Wall clock time and date at job start Wed Apr 1 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47419 * 2 1 4 4 C 1.52998 * 109.46772 * 239.99833 * 2 1 3 5 5 C 1.53002 * 109.46933 * 120.00612 * 2 1 3 6 6 H 1.09008 * 109.47029 * 174.16085 * 5 2 1 7 7 N 1.46497 * 109.47444 * 54.15807 * 5 2 1 8 8 C 1.34785 * 119.99824 * 85.00099 * 7 5 2 9 9 N 1.34772 * 119.99813 * 179.72309 * 8 7 5 10 10 O 1.21587 * 119.99867 * 359.72684 * 8 7 5 11 11 C 1.50701 * 109.47050 * 294.15679 * 5 2 1 12 12 O 1.21281 * 119.99849 * 87.29654 * 11 5 2 13 13 N 1.34774 * 119.99900 * 267.29733 * 11 5 2 14 14 C 1.47148 * 120.98388 * 4.80616 * 13 11 5 15 15 C 1.52882 * 108.60917 * 230.50268 * 14 13 11 16 16 O 1.42965 * 109.29710 * 307.93645 * 15 14 13 17 17 C 1.42955 * 114.16530 * 62.45050 * 16 15 14 18 18 H 1.08994 * 109.51922 * 57.34080 * 17 16 15 19 19 C 1.53002 * 109.55448 * 177.46864 * 17 16 15 20 20 N 1.46504 * 109.47029 * 299.77140 * 19 17 16 21 21 C 1.36934 * 119.99879 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99852 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00118 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99756 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00407 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46536 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.46717 * 119.99968 * 25 23 21 28 28 H 1.48494 * 109.47101 * 240.00427 * 25 23 21 29 29 C 1.47160 * 120.98138 * 185.09446 * 13 11 5 30 30 H 1.09001 * 109.46681 * 299.99886 * 1 2 3 31 31 H 1.09000 * 109.46817 * 59.99592 * 1 2 3 32 32 H 1.08996 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47338 * 178.17654 * 3 2 1 34 34 H 1.08997 * 109.47662 * 298.18383 * 3 2 1 35 35 H 1.09009 * 109.46839 * 58.18382 * 3 2 1 36 36 H 1.08996 * 109.47719 * 300.00219 * 4 2 1 37 37 H 1.09000 * 109.46980 * 60.00674 * 4 2 1 38 38 H 1.09002 * 109.47064 * 179.97438 * 4 2 1 39 39 H 0.96989 * 120.00139 * 264.72535 * 7 5 2 40 40 H 0.97002 * 119.99950 * 0.02562 * 9 8 7 41 41 H 0.97003 * 120.00117 * 179.97438 * 9 8 7 42 42 H 1.08997 * 109.68322 * 350.28452 * 14 13 11 43 43 H 1.09004 * 109.68292 * 110.84058 * 14 13 11 44 44 H 1.08999 * 109.58118 * 187.92739 * 15 14 13 45 45 H 1.08993 * 109.36882 * 67.81997 * 15 14 13 46 46 H 1.09005 * 109.47112 * 59.76728 * 19 17 16 47 47 H 1.09002 * 109.47293 * 179.76949 * 19 17 16 48 48 H 0.97000 * 120.00019 * 359.97438 * 20 19 17 49 49 H 0.96999 * 119.99800 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.67756 * 249.16285 * 29 13 11 51 51 H 1.08995 * 109.67925 * 9.71154 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7214 1.2492 6 1 3.1250 -0.8128 1.1985 7 7 1.4402 -2.0560 1.3215 8 6 2.0024 -3.0844 0.6558 9 7 1.4539 -4.3134 0.7268 10 8 3.0045 -2.9033 -0.0086 11 6 1.6592 0.0675 2.4755 12 8 0.5815 -0.1125 3.0018 13 7 2.5163 0.9730 2.9872 14 6 3.7838 1.2846 2.3079 15 6 4.9203 1.1836 3.3254 16 8 4.6012 1.9777 4.4706 17 6 3.4304 1.5508 5.1710 18 1 3.5489 0.5120 5.4790 19 6 3.2236 2.4296 6.4062 20 7 4.3856 2.3105 7.2904 21 6 4.4263 3.0118 8.4658 22 1 3.6015 3.6525 8.7412 23 6 5.5270 2.8986 9.3039 24 7 6.5318 2.1174 8.9685 25 14 5.5829 3.8559 10.9070 26 1 4.3396 4.6552 11.0497 27 1 5.6954 2.9088 12.0453 28 1 6.7578 4.7640 10.9006 29 6 2.2150 1.6748 4.2451 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1296 1.4426 0.0327 34 1 1.7036 1.9468 -0.9058 35 1 1.6503 1.9656 0.8733 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1299 -0.7209 -1.2495 39 1 0.6410 -2.2005 1.8515 40 1 0.6543 -4.4578 1.2567 41 1 1.8583 -5.0534 0.2474 42 1 3.9518 0.5728 1.4997 43 1 3.7450 2.2965 1.9044 44 1 5.8453 1.5463 2.8772 45 1 5.0443 0.1435 3.6267 46 1 3.1069 3.4686 6.0975 47 1 2.3283 2.1056 6.9369 48 1 5.1261 1.7348 7.0432 49 1 7.3008 2.0380 9.5543 50 1 2.0155 2.7266 4.0399 51 1 1.3446 1.2212 4.7191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484696772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:36 Heat of formation + Delta-G solvation = -87.914043 kcal Electronic energy + Delta-G solvation = -32203.438174 eV Core-core repulsion = 27945.811854 eV Total energy + Delta-G solvation = -4257.626320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45100 -39.91999 -38.56169 -37.05585 -35.19136 -34.47577 -34.24049 -33.26699 -32.27504 -30.30337 -28.74998 -27.74034 -27.46437 -27.07079 -25.26219 -23.51887 -22.55163 -21.59770 -20.98602 -20.10997 -19.11946 -18.68078 -17.68750 -17.20789 -17.03871 -16.48513 -16.44956 -16.03995 -15.44049 -15.22139 -15.00873 -14.57289 -14.53145 -14.41376 -14.15899 -13.94805 -13.78713 -13.22402 -13.16123 -13.09594 -12.71103 -12.62528 -12.36503 -12.24994 -12.17147 -11.78564 -11.61686 -11.55550 -11.18833 -11.06091 -10.97656 -10.88675 -10.80832 -10.58425 -10.49296 -10.09193 -9.95672 -9.92062 -9.86631 -9.68151 -9.30427 -8.86928 -8.62084 -6.88888 -5.72545 -3.01333 2.11028 2.44109 2.82099 2.93703 3.45811 3.51054 3.53570 3.90782 4.02381 4.13994 4.36984 4.46901 4.57325 4.70935 4.72081 4.82472 4.96661 5.07274 5.08597 5.18005 5.26916 5.36350 5.40221 5.46226 5.55645 5.59889 5.61379 5.66236 5.70230 5.70579 5.79841 5.83831 5.89724 5.91753 6.00999 6.08323 6.19307 6.19806 6.26836 6.36211 6.53834 6.58543 6.67968 7.08376 7.43696 7.60522 7.72601 7.81824 8.29318 8.45481 9.57356 10.14395 10.50327 11.50258 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.002443 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.704156 B =11459.247908 C =11758.188740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.155 4.155 4 C -0.129 4.129 5 C 0.154 3.846 6 H 0.110 0.890 7 N -0.727 5.727 8 C 0.709 3.291 9 N -0.867 5.867 10 O -0.587 6.587 11 C 0.520 3.480 12 O -0.535 6.535 13 N -0.604 5.604 14 C 0.063 3.937 15 C 0.044 3.956 16 O -0.355 6.355 17 C 0.074 3.926 18 H 0.062 0.938 19 C 0.164 3.836 20 N -0.726 5.726 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.086 3.914 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.405 0.595 40 H 0.398 0.602 41 H 0.416 0.584 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.029 0.971 47 H 0.035 0.965 48 H 0.388 0.612 49 H 0.254 0.746 50 H 0.080 0.920 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.158 -9.200 -23.144 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.213 4.213 4 C -0.186 4.186 5 C 0.045 3.955 6 H 0.128 0.872 7 N -0.384 5.384 8 C 0.407 3.593 9 N -0.435 5.435 10 O -0.465 6.465 11 C 0.307 3.693 12 O -0.412 6.412 13 N -0.338 5.338 14 C -0.059 4.059 15 C -0.035 4.035 16 O -0.272 6.272 17 C 0.015 3.985 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.370 5.370 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.037 4.037 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.242 0.758 40 H 0.225 0.775 41 H 0.248 0.752 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.222 0.778 49 H 0.064 0.936 50 H 0.098 0.902 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.829 -8.701 -23.169 27.431 hybrid contribution -0.338 -0.383 1.018 1.139 sum -12.167 -9.083 -22.151 26.855 Atomic orbital electron populations 1.21863 0.93648 1.02111 1.02234 1.20898 0.96848 0.95474 0.94168 1.22206 1.01635 0.94682 1.02743 1.21876 1.01634 1.00157 0.94965 1.20821 0.99971 0.81984 0.92723 0.87210 1.44772 1.32473 1.07145 1.54045 1.15814 0.82860 0.80617 0.79979 1.42959 1.33819 1.09596 1.57100 1.90986 1.26341 1.83567 1.45640 1.20431 0.84253 0.79803 0.84851 1.90686 1.21957 1.66757 1.61756 1.48110 1.20069 1.40986 1.24643 1.22788 0.83946 1.02776 0.96432 1.22883 0.96983 0.96579 0.87011 1.88179 1.44627 1.54195 1.40248 1.22796 0.84019 0.99602 0.92117 0.91969 1.20620 0.92216 0.96198 0.87402 1.42220 1.18689 1.55329 1.20812 1.19266 1.02120 1.19873 0.95739 0.91100 1.24748 0.96776 1.00341 0.99139 1.69687 1.08349 1.41870 1.38060 0.86109 0.77282 0.79155 0.83601 1.20551 1.21921 1.21864 1.22395 0.99723 0.97775 0.83789 0.91854 0.92530 0.92558 0.91639 0.91682 0.92089 0.92057 0.93168 0.91910 0.75842 0.77463 0.75213 0.88612 0.89642 0.87502 0.92827 0.95331 0.94731 0.77815 0.93607 0.90166 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.00 37.16 0.30 -0.94 16 2 C -0.07 -0.63 0.62 -154.51 -0.10 -0.73 16 3 C -0.16 -1.24 6.76 37.15 0.25 -0.98 16 4 C -0.13 -1.17 7.09 37.16 0.26 -0.91 16 5 C 0.15 1.54 1.50 -69.08 -0.10 1.44 16 6 H 0.11 1.16 5.44 -51.92 -0.28 0.88 16 7 N -0.73 -6.64 4.01 -59.81 -0.24 -6.88 16 8 C 0.71 6.82 7.45 -86.92 -0.65 6.17 16 9 N -0.87 -4.93 8.88 27.63 0.25 -4.69 16 10 O -0.59 -7.57 14.30 5.29 0.08 -7.49 16 11 C 0.52 6.18 5.21 -10.99 -0.06 6.12 16 12 O -0.53 -7.55 14.57 5.56 0.08 -7.47 16 13 N -0.60 -7.15 2.57 -172.53 -0.44 -7.59 16 14 C 0.06 0.63 4.31 -3.75 -0.02 0.61 16 15 C 0.04 0.54 6.97 37.10 0.26 0.80 16 16 O -0.35 -6.08 10.15 -35.23 -0.36 -6.44 16 17 C 0.07 1.23 2.86 -26.58 -0.08 1.15 16 18 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 19 C 0.16 3.32 5.96 -4.04 -0.02 3.30 16 20 N -0.73 -18.88 5.50 -59.90 -0.33 -19.21 16 21 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 25 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 C 0.09 1.17 5.91 -3.53 -0.02 1.15 16 30 H 0.06 0.66 6.70 -51.93 -0.35 0.31 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 33 H 0.06 0.46 5.87 -51.93 -0.30 0.16 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 6.48 -51.92 -0.34 0.22 16 36 H 0.06 0.63 5.62 -51.93 -0.29 0.34 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 39 H 0.41 3.40 7.90 -40.82 -0.32 3.08 16 40 H 0.40 1.28 8.84 -40.82 -0.36 0.92 16 41 H 0.42 1.92 8.93 -40.82 -0.36 1.55 16 42 H 0.10 0.78 4.31 -51.93 -0.22 0.56 16 43 H 0.09 0.77 7.63 -51.93 -0.40 0.37 16 44 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.39 10.75 7.55 -40.82 -0.31 10.45 16 49 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.10 1.42 7.12 -51.93 -0.37 1.05 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -35.37 389.20 -7.68 -43.05 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.06 Total: 11.44 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.22 Total: 9.72 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.04 Total: -66.31 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.20 Total: -21.40 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.37 -7.68 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484696772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.861 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds