Wall clock time and date at job start Wed Apr 1 2020 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47451 * 184.99880 * 6 4 2 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 4 9 9 C 1.34777 * 120.00097 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99903 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00178 * 179.97438 * 9 8 7 12 12 H 1.09007 * 115.53838 * 325.58419 * 11 9 8 13 13 C 1.52958 * 117.48140 * 111.17056 * 11 9 8 14 14 H 1.08996 * 118.97270 * 356.70401 * 13 11 9 15 15 C 1.50939 * 118.98423 * 201.35665 * 13 11 9 16 16 C 1.38800 * 129.72517 * 114.99207 * 15 13 11 17 17 C 1.38014 * 120.31551 * 179.97438 * 16 15 13 18 18 C 1.38254 * 119.88455 * 359.97438 * 17 16 15 19 19 C 1.38016 * 119.87907 * 0.03675 * 18 17 16 20 20 C 1.37804 * 110.48172 * 294.97350 * 15 13 11 21 21 C 1.53648 * 110.76016 * 0.65795 * 20 15 13 22 22 C 1.53042 * 117.48149 * 179.97438 * 11 9 8 23 23 H 1.08999 * 119.40978 * 4.09665 * 22 11 9 24 24 N 1.46500 * 109.47473 * 299.99988 * 4 2 1 25 25 C 1.36939 * 119.99792 * 84.99599 * 24 4 2 26 26 H 1.08001 * 119.99680 * 0.02562 * 25 24 4 27 27 C 1.38809 * 119.99850 * 179.97438 * 25 24 4 28 28 N 1.31613 * 120.00225 * 0.02562 * 27 25 24 29 29 Si 1.86799 * 120.00107 * 180.02562 * 27 25 24 30 30 H 1.48504 * 109.47389 * 60.00084 * 29 27 25 31 31 H 1.48497 * 109.47307 * 180.02562 * 29 27 25 32 32 H 1.48503 * 109.47026 * 300.00519 * 29 27 25 33 33 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 34 34 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 36 36 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 37 37 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 38 38 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 39 39 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 40 40 H 1.08998 * 109.47565 * 305.00629 * 6 4 2 41 41 H 1.09000 * 109.46738 * 65.00110 * 6 4 2 42 42 H 1.08996 * 109.47443 * 300.00108 * 7 6 4 43 43 H 1.09000 * 109.46961 * 60.00367 * 7 6 4 44 44 H 0.97004 * 120.00316 * 359.97438 * 8 7 6 45 45 H 1.07993 * 119.84221 * 359.91515 * 16 15 13 46 46 H 1.08000 * 120.05740 * 179.97438 * 17 16 15 47 47 H 1.08006 * 120.05496 * 180.02562 * 18 17 16 48 48 H 1.08001 * 119.84131 * 179.97438 * 19 18 17 49 49 H 1.08996 * 109.45337 * 241.06193 * 21 20 15 50 50 H 1.08998 * 111.68655 * 118.90242 * 21 20 15 51 51 H 0.96994 * 119.99975 * 265.00388 * 24 4 2 52 52 H 0.97005 * 120.00673 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 3.5699 -0.7207 -1.2497 7 6 4.0798 -1.3303 -2.5571 8 7 5.5448 -1.3304 -2.5572 9 6 6.2187 -1.8232 -3.6153 10 8 5.6122 -2.2662 -4.5675 11 6 7.7256 -1.8227 -3.6156 12 1 8.1954 -0.9760 -3.1151 13 6 8.4319 -3.1765 -3.5255 14 1 7.8313 -4.0787 -3.4102 15 6 9.8605 -3.2253 -3.0406 16 6 10.3893 -3.8046 -1.8955 17 6 11.7437 -3.7327 -1.6402 18 6 12.5786 -3.0812 -2.5290 19 6 12.0545 -2.5044 -3.6680 20 6 10.6927 -2.5754 -3.9261 21 6 9.8919 -2.0018 -5.1053 22 6 8.4318 -2.3966 -4.8462 23 1 7.8384 -2.7208 -5.7011 24 7 1.5516 -2.1024 -1.2494 25 6 0.3100 -2.3896 -1.7505 26 1 -0.3090 -1.5979 -2.1460 27 6 -0.1525 -3.6984 -1.7511 28 7 0.6021 -4.6632 -1.2696 29 14 -1.8459 -4.0903 -2.4353 30 1 -1.9084 -3.6871 -3.8632 31 1 -2.1008 -5.5487 -2.3206 32 1 -2.8751 -3.3463 -1.6655 33 1 -0.3633 0.5140 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.8934 -0.5139 0.8900 37 1 1.6768 1.9562 0.8901 38 1 3.1301 1.4425 0.0005 39 1 1.6768 1.9563 -0.8899 40 1 3.9330 0.3031 -1.1603 41 1 3.9336 -1.3100 -0.4079 42 1 3.7169 -2.3542 -2.6465 43 1 3.7161 -0.7411 -3.3989 44 1 6.0299 -0.9751 -1.7960 45 1 9.7377 -4.3132 -1.2005 46 1 12.1507 -4.1846 -0.7477 47 1 13.6390 -3.0236 -2.3321 48 1 12.7072 -1.9952 -4.3617 49 1 10.2395 -2.4537 -6.0342 50 1 9.9791 -0.9167 -5.1615 51 1 2.1077 -2.8134 -0.8944 52 1 0.2788 -5.5778 -1.2696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485791433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:36 Heat of formation + Delta-G solvation = 12.606080 kcal Electronic energy + Delta-G solvation = -28979.905718 eV Core-core repulsion = 25137.487541 eV Total energy + Delta-G solvation = -3842.418177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13663 -39.30224 -37.57350 -36.90590 -34.64134 -33.03923 -31.99223 -31.23804 -30.71931 -29.47042 -28.05671 -26.45795 -25.66191 -24.24919 -22.94290 -22.33227 -21.30574 -21.00893 -20.61810 -19.91995 -19.16693 -17.54440 -17.08055 -16.47688 -15.90627 -15.47846 -15.37496 -15.24240 -14.76918 -14.45910 -13.97952 -13.94857 -13.78109 -13.58803 -13.51509 -13.30011 -13.02092 -12.87233 -12.78611 -12.64286 -12.01216 -11.94869 -11.68156 -11.61533 -11.57169 -11.19709 -11.12537 -10.89142 -10.84967 -10.76319 -10.57146 -10.43645 -10.29494 -10.25745 -10.05400 -9.97344 -9.65236 -9.43253 -9.05713 -8.87199 -8.79511 -8.73119 -6.91398 -5.72906 -3.00485 0.99587 1.09144 2.52378 3.12504 3.37112 3.46536 3.51821 3.51977 3.69027 4.15251 4.25254 4.55015 4.60037 4.62432 4.75727 4.79633 4.81676 4.97326 5.08199 5.19987 5.23739 5.30903 5.38145 5.46829 5.48029 5.50708 5.57161 5.66594 5.71713 5.72154 5.73340 5.80124 5.92914 5.99381 6.02882 6.14604 6.17665 6.22465 6.24449 6.28281 6.38257 6.40617 6.43700 6.57247 6.67554 6.69106 6.71863 6.74674 6.84253 7.13821 7.34584 7.65440 7.74540 8.36884 8.45318 9.56702 10.13429 10.48230 11.49538 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.002146 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.850211 B =13045.981800 C =13851.315176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.147 4.147 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.122 3.878 8 N -0.722 5.722 9 C 0.540 3.460 10 O -0.534 6.534 11 C -0.148 4.148 12 H 0.121 0.879 13 C -0.099 4.099 14 H 0.125 0.875 15 C -0.064 4.064 16 C -0.098 4.098 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.110 4.110 20 C -0.094 4.094 21 C -0.053 4.053 22 C -0.126 4.126 23 H 0.135 0.865 24 N -0.721 5.721 25 C -0.232 4.232 26 H 0.071 0.929 27 C -0.013 4.013 28 N -0.932 5.932 29 Si 0.901 3.099 30 H -0.286 1.286 31 H -0.292 1.292 32 H -0.287 1.287 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.397 0.603 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.647 8.426 -0.931 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.204 4.204 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.174 4.174 7 C 0.000 4.000 8 N -0.373 5.373 9 C 0.325 3.675 10 O -0.410 6.410 11 C -0.169 4.169 12 H 0.139 0.861 13 C -0.117 4.117 14 H 0.142 0.858 15 C -0.064 4.064 16 C -0.116 4.116 17 C -0.140 4.140 18 C -0.136 4.136 19 C -0.128 4.128 20 C -0.094 4.094 21 C -0.089 4.089 22 C -0.144 4.144 23 H 0.152 0.848 24 N -0.362 5.362 25 C -0.363 4.363 26 H 0.089 0.911 27 C -0.209 4.209 28 N -0.581 5.581 29 Si 0.733 3.267 30 H -0.213 1.213 31 H -0.218 1.218 32 H -0.213 1.213 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.107 0.893 50 H 0.106 0.894 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 23.003 8.066 -1.725 24.437 hybrid contribution -0.582 -0.342 0.362 0.766 sum 22.420 7.724 -1.363 23.753 Atomic orbital electron populations 1.21830 0.95221 1.03895 0.98811 1.21775 0.96745 0.94250 1.00484 1.21936 1.00200 0.97571 1.00738 1.20183 0.89315 0.87796 0.95232 0.93328 1.22128 0.98488 1.00240 0.96557 1.21472 0.76997 1.03393 0.98158 1.46025 1.08385 1.63059 1.19787 1.19379 0.87570 0.77795 0.82757 1.90739 1.69742 1.45964 1.34600 1.22224 0.92316 0.98356 1.03984 0.86110 1.21406 0.93927 0.95249 1.01148 0.85753 1.19633 0.93205 0.98648 0.94959 1.20769 0.95299 0.99311 0.96217 1.21052 0.93283 0.99926 0.99756 1.21049 0.99787 0.98350 0.94462 1.20653 0.93695 1.00643 0.97778 1.21082 0.93533 0.97925 0.96832 1.20845 0.90632 1.01085 0.96369 1.22936 0.96203 1.02772 0.92519 0.84763 1.42432 1.18000 1.01975 1.73760 1.19144 0.92710 0.92315 1.32095 0.91096 1.24706 0.98308 0.95898 1.02013 1.69636 1.36899 0.99814 1.51702 0.86353 0.84470 0.77003 0.78905 1.21313 1.21827 1.21346 0.94127 0.89489 0.95240 0.92215 0.93842 0.93223 0.93284 0.91543 0.91653 0.89715 0.91847 0.76952 0.85846 0.85734 0.85839 0.86125 0.89334 0.89407 0.78321 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.26 37.16 0.31 -2.27 16 2 C -0.11 -1.88 2.69 -90.62 -0.24 -2.12 16 3 C -0.15 -1.98 8.85 37.16 0.33 -1.66 16 4 C 0.19 3.43 2.02 -67.93 -0.14 3.30 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C -0.14 -2.03 4.65 -26.73 -0.12 -2.15 16 7 C 0.12 2.02 5.56 -4.04 -0.02 1.99 16 8 N -0.72 -9.73 5.56 -60.30 -0.33 -10.06 16 9 C 0.54 8.00 7.61 -10.99 -0.08 7.92 16 10 O -0.53 -10.31 16.33 5.56 0.09 -10.22 16 11 C -0.15 -1.65 5.76 -91.77 -0.53 -2.18 16 12 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.10 -1.10 6.58 -91.48 -0.60 -1.70 16 14 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 15 C -0.06 -0.66 5.94 -104.46 -0.62 -1.28 16 16 C -0.10 -0.92 10.04 -39.46 -0.40 -1.32 16 17 C -0.12 -0.99 10.05 -39.66 -0.40 -1.38 16 18 C -0.12 -0.90 10.05 -39.66 -0.40 -1.30 16 19 C -0.11 -0.88 10.04 -39.46 -0.40 -1.28 16 20 C -0.09 -0.87 6.20 -103.09 -0.64 -1.51 16 21 C -0.05 -0.44 6.76 -26.16 -0.18 -0.61 16 22 C -0.13 -1.34 6.49 -90.16 -0.59 -1.92 16 23 H 0.13 1.57 7.79 -51.93 -0.40 1.16 16 24 N -0.72 -16.95 4.45 -53.43 -0.24 -17.19 16 25 C -0.23 -6.13 7.57 -15.06 -0.11 -6.24 16 26 H 0.07 1.84 7.40 -52.49 -0.39 1.45 16 27 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 28 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 29 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 32 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.90 6.01 -51.93 -0.31 1.59 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.59 6.32 -51.93 -0.33 0.27 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.75 7.75 -51.93 -0.40 1.34 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.38 9.75 7.80 -40.82 -0.32 9.43 16 52 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 416.79 15.07 6.28 6.28 Total: -1.00 -31.84 416.79 -12.14 -43.98 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -8.72 Total: 13.10 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -4.93 Total: -16.19 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.15 Total: -54.35 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.84 -12.14 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485791433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.591 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds