Wall clock time and date at job start Wed Apr 1 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.52998 * 109.47180 * 239.99518 * 2 1 3 5 5 C 1.53007 * 109.47025 * 119.99934 * 2 1 3 6 6 H 1.08995 * 109.46936 * 185.15118 * 5 2 1 7 7 N 1.46500 * 109.46671 * 305.15173 * 5 2 1 8 8 C 1.34774 * 119.99824 * 274.99550 * 7 5 2 9 9 N 1.34776 * 119.99841 * 180.02562 * 8 7 5 10 10 O 1.21584 * 120.00238 * 0.02562 * 8 7 5 11 11 C 1.50701 * 109.47000 * 65.14901 * 5 2 1 12 12 O 1.21280 * 119.99843 * 278.99527 * 11 5 2 13 13 N 1.34771 * 119.99989 * 98.99922 * 11 5 2 14 14 C 1.47156 * 120.98351 * 354.39840 * 13 11 5 15 15 C 1.53291 * 108.38765 * 230.56101 * 14 13 11 16 16 O 1.42971 * 109.21932 * 307.69724 * 15 14 13 17 17 C 1.42958 * 114.16860 * 62.58044 * 16 15 14 18 18 H 1.09004 * 109.50972 * 57.34051 * 17 16 15 19 19 C 1.52997 * 109.51540 * 177.44464 * 17 16 15 20 20 N 1.46504 * 109.46836 * 299.90141 * 19 17 16 21 21 C 1.36945 * 119.99854 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99573 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99795 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00510 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99938 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47237 * 59.99422 * 25 23 21 27 27 H 1.48500 * 109.47647 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47108 * 299.99625 * 25 23 21 29 29 C 1.47150 * 120.98136 * 174.42503 * 13 11 5 30 30 H 1.09001 * 109.47099 * 300.00331 * 1 2 3 31 31 H 1.09009 * 109.46871 * 59.99734 * 1 2 3 32 32 H 1.08996 * 109.47531 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47181 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46942 * 299.99635 * 3 2 1 35 35 H 1.09001 * 109.47278 * 59.99778 * 3 2 1 36 36 H 1.08995 * 109.47387 * 296.47793 * 4 2 1 37 37 H 1.09001 * 109.47192 * 56.47266 * 4 2 1 38 38 H 1.09000 * 109.47218 * 176.47312 * 4 2 1 39 39 H 0.97001 * 120.00232 * 95.00239 * 7 5 2 40 40 H 0.97001 * 120.00216 * 0.02562 * 9 8 7 41 41 H 0.97007 * 119.99632 * 180.02562 * 9 8 7 42 42 H 1.09000 * 109.67846 * 110.83323 * 14 13 11 43 43 H 1.08998 * 109.67900 * 350.28172 * 14 13 11 44 44 H 1.08994 * 109.51376 * 187.77523 * 15 14 13 45 45 H 1.09000 * 109.55690 * 67.63985 * 15 14 13 46 46 H 1.08997 * 109.46959 * 59.89475 * 19 17 16 47 47 H 1.09002 * 109.47653 * 179.90270 * 19 17 16 48 48 H 0.96997 * 120.00199 * 359.97438 * 20 19 17 49 49 H 0.96991 * 120.00386 * 180.02562 * 24 23 21 50 50 H 1.08994 * 109.68160 * 9.71844 * 29 13 11 51 51 H 1.09003 * 109.68082 * 249.16545 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 3.1260 -0.6420 1.2966 7 7 1.4529 -0.1059 2.4422 8 6 2.0290 0.9813 2.9924 9 7 1.4892 1.5471 4.0901 10 8 3.0355 1.4516 2.4985 11 6 1.6444 -2.1741 1.1872 12 8 0.5245 -2.5119 1.5073 13 7 2.5353 -3.0980 0.7760 14 6 3.8579 -2.7014 0.2673 15 6 4.0879 -3.3997 -1.0778 16 8 3.8614 -4.8029 -0.9245 17 6 2.5241 -5.1424 -0.5502 18 1 1.8276 -4.7473 -1.2897 19 6 2.3842 -6.6643 -0.4783 20 7 2.6839 -7.2447 -1.7896 21 6 2.6227 -8.6011 -1.9682 22 1 2.3539 -9.2428 -1.1423 23 6 2.9062 -9.1509 -3.2108 24 7 3.2333 -8.3687 -4.2176 25 14 2.8234 -11.0011 -3.4543 26 1 1.4494 -11.4787 -3.1556 27 1 3.1680 -11.3313 -4.8605 28 1 3.7877 -11.6643 -2.5402 29 6 2.2139 -4.5333 0.8220 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.7292 -1.7656 -1.2181 37 1 1.6260 -0.2454 -2.1381 38 1 3.1282 -0.6669 -1.2813 39 1 0.6498 -0.4809 2.8361 40 1 0.6864 1.1717 4.4843 41 1 1.9036 2.3298 4.4858 42 1 4.6294 -3.0046 0.9750 43 1 3.8893 -1.6206 0.1299 44 1 5.1136 -3.2301 -1.4054 45 1 3.3977 -2.9985 -1.8200 46 1 3.0810 -7.0586 0.2614 47 1 1.3648 -6.9224 -0.1911 48 1 2.9250 -6.6682 -2.5315 49 1 3.4310 -8.7529 -5.0859 50 1 1.1567 -4.6655 1.0518 51 1 2.8199 -5.0209 1.5855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484696770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:33 Heat of formation + Delta-G solvation = -89.003029 kcal Electronic energy + Delta-G solvation = -32310.593358 eV Core-core repulsion = 28052.919816 eV Total energy + Delta-G solvation = -4257.673542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45100 -39.93933 -38.54269 -37.02300 -35.17072 -34.44758 -34.29028 -33.29967 -32.26281 -30.29209 -28.74158 -27.73698 -27.41620 -26.95634 -25.24890 -23.54440 -22.56331 -21.62500 -20.99303 -20.03583 -19.14847 -18.70301 -17.72253 -17.23199 -16.99205 -16.56498 -16.35257 -15.97676 -15.49508 -15.15967 -14.92220 -14.68986 -14.57561 -14.45483 -14.11232 -13.99132 -13.68600 -13.19182 -13.13833 -13.07337 -12.69529 -12.54725 -12.38140 -12.21565 -12.14223 -11.78639 -11.58956 -11.54681 -11.17257 -11.05450 -10.92419 -10.89423 -10.77352 -10.59622 -10.49221 -10.11336 -9.99598 -9.91218 -9.87613 -9.66893 -9.32713 -8.85268 -8.60362 -6.88312 -5.71737 -3.00554 2.08377 2.42652 2.80033 2.94504 3.47130 3.51076 3.52340 3.91852 4.02981 4.11614 4.40217 4.50531 4.58150 4.71042 4.75159 4.86020 4.98318 5.05177 5.10758 5.19326 5.28057 5.40147 5.43224 5.51424 5.60202 5.61246 5.62201 5.68355 5.71908 5.75990 5.83404 5.87210 5.90058 5.96208 6.04966 6.11639 6.19478 6.22990 6.27510 6.33341 6.54694 6.54720 6.68646 7.09107 7.44371 7.57059 7.72154 7.82214 8.25945 8.46422 9.58077 10.15151 10.51167 11.50959 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.002406 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.006244 B =11636.996615 C =11874.707108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.128 4.128 4 C -0.155 4.155 5 C 0.155 3.845 6 H 0.109 0.891 7 N -0.727 5.727 8 C 0.709 3.291 9 N -0.867 5.867 10 O -0.587 6.587 11 C 0.519 3.481 12 O -0.533 6.533 13 N -0.605 5.605 14 C 0.062 3.938 15 C 0.045 3.955 16 O -0.355 6.355 17 C 0.074 3.926 18 H 0.063 0.937 19 C 0.164 3.836 20 N -0.725 5.725 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.084 3.916 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.405 0.595 40 H 0.397 0.603 41 H 0.415 0.585 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.057 0.943 46 H 0.028 0.972 47 H 0.035 0.965 48 H 0.388 0.612 49 H 0.255 0.745 50 H 0.103 0.897 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 23.390 14.646 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.186 4.186 4 C -0.212 4.212 5 C 0.046 3.954 6 H 0.127 0.873 7 N -0.384 5.384 8 C 0.407 3.593 9 N -0.435 5.435 10 O -0.465 6.465 11 C 0.306 3.694 12 O -0.410 6.410 13 N -0.339 5.339 14 C -0.061 4.061 15 C -0.033 4.033 16 O -0.272 6.272 17 C 0.015 3.985 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.370 5.370 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.038 4.038 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.240 0.760 40 H 0.225 0.775 41 H 0.248 0.752 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.222 0.778 49 H 0.065 0.935 50 H 0.121 0.879 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.981 23.151 14.279 27.363 hybrid contribution -0.655 -0.642 0.197 0.938 sum -3.636 22.509 14.475 27.007 Atomic orbital electron populations 1.21886 0.93525 1.02999 1.01590 1.20895 0.96990 0.96532 0.92983 1.21872 1.01568 0.93653 1.01468 1.22172 1.01374 1.00648 0.97028 1.20850 1.00071 0.88728 0.85792 0.87303 1.44775 1.32017 1.31004 1.30598 1.15814 0.82945 0.80185 0.80342 1.42965 1.33426 1.35814 1.31316 1.90988 1.26123 1.65082 1.64303 1.20448 0.84796 0.87278 0.76872 1.90689 1.19671 1.81579 1.49013 1.48123 1.15535 1.06906 1.63343 1.22757 0.84476 1.01108 0.97766 1.22973 1.02804 0.83173 0.94399 1.88183 1.28876 1.20931 1.89250 1.22789 0.84400 0.97713 0.93582 0.91880 1.20619 0.98050 0.86863 0.90930 1.42198 1.83327 1.04833 1.06631 1.19174 1.39327 0.83318 0.95296 0.91225 1.24739 1.02439 0.97758 0.96000 1.69661 1.53342 1.33673 1.01351 0.86258 0.77723 0.85372 0.76752 1.21292 1.21716 1.21274 1.22400 1.03606 0.78813 0.98994 0.92677 0.92522 0.91472 0.91926 0.93082 0.92196 0.92101 0.91401 0.91828 0.75951 0.77486 0.75231 0.90052 0.88554 0.87604 0.92451 0.95396 0.94740 0.77809 0.93503 0.87922 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 7.95 37.16 0.30 -1.08 16 2 C -0.07 -0.68 0.62 -154.51 -0.10 -0.78 16 3 C -0.13 -1.22 7.08 37.16 0.26 -0.95 16 4 C -0.15 -1.43 6.50 37.16 0.24 -1.19 16 5 C 0.15 1.54 1.48 -69.08 -0.10 1.44 16 6 H 0.11 1.12 5.49 -51.93 -0.28 0.83 16 7 N -0.73 -6.33 4.03 -59.81 -0.24 -6.58 16 8 C 0.71 6.45 7.41 -86.92 -0.64 5.80 16 9 N -0.87 -4.39 8.88 27.63 0.25 -4.14 16 10 O -0.59 -7.31 14.31 5.29 0.08 -7.23 16 11 C 0.52 6.17 5.09 -10.99 -0.06 6.12 16 12 O -0.53 -7.52 14.26 5.56 0.08 -7.44 16 13 N -0.61 -7.21 2.65 -172.28 -0.46 -7.67 16 14 C 0.06 0.63 5.27 -3.53 -0.02 0.61 16 15 C 0.04 0.54 6.94 37.31 0.26 0.80 16 16 O -0.35 -6.04 10.14 -35.23 -0.36 -6.39 16 17 C 0.07 1.23 2.86 -26.58 -0.08 1.15 16 18 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.16 3.31 5.96 -4.04 -0.02 3.29 16 20 N -0.73 -18.82 5.50 -59.91 -0.33 -19.14 16 21 C -0.24 -6.82 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 25 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 C 0.08 1.15 5.94 -3.53 -0.02 1.13 16 30 H 0.05 0.50 7.47 -51.93 -0.39 0.11 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.06 0.64 7.85 -51.93 -0.41 0.23 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.62 5.64 -51.93 -0.29 0.33 16 36 H 0.06 0.66 5.69 -51.93 -0.30 0.37 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.51 6.62 -51.93 -0.34 0.17 16 39 H 0.40 3.18 8.03 -40.82 -0.33 2.85 16 40 H 0.40 1.01 8.84 -40.82 -0.36 0.65 16 41 H 0.42 1.66 8.93 -40.82 -0.36 1.29 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.80 3.76 -51.93 -0.20 0.60 16 44 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.68 6.82 -51.93 -0.35 0.33 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.39 10.71 7.55 -40.82 -0.31 10.40 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.10 1.44 7.06 -51.93 -0.37 1.07 16 51 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -35.21 387.88 -7.64 -42.85 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.97 Total: 11.30 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -0.23 Total: 8.88 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.06 Total: -65.42 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.20 Total: -21.07 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.21 -7.64 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484696770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.158 kcal (2) G-P(sol) polarization free energy of solvation -35.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds