Wall clock time and date at job start Wed Apr 1 2020 01:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.52998 * 109.47180 * 239.99518 * 2 1 3 5 5 C 1.53007 * 109.47025 * 119.99934 * 2 1 3 6 6 H 1.08995 * 109.46936 * 185.15118 * 5 2 1 7 7 N 1.46500 * 109.46671 * 305.15173 * 5 2 1 8 8 C 1.34774 * 119.99824 * 274.99550 * 7 5 2 9 9 N 1.34776 * 119.99841 * 180.02562 * 8 7 5 10 10 O 1.21584 * 120.00238 * 0.02562 * 8 7 5 11 11 C 1.50701 * 109.47000 * 65.14901 * 5 2 1 12 12 O 1.21280 * 119.99843 * 278.99527 * 11 5 2 13 13 N 1.34771 * 119.99989 * 98.99922 * 11 5 2 14 14 C 1.47156 * 120.98351 * 354.39840 * 13 11 5 15 15 C 1.53291 * 108.38765 * 230.56101 * 14 13 11 16 16 O 1.42971 * 109.21932 * 307.69724 * 15 14 13 17 17 C 1.42958 * 114.16860 * 62.58044 * 16 15 14 18 18 H 1.09004 * 109.50972 * 57.34051 * 17 16 15 19 19 C 1.52997 * 109.51540 * 177.44464 * 17 16 15 20 20 N 1.46504 * 109.46836 * 299.90141 * 19 17 16 21 21 C 1.36945 * 119.99854 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99573 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99795 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00510 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99938 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47237 * 59.99422 * 25 23 21 27 27 H 1.48500 * 109.47647 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47108 * 299.99625 * 25 23 21 29 29 C 1.47150 * 120.98136 * 174.42503 * 13 11 5 30 30 H 1.09001 * 109.47099 * 300.00331 * 1 2 3 31 31 H 1.09009 * 109.46871 * 59.99734 * 1 2 3 32 32 H 1.08996 * 109.47531 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47181 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46942 * 299.99635 * 3 2 1 35 35 H 1.09001 * 109.47278 * 59.99778 * 3 2 1 36 36 H 1.08995 * 109.47387 * 296.47793 * 4 2 1 37 37 H 1.09001 * 109.47192 * 56.47266 * 4 2 1 38 38 H 1.09000 * 109.47218 * 176.47312 * 4 2 1 39 39 H 0.97001 * 120.00232 * 95.00239 * 7 5 2 40 40 H 0.97001 * 120.00216 * 0.02562 * 9 8 7 41 41 H 0.97007 * 119.99632 * 180.02562 * 9 8 7 42 42 H 1.09000 * 109.67846 * 110.83323 * 14 13 11 43 43 H 1.08998 * 109.67900 * 350.28172 * 14 13 11 44 44 H 1.08994 * 109.51376 * 187.77523 * 15 14 13 45 45 H 1.09000 * 109.55690 * 67.63985 * 15 14 13 46 46 H 1.08997 * 109.46959 * 59.89475 * 19 17 16 47 47 H 1.09002 * 109.47653 * 179.90270 * 19 17 16 48 48 H 0.96997 * 120.00199 * 359.97438 * 20 19 17 49 49 H 0.96991 * 120.00386 * 180.02562 * 24 23 21 50 50 H 1.08994 * 109.68160 * 9.71844 * 29 13 11 51 51 H 1.09003 * 109.68082 * 249.16545 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 3.1260 -0.6420 1.2966 7 7 1.4529 -0.1059 2.4422 8 6 2.0290 0.9813 2.9924 9 7 1.4892 1.5471 4.0901 10 8 3.0355 1.4516 2.4985 11 6 1.6444 -2.1741 1.1872 12 8 0.5245 -2.5119 1.5073 13 7 2.5353 -3.0980 0.7760 14 6 3.8579 -2.7014 0.2673 15 6 4.0879 -3.3997 -1.0778 16 8 3.8614 -4.8029 -0.9245 17 6 2.5241 -5.1424 -0.5502 18 1 1.8276 -4.7473 -1.2897 19 6 2.3842 -6.6643 -0.4783 20 7 2.6839 -7.2447 -1.7896 21 6 2.6227 -8.6011 -1.9682 22 1 2.3539 -9.2428 -1.1423 23 6 2.9062 -9.1509 -3.2108 24 7 3.2333 -8.3687 -4.2176 25 14 2.8234 -11.0011 -3.4543 26 1 1.4494 -11.4787 -3.1556 27 1 3.1680 -11.3313 -4.8605 28 1 3.7877 -11.6643 -2.5402 29 6 2.2139 -4.5333 0.8220 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.7292 -1.7656 -1.2181 37 1 1.6260 -0.2454 -2.1381 38 1 3.1282 -0.6669 -1.2813 39 1 0.6498 -0.4809 2.8361 40 1 0.6864 1.1717 4.4843 41 1 1.9036 2.3298 4.4858 42 1 4.6294 -3.0046 0.9750 43 1 3.8893 -1.6206 0.1299 44 1 5.1136 -3.2301 -1.4054 45 1 3.3977 -2.9985 -1.8200 46 1 3.0810 -7.0586 0.2614 47 1 1.3648 -6.9224 -0.1911 48 1 2.9250 -6.6682 -2.5315 49 1 3.4310 -8.7529 -5.0859 50 1 1.1567 -4.6655 1.0518 51 1 2.8199 -5.0209 1.5855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484696770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:32 Heat of formation + Delta-G solvation = -117.766884 kcal Electronic energy + Delta-G solvation = -32311.840652 eV Core-core repulsion = 28052.919816 eV Total energy + Delta-G solvation = -4258.920836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.32681 -40.81964 -39.61270 -37.86416 -36.68436 -35.83026 -35.02761 -33.94699 -33.90558 -31.97370 -29.71698 -28.85937 -28.19013 -27.85545 -26.68405 -24.91540 -24.02438 -22.41825 -22.30291 -20.97638 -19.88697 -19.48052 -19.20580 -18.40947 -18.04871 -17.64882 -17.21893 -17.02868 -16.62264 -16.34675 -16.05464 -15.84056 -15.73783 -15.39700 -15.19113 -15.00281 -14.84801 -14.60568 -14.41334 -14.16435 -13.96306 -13.80107 -13.44005 -13.17678 -12.99842 -12.92355 -12.75786 -12.66410 -12.51520 -12.31936 -12.28591 -12.08290 -11.97421 -11.87226 -11.72955 -11.61835 -11.37070 -11.14356 -10.93104 -10.81846 -10.59306 -10.05442 -9.65857 -8.99289 -7.92582 -5.22012 1.21806 1.47945 1.51439 1.52130 1.58129 2.06616 2.20700 2.57523 2.74933 3.16310 3.40934 3.51825 3.57108 3.65870 3.72561 3.88103 3.92310 4.01251 4.03366 4.12883 4.25010 4.29881 4.41688 4.43837 4.49766 4.63826 4.67194 4.74144 4.77546 4.82923 4.85450 4.94682 4.97499 4.99919 5.09419 5.09953 5.15324 5.21273 5.31840 5.36371 5.46630 5.49338 5.81386 6.06015 6.14963 6.23642 6.29384 6.86046 7.00926 7.35022 7.63972 8.09458 8.33994 9.30905 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.002406 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.006244 B =11636.996615 C =11874.707108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.119 4.119 4 C -0.154 4.154 5 C 0.161 3.839 6 H 0.110 0.890 7 N -0.723 5.723 8 C 0.706 3.294 9 N -0.848 5.848 10 O -0.621 6.621 11 C 0.521 3.479 12 O -0.556 6.556 13 N -0.606 5.606 14 C 0.067 3.933 15 C 0.038 3.962 16 O -0.385 6.385 17 C 0.087 3.913 18 H 0.049 0.951 19 C 0.160 3.840 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.977 3.023 26 H -0.276 1.276 27 H -0.295 1.295 28 H -0.277 1.277 29 C 0.096 3.904 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.410 0.590 40 H 0.412 0.588 41 H 0.423 0.577 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.057 0.943 46 H 0.030 0.970 47 H 0.043 0.957 48 H 0.376 0.624 49 H 0.251 0.749 50 H 0.098 0.902 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 24.313 15.992 29.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 C -0.176 4.176 4 C -0.212 4.212 5 C 0.051 3.949 6 H 0.128 0.872 7 N -0.380 5.380 8 C 0.404 3.596 9 N -0.418 5.418 10 O -0.502 6.502 11 C 0.309 3.691 12 O -0.434 6.434 13 N -0.339 5.339 14 C -0.055 4.055 15 C -0.039 4.039 16 O -0.304 6.304 17 C 0.029 3.971 18 H 0.067 0.933 19 C 0.033 3.967 20 N -0.382 5.382 21 C -0.379 4.379 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.805 3.195 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.204 1.204 29 C -0.028 4.028 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.242 0.758 41 H 0.256 0.744 42 H 0.111 0.889 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.116 0.884 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.001 24.097 15.706 28.920 hybrid contribution -0.681 -0.852 -0.162 1.103 sum -3.681 23.245 15.543 28.204 Atomic orbital electron populations 1.21833 0.93684 1.01772 1.02244 1.20873 0.96782 0.96583 0.92771 1.21765 1.01083 0.93315 1.01462 1.22170 1.02270 0.99480 0.97236 1.20762 1.00146 0.87333 0.86614 0.87197 1.44691 1.32087 1.30974 1.30283 1.15958 0.82649 0.80091 0.80912 1.42802 1.33539 1.35510 1.29920 1.90966 1.27680 1.66011 1.65511 1.20769 0.84277 0.87917 0.76110 1.90679 1.20670 1.82034 1.50057 1.48150 1.16262 1.06131 1.63357 1.22827 0.83767 1.02115 0.96758 1.23238 1.04012 0.80928 0.95677 1.88120 1.28607 1.24029 1.89619 1.22466 0.84405 0.95307 0.94971 0.93282 1.20773 0.98173 0.89390 0.88352 1.42392 1.83382 1.04168 1.08301 1.19624 1.38045 0.84698 0.95532 0.90430 1.25608 1.03000 1.02392 0.95887 1.69830 1.55044 1.35507 1.01606 0.85172 0.78104 0.79913 0.76309 1.20250 1.22153 1.20352 1.22137 1.03484 0.80002 0.97136 0.92128 0.91808 0.93522 0.92495 0.92178 0.93029 0.93885 0.90801 0.90531 0.75376 0.75818 0.74351 0.88918 0.86387 0.85610 0.92472 0.95209 0.93898 0.79263 0.94017 0.88364 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.95 71.98 0.57 -1.95 16 2 C -0.07 -1.19 0.62 -52.18 -0.03 -1.22 16 3 C -0.12 -2.05 7.08 71.98 0.51 -1.55 16 4 C -0.15 -2.65 6.50 71.98 0.47 -2.18 16 5 C 0.16 2.98 1.48 44.25 0.07 3.04 16 6 H 0.11 2.05 5.49 -2.39 -0.01 2.03 16 7 N -0.72 -11.50 4.03 -461.41 -1.86 -13.36 16 8 C 0.71 11.65 7.41 179.06 1.33 12.98 16 9 N -0.85 -6.88 8.88 -184.75 -1.64 -8.52 16 10 O -0.62 -14.56 14.31 -3.98 -0.06 -14.61 16 11 C 0.52 11.85 5.09 87.66 0.45 12.30 16 12 O -0.56 -15.36 14.26 -3.03 -0.04 -15.40 16 13 N -0.61 -13.76 2.65 -817.36 -2.17 -15.93 16 14 C 0.07 1.25 5.27 86.35 0.46 1.70 16 15 C 0.04 0.89 6.94 72.08 0.50 1.39 16 16 O -0.38 -13.06 10.14 -148.98 -1.51 -14.57 16 17 C 0.09 2.92 2.86 30.69 0.09 3.00 16 18 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 19 C 0.16 6.52 5.96 86.38 0.51 7.03 16 20 N -0.74 -38.97 5.50 -343.45 -1.89 -40.86 16 21 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 22 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 23 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 24 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 25 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 29 C 0.10 2.55 5.94 86.35 0.51 3.06 16 30 H 0.06 1.02 7.47 -2.39 -0.02 1.00 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.05 1.06 6.44 -2.39 -0.02 1.04 16 33 H 0.06 1.06 7.85 -2.38 -0.02 1.04 16 34 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.05 0.99 5.64 -2.39 -0.01 0.98 16 36 H 0.04 0.91 5.69 -2.39 -0.01 0.89 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.09 6.62 -2.39 -0.02 1.07 16 39 H 0.41 5.82 8.03 -92.71 -0.74 5.08 16 40 H 0.41 1.17 8.84 -92.71 -0.82 0.35 16 41 H 0.42 2.52 8.93 -92.70 -0.83 1.69 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.12 1.69 3.76 -2.39 -0.01 1.68 16 44 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.06 1.32 6.82 -2.39 -0.02 1.31 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 48 H 0.38 21.31 7.55 -92.71 -0.70 20.61 16 49 H 0.25 15.18 8.31 -92.72 -0.77 14.41 16 50 H 0.10 2.72 7.06 -2.39 -0.02 2.70 16 51 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -75.94 387.88 -2.21 -78.15 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -2.09 Total: 36.33 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 6.73 Total: 20.30 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -7.27 Total: -138.97 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.61 Total: -44.58 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -75.94 -2.21 -78.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484696770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.615 kcal (2) G-P(sol) polarization free energy of solvation -75.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds