.120 0.880 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.236 -5.195 -18.796 27.392 hybrid contribution 0.773 -0.800 0.332 1.161 sum -18.463 -5.995 -18.464 26.791 Atomic orbital electron populations 1.21876 0.92516 1.02723 1.01526 1.20903 0.97205 0.95295 0.94004 1.22209 1.01441 0.94752 1.02869 1.21865 1.01779 1.00107 0.96116 1.20819 0.91450 0.82357 1.00870 0.87199 1.44773 1.16179 1.08621 1.68861 1.15813 0.82046 0.82995 0.78401 1.42958 1.21677 1.07219 1.71623 1.90984 1.50981 1.52049 1.52533 1.20435 0.90013 0.80724 0.78181 1.90687 1.63656 1.41979 1.44809 1.48118 1.07984 1.25082 1.52681 1.22963 0.95692 0.91540 0.95746 1.23032 0.83828 1.02838 0.93725 1.88168 1.15289 1.40244 1.83717 1.22801 0.94290 0.89957 0.91465 0.91876 1.20610 0.88172 0.98765 0.88899 1.42231 1.08484 1.86599 0.99793 1.19217 0.86035 1.40847 0.90970 0.91132 1.24747 0.97569 1.02815 0.95835 1.69676 1.30967 1.56733 1.00648 0.86177 0.84219 0.77799 0.77914 1.21705 1.21806 1.20762 1.22386 0.79146 1.04317 0.97804 0.91909 0.93149 0.92069 0.92102 0.91675 0.91634 0.92562 0.92522 0.91841 0.75838 0.77462 0.75216 0.89618 0.88603 0.92724 0.87592 0.94693 0.95233 0.77908 0.93545 0.88006 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 7.09 37.16 0.26 -0.91 16 2 C -0.07 -0.63 0.62 -154.50 -0.10 -0.73 16 3 C -0.16 -1.23 6.76 37.16 0.25 -0.98 16 4 C -0.14 -1.24 7.99 37.16 0.30 -0.94 16 5 C 0.15 1.55 1.50 -69.08 -0.10 1.44 16 6 H 0.11 1.16 5.45 -51.93 -0.28 0.88 16 7 N -0.73 -6.68 4.01 -59.81 -0.24 -6.92 16 8 C 0.71 6.85 7.44 -86.91 -0.65 6.20 16 9 N -0.87 -4.97 8.88 27.64 0.25 -4.73 16 10 O -0.59 -7.59 14.32 5.29 0.08 -7.51 16 11 C 0.52 6.19 5.21 -10.99 -0.06 6.14 16 12 O -0.53 -7.58 14.56 5.56 0.08 -7.50 16 13 N -0.61 -7.16 2.58 -172.02 -0.44 -7.60 16 14 C 0.06 0.63 4.37 -3.31 -0.01 0.61 16 15 C 0.04 0.54 7.00 37.53 0.26 0.80 16 16 O -0.36 -6.07 10.33 -35.23 -0.36 -6.43 16 17 C 0.07 1.23 2.81 -26.58 -0.07 1.16 16 18 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 19 C 0.16 3.32 5.93 -4.05 -0.02 3.30 16 20 N -0.73 -18.90 5.55 -59.92 -0.33 -19.23 16 21 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 25 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 29 C 0.09 1.17 5.91 -3.54 -0.02 1.15 16 30 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.63 5.62 -51.93 -0.29 0.34 16 33 H 0.06 0.55 6.50 -51.93 -0.34 0.21 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.46 5.85 -51.93 -0.30 0.16 16 36 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.66 6.69 -51.93 -0.35 0.31 16 39 H 0.41 3.42 7.91 -40.82 -0.32 3.10 16 40 H 0.40 1.30 8.84 -40.82 -0.36 0.94 16 41 H 0.42 1.94 8.93 -40.82 -0.36 1.57 16 42 H 0.09 0.76 7.65 -51.93 -0.40 0.36 16 43 H 0.10 0.78 4.28 -51.93 -0.22 0.56 16 44 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 45 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.39 10.72 7.67 -40.82 -0.31 10.41 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.10 1.44 7.12 -51.93 -0.37 1.07 16 51 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -35.35 389.56 -7.68 -43.03 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -8.06 Total: 11.55 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -0.21 Total: 9.78 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -0.05 Total: -66.43 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.21 Total: -21.44 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.35 -7.68 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484696768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.094 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds