Wall clock time and date at job start Wed Apr 1 2020 02:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47451 * 184.99880 * 6 4 2 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 4 9 9 C 1.34777 * 120.00097 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99903 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00178 * 179.97438 * 9 8 7 12 12 H 1.09007 * 115.53838 * 325.58419 * 11 9 8 13 13 C 1.52958 * 117.48140 * 111.17056 * 11 9 8 14 14 H 1.08996 * 118.97270 * 356.70401 * 13 11 9 15 15 C 1.50939 * 118.98423 * 201.35665 * 13 11 9 16 16 C 1.38800 * 129.72517 * 114.99207 * 15 13 11 17 17 C 1.38014 * 120.31551 * 179.97438 * 16 15 13 18 18 C 1.38254 * 119.88455 * 359.97438 * 17 16 15 19 19 C 1.38016 * 119.87907 * 0.03675 * 18 17 16 20 20 C 1.37804 * 110.48172 * 294.97350 * 15 13 11 21 21 C 1.53648 * 110.76016 * 0.65795 * 20 15 13 22 22 C 1.53042 * 117.48149 * 179.97438 * 11 9 8 23 23 H 1.08999 * 119.40978 * 4.09665 * 22 11 9 24 24 N 1.46500 * 109.47473 * 299.99988 * 4 2 1 25 25 C 1.36939 * 119.99792 * 84.99599 * 24 4 2 26 26 H 1.08001 * 119.99680 * 0.02562 * 25 24 4 27 27 C 1.38809 * 119.99850 * 179.97438 * 25 24 4 28 28 N 1.31613 * 120.00225 * 0.02562 * 27 25 24 29 29 Si 1.86799 * 120.00107 * 180.02562 * 27 25 24 30 30 H 1.48504 * 109.47389 * 60.00084 * 29 27 25 31 31 H 1.48497 * 109.47307 * 180.02562 * 29 27 25 32 32 H 1.48503 * 109.47026 * 300.00519 * 29 27 25 33 33 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 34 34 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 36 36 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 37 37 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 38 38 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 39 39 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 40 40 H 1.08998 * 109.47565 * 305.00629 * 6 4 2 41 41 H 1.09000 * 109.46738 * 65.00110 * 6 4 2 42 42 H 1.08996 * 109.47443 * 300.00108 * 7 6 4 43 43 H 1.09000 * 109.46961 * 60.00367 * 7 6 4 44 44 H 0.97004 * 120.00316 * 359.97438 * 8 7 6 45 45 H 1.07993 * 119.84221 * 359.91515 * 16 15 13 46 46 H 1.08000 * 120.05740 * 179.97438 * 17 16 15 47 47 H 1.08006 * 120.05496 * 180.02562 * 18 17 16 48 48 H 1.08001 * 119.84131 * 179.97438 * 19 18 17 49 49 H 1.08996 * 109.45337 * 241.06193 * 21 20 15 50 50 H 1.08998 * 111.68655 * 118.90242 * 21 20 15 51 51 H 0.96994 * 119.99975 * 265.00388 * 24 4 2 52 52 H 0.97005 * 120.00673 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 3.5699 -0.7207 -1.2497 7 6 4.0798 -1.3303 -2.5571 8 7 5.5448 -1.3304 -2.5572 9 6 6.2187 -1.8232 -3.6153 10 8 5.6122 -2.2662 -4.5675 11 6 7.7256 -1.8227 -3.6156 12 1 8.1954 -0.9760 -3.1151 13 6 8.4319 -3.1765 -3.5255 14 1 7.8313 -4.0787 -3.4102 15 6 9.8605 -3.2253 -3.0406 16 6 10.3893 -3.8046 -1.8955 17 6 11.7437 -3.7327 -1.6402 18 6 12.5786 -3.0812 -2.5290 19 6 12.0545 -2.5044 -3.6680 20 6 10.6927 -2.5754 -3.9261 21 6 9.8919 -2.0018 -5.1053 22 6 8.4318 -2.3966 -4.8462 23 1 7.8384 -2.7208 -5.7011 24 7 1.5516 -2.1024 -1.2494 25 6 0.3100 -2.3896 -1.7505 26 1 -0.3090 -1.5979 -2.1460 27 6 -0.1525 -3.6984 -1.7511 28 7 0.6021 -4.6632 -1.2696 29 14 -1.8459 -4.0903 -2.4353 30 1 -1.9084 -3.6871 -3.8632 31 1 -2.1008 -5.5487 -2.3206 32 1 -2.8751 -3.3463 -1.6655 33 1 -0.3633 0.5140 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.8934 -0.5139 0.8900 37 1 1.6768 1.9562 0.8901 38 1 3.1301 1.4425 0.0005 39 1 1.6768 1.9563 -0.8899 40 1 3.9330 0.3031 -1.1603 41 1 3.9336 -1.3100 -0.4079 42 1 3.7169 -2.3542 -2.6465 43 1 3.7161 -0.7411 -3.3989 44 1 6.0299 -0.9751 -1.7960 45 1 9.7377 -4.3132 -1.2005 46 1 12.1507 -4.1846 -0.7477 47 1 13.6390 -3.0236 -2.3321 48 1 12.7072 -1.9952 -4.3617 49 1 10.2395 -2.4537 -6.0342 50 1 9.9791 -0.9167 -5.1615 51 1 2.1077 -2.8134 -0.8944 52 1 0.2788 -5.5778 -1.2696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485791433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:35 Heat of formation + Delta-G solvation = -5.112271 kcal Electronic energy + Delta-G solvation = -28980.674043 eV Core-core repulsion = 25137.487541 eV Total energy + Delta-G solvation = -3843.186502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97640 -40.40373 -38.99490 -37.78236 -36.01142 -34.90746 -32.86507 -32.51227 -31.61945 -31.05974 -28.76277 -27.77542 -27.09848 -25.53953 -24.48072 -23.16093 -22.48762 -22.02950 -21.40155 -20.96556 -20.62117 -19.14109 -18.52408 -17.20095 -17.10709 -16.91817 -16.44648 -16.10472 -16.00303 -15.67582 -15.49783 -15.29504 -15.06886 -14.65799 -14.55965 -14.40999 -14.33797 -13.84781 -13.66347 -13.51652 -13.44831 -13.19049 -12.91349 -12.83978 -12.74197 -12.66470 -12.49899 -12.23172 -12.20114 -12.03424 -11.92970 -11.77157 -11.69756 -11.65373 -11.39619 -11.20748 -11.14681 -10.95964 -10.75252 -10.13791 -9.68353 -9.44773 -8.90878 -7.88718 -5.13322 0.33341 0.47202 1.40460 1.45291 1.47431 1.52508 2.01861 2.55091 2.58581 2.93995 3.31669 3.44258 3.47044 3.69596 3.86385 3.91017 3.92446 3.94248 4.07813 4.16663 4.20344 4.22351 4.28593 4.33836 4.41827 4.52882 4.59091 4.67161 4.68268 4.80243 4.80852 4.83199 4.87385 4.88472 4.97460 5.04368 5.05945 5.10750 5.15382 5.23575 5.24554 5.26136 5.36702 5.44124 5.45834 5.54435 5.57596 5.62430 5.71276 5.72068 5.80625 6.09505 6.33762 6.52553 7.21205 7.40206 8.17624 8.39172 9.34832 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.002146 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.850211 B =13045.981800 C =13851.315176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.138 4.138 4 C 0.178 3.822 5 H 0.039 0.961 6 C -0.119 4.119 7 C 0.134 3.866 8 N -0.707 5.707 9 C 0.535 3.465 10 O -0.587 6.587 11 C -0.140 4.140 12 H 0.149 0.851 13 C -0.103 4.103 14 H 0.102 0.898 15 C -0.084 4.084 16 C -0.114 4.114 17 C -0.127 4.127 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.101 4.101 21 C -0.045 4.045 22 C -0.126 4.126 23 H 0.117 0.883 24 N -0.730 5.730 25 C -0.211 4.211 26 H 0.075 0.925 27 C -0.081 4.081 28 N -0.971 5.971 29 Si 0.957 3.043 30 H -0.284 1.284 31 H -0.301 1.301 32 H -0.277 1.277 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.051 0.949 44 H 0.417 0.583 45 H 0.123 0.877 46 H 0.144 0.856 47 H 0.150 0.850 48 H 0.144 0.856 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.371 0.629 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.337 11.337 -0.225 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.196 4.196 4 C 0.069 3.931 5 H 0.057 0.943 6 C -0.157 4.157 7 C 0.010 3.990 8 N -0.358 5.358 9 C 0.322 3.678 10 O -0.467 6.467 11 C -0.161 4.161 12 H 0.167 0.833 13 C -0.122 4.122 14 H 0.120 0.880 15 C -0.084 4.084 16 C -0.132 4.132 17 C -0.144 4.144 18 C -0.135 4.135 19 C -0.131 4.131 20 C -0.101 4.101 21 C -0.081 4.081 22 C -0.145 4.145 23 H 0.135 0.865 24 N -0.370 5.370 25 C -0.343 4.343 26 H 0.092 0.908 27 C -0.272 4.272 28 N -0.623 5.623 29 Si 0.788 3.212 30 H -0.211 1.211 31 H -0.227 1.227 32 H -0.203 1.203 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.254 0.746 45 H 0.141 0.859 46 H 0.162 0.838 47 H 0.168 0.832 48 H 0.162 0.838 49 H 0.119 0.881 50 H 0.125 0.875 51 H 0.202 0.798 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 25.712 11.057 -0.986 28.006 hybrid contribution -1.373 -1.190 0.155 1.823 sum 24.339 9.867 -0.831 26.276 Atomic orbital electron populations 1.21765 0.96444 1.01425 0.99935 1.21635 0.95676 0.96609 0.98735 1.21852 1.01560 0.94482 1.01717 1.20453 0.91676 0.85139 0.95786 0.94262 1.21997 0.95727 1.02484 0.95529 1.21119 0.78775 1.00335 0.98789 1.45825 1.07184 1.62514 1.20284 1.20056 0.89204 0.76510 0.81989 1.90713 1.71168 1.48191 1.36627 1.22120 0.89463 0.99462 1.05044 0.83309 1.21337 0.94577 0.94256 1.01985 0.87952 1.19628 0.92442 1.00324 0.96055 1.20940 0.96277 0.99760 0.96257 1.21341 0.92701 0.99762 1.00638 1.21428 1.01090 0.97164 0.93852 1.20967 0.93341 1.00433 0.98339 1.21240 0.94174 0.97965 0.96749 1.20854 0.88342 1.02262 0.96641 1.22995 0.97492 1.02314 0.91651 0.86544 1.42614 1.16996 1.03975 1.73391 1.19446 0.93394 0.92037 1.29465 0.90762 1.25389 1.01586 0.96244 1.04017 1.69787 1.38465 0.99614 1.54430 0.85438 0.81294 0.76167 0.78338 1.21081 1.22731 1.20342 0.94022 0.93640 0.93102 0.92842 0.92376 0.91011 0.92858 0.87511 0.91122 0.94620 0.93024 0.74590 0.85895 0.83821 0.83216 0.83810 0.88058 0.87548 0.79755 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.26 71.98 0.59 -4.34 16 2 C -0.11 -3.38 2.69 -10.79 -0.03 -3.41 16 3 C -0.14 -3.20 8.85 71.98 0.64 -2.57 16 4 C 0.18 6.50 2.02 44.99 0.09 6.59 16 5 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 6 C -0.12 -3.39 4.65 30.59 0.14 -3.25 16 7 C 0.13 4.48 5.56 86.38 0.48 4.97 16 8 N -0.71 -18.80 5.56 -463.07 -2.57 -21.37 16 9 C 0.54 16.23 7.61 87.66 0.67 16.89 16 10 O -0.59 -23.95 16.33 -3.03 -0.05 -24.00 16 11 C -0.14 -3.06 5.76 -11.54 -0.07 -3.13 16 12 H 0.15 2.40 8.14 -2.38 -0.02 2.38 16 13 C -0.10 -2.34 6.58 -11.35 -0.07 -2.42 16 14 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 15 C -0.08 -1.68 5.94 -19.76 -0.12 -1.80 16 16 C -0.11 -2.06 10.04 22.35 0.22 -1.84 16 17 C -0.13 -1.78 10.05 22.22 0.22 -1.55 16 18 C -0.12 -1.42 10.05 22.22 0.22 -1.20 16 19 C -0.11 -1.48 10.04 22.35 0.22 -1.26 16 20 C -0.10 -1.69 6.20 -18.87 -0.12 -1.80 16 21 C -0.04 -0.65 6.76 30.97 0.21 -0.45 16 22 C -0.13 -2.67 6.49 -10.50 -0.07 -2.73 16 23 H 0.12 2.88 7.79 -2.39 -0.02 2.86 16 24 N -0.73 -35.32 4.45 -322.94 -1.44 -36.76 16 25 C -0.21 -11.48 7.57 84.03 0.64 -10.84 16 26 H 0.07 3.92 7.40 -2.91 -0.02 3.89 16 27 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 28 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 29 Si 0.96 47.49 29.55 68.60 2.03 49.52 16 30 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 31 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 32 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.99 6.01 -2.39 -0.01 1.98 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.36 6.32 -2.39 -0.02 1.34 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 2.24 6.17 -2.39 -0.01 2.23 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.56 7.75 -2.39 -0.02 1.54 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.42 7.73 8.47 -92.71 -0.79 6.94 16 45 H 0.12 2.09 8.06 -2.91 -0.02 2.06 16 46 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 48 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 49 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 50 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.37 19.66 7.80 -92.71 -0.72 18.94 16 52 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -73.77 416.79 2.01 -71.76 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.59 Total: 39.41 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 4.35 Total: -18.35 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -3.73 Total: -118.34 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -73.77 2.01 -71.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485791433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.646 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds