Wall clock time and date at job start Wed Apr 1 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47024 * 120.00477 * 2 1 3 5 5 H 1.09004 * 109.46881 * 299.99326 * 4 2 1 6 6 C 1.52997 * 109.47504 * 59.99687 * 4 2 1 7 7 C 1.53000 * 109.47060 * 185.00270 * 6 4 2 8 8 N 1.46499 * 109.46840 * 180.02562 * 7 6 4 9 9 C 1.34779 * 119.99872 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00093 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99944 * 179.97438 * 9 8 7 12 12 H 1.08995 * 115.53985 * 325.80282 * 11 9 8 13 13 C 1.53043 * 117.48157 * 180.20879 * 11 9 8 14 14 H 1.09001 * 119.41357 * 140.82239 * 13 11 9 15 15 C 1.53439 * 118.57413 * 343.84955 * 13 11 9 16 16 C 1.50975 * 107.03470 * 297.00876 * 15 13 11 17 17 C 1.38779 * 129.71780 * 179.62304 * 16 15 13 18 18 C 1.38023 * 120.31016 * 180.02562 * 17 16 15 19 19 C 1.38256 * 119.87354 * 359.97438 * 18 17 16 20 20 C 1.38008 * 119.89174 * 0.02562 * 19 18 17 21 21 C 1.37809 * 110.46130 * 359.68585 * 16 15 13 22 22 C 1.50937 * 110.48083 * 359.94273 * 21 16 15 23 23 H 1.09009 * 117.16440 * 220.04701 * 22 21 16 24 24 N 1.46497 * 109.47224 * 180.02562 * 4 2 1 25 25 C 1.36939 * 120.00530 * 84.99153 * 24 4 2 26 26 H 1.07999 * 119.99437 * 0.02562 * 25 24 4 27 27 C 1.38808 * 120.00276 * 179.97438 * 25 24 4 28 28 N 1.31624 * 120.00057 * 0.02562 * 27 25 24 29 29 Si 1.86800 * 120.00117 * 180.02562 * 27 25 24 30 30 H 1.48504 * 109.46817 * 60.00345 * 29 27 25 31 31 H 1.48498 * 109.47322 * 180.02562 * 29 27 25 32 32 H 1.48504 * 109.47235 * 300.00470 * 29 27 25 33 33 H 1.09004 * 109.46741 * 300.00111 * 1 2 3 34 34 H 1.09001 * 109.46917 * 59.99433 * 1 2 3 35 35 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 36 36 H 1.09004 * 109.46741 * 239.99889 * 2 1 3 37 37 H 1.09002 * 109.47196 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.47630 * 300.00130 * 3 2 1 39 39 H 1.09004 * 109.47346 * 60.00260 * 3 2 1 40 40 H 1.09002 * 109.47153 * 64.99951 * 6 4 2 41 41 H 1.09001 * 109.46832 * 305.00142 * 6 4 2 42 42 H 1.09001 * 109.47194 * 299.99650 * 7 6 4 43 43 H 1.08992 * 109.47399 * 59.99823 * 7 6 4 44 44 H 0.97005 * 120.00448 * 359.97438 * 8 7 6 45 45 H 1.09001 * 109.92377 * 177.66313 * 15 13 11 46 46 H 1.09000 * 109.92103 * 56.35402 * 15 13 11 47 47 H 1.07993 * 119.85049 * 0.05067 * 17 16 15 48 48 H 1.07994 * 120.06520 * 179.97438 * 18 17 16 49 49 H 1.08002 * 120.05396 * 179.97438 * 19 18 17 50 50 H 1.07990 * 119.84622 * 180.02562 * 20 19 18 51 51 H 0.97001 * 119.99762 * 264.99736 * 24 4 2 52 52 H 0.97002 * 119.99591 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 1.9347 -2.8478 2.5565 8 7 1.4469 -4.2292 2.5562 9 6 1.6878 -5.0292 3.6138 10 8 2.3088 -4.6057 4.5655 11 6 1.1855 -6.4500 3.6138 12 1 0.2322 -6.6114 3.1106 13 6 1.4874 -7.3059 4.8460 14 1 0.7276 -7.9919 5.2206 15 6 2.5720 -6.8307 5.8218 16 6 3.8758 -6.8156 5.0606 17 6 5.1472 -6.4575 5.4865 18 6 6.2161 -6.5172 4.6154 19 6 6.0201 -6.9359 3.3124 20 6 4.7564 -7.2923 2.8873 21 6 3.6801 -7.2317 3.7615 22 6 2.2271 -7.5669 3.5276 23 1 2.0107 -8.4450 2.9189 24 7 3.5050 -0.7208 1.2495 25 6 4.1893 0.3541 1.7509 26 1 3.6489 1.2014 2.1465 27 6 5.5774 0.3543 1.7517 28 7 6.2359 -0.6785 1.2701 29 14 6.5108 1.8204 2.4364 30 1 6.1512 2.0131 3.8643 31 1 7.9709 1.5750 2.3219 32 1 6.1522 3.0388 1.6668 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 -0.3633 -1.0276 0.0005 36 1 1.8933 -0.5139 -0.8900 37 1 3.1301 1.4425 -0.0005 38 1 1.6768 1.9564 -0.8899 39 1 1.6768 1.9563 0.8900 40 1 1.9646 -2.7029 0.4073 41 1 0.4437 -2.1650 1.1596 42 1 3.0210 -2.8466 2.6461 43 1 1.5002 -2.3088 3.3983 44 1 0.9504 -4.5682 1.7949 45 1 2.6416 -7.5193 6.6639 46 1 2.3379 -5.8273 6.1774 47 1 5.3011 -6.1311 6.5043 48 1 7.2037 -6.2372 4.9508 49 1 6.8544 -6.9833 2.6282 50 1 4.6042 -7.6197 1.8695 51 1 3.9903 -1.4820 0.8945 52 1 7.2059 -0.6782 1.2703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485791435.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:38 Heat of formation + Delta-G solvation = 2.259784 kcal Electronic energy + Delta-G solvation = -30310.509081 eV Core-core repulsion = 26467.642255 eV Total energy + Delta-G solvation = -3842.866826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21322 -40.03080 -38.95191 -37.67698 -35.87001 -34.90768 -32.94024 -32.49888 -31.58683 -31.05710 -28.65467 -27.77219 -27.09195 -25.46839 -24.45077 -23.41699 -22.47341 -22.15317 -21.27736 -20.87457 -20.50071 -19.11084 -18.14044 -17.00355 -16.99865 -16.86981 -16.62384 -16.15085 -15.91239 -15.69482 -15.52988 -15.29136 -15.00111 -14.88039 -14.48135 -14.35167 -14.23285 -13.94218 -13.56640 -13.51544 -13.26981 -13.11199 -12.91167 -12.84913 -12.70746 -12.66677 -12.49206 -12.20181 -12.19215 -12.03576 -11.91719 -11.76504 -11.68574 -11.52631 -11.37719 -11.22109 -11.17796 -10.80577 -10.42162 -10.03110 -9.65050 -9.35855 -8.90793 -7.88875 -5.13487 0.37274 0.49315 1.43994 1.46253 1.51315 1.60101 2.23351 2.57896 2.60573 2.94340 3.41363 3.44083 3.57396 3.83737 3.91893 3.94886 3.98146 4.04271 4.13555 4.16391 4.19343 4.24540 4.29672 4.41763 4.53303 4.55248 4.59885 4.68500 4.69934 4.80261 4.81666 4.83402 4.90258 4.96721 4.98913 5.04178 5.09354 5.15712 5.20605 5.23964 5.27545 5.36313 5.39188 5.45054 5.51468 5.56654 5.58967 5.59406 5.70735 5.71745 5.80181 6.11497 6.33344 6.68407 7.39682 7.41245 8.17351 8.38851 9.34611 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.003454 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.626801 B = 8104.713666 C =10095.930334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.138 4.138 4 C 0.179 3.821 5 H 0.037 0.963 6 C -0.118 4.118 7 C 0.140 3.860 8 N -0.714 5.714 9 C 0.522 3.478 10 O -0.573 6.573 11 C -0.153 4.153 12 H 0.178 0.822 13 C -0.113 4.113 14 H 0.169 0.831 15 C -0.064 4.064 16 C -0.079 4.079 17 C -0.135 4.135 18 C -0.129 4.129 19 C -0.143 4.143 20 C -0.110 4.110 21 C -0.102 4.102 22 C -0.094 4.094 23 H 0.159 0.841 24 N -0.730 5.730 25 C -0.213 4.213 26 H 0.073 0.927 27 C -0.078 4.078 28 N -0.970 5.970 29 Si 0.955 3.045 30 H -0.285 1.285 31 H -0.300 1.300 32 H -0.276 1.276 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.027 0.973 43 H 0.046 0.954 44 H 0.415 0.585 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.121 0.879 48 H 0.132 0.868 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.370 0.630 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.523 -16.990 1.667 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.070 3.930 5 H 0.055 0.945 6 C -0.156 4.156 7 C 0.015 3.985 8 N -0.366 5.366 9 C 0.310 3.690 10 O -0.452 6.452 11 C -0.174 4.174 12 H 0.195 0.805 13 C -0.131 4.131 14 H 0.187 0.813 15 C -0.101 4.101 16 C -0.079 4.079 17 C -0.153 4.153 18 C -0.146 4.146 19 C -0.161 4.161 20 C -0.127 4.127 21 C -0.102 4.102 22 C -0.112 4.112 23 H 0.176 0.824 24 N -0.369 5.369 25 C -0.345 4.345 26 H 0.091 0.909 27 C -0.270 4.270 28 N -0.622 5.622 29 Si 0.786 3.214 30 H -0.212 1.212 31 H -0.226 1.226 32 H -0.202 1.202 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.252 0.748 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.139 0.861 48 H 0.150 0.850 49 H 0.153 0.847 50 H 0.154 0.846 51 H 0.202 0.798 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.045 -16.500 2.440 22.463 hybrid contribution 1.645 0.999 -0.049 1.925 sum -13.400 -15.501 2.391 20.629 Atomic orbital electron populations 1.21851 0.93565 1.02456 1.01704 1.21631 0.96141 0.96136 0.98703 1.21766 1.01492 0.96398 0.99919 1.20445 0.83156 0.93719 0.95670 0.94535 1.21982 1.02592 0.95451 0.95590 1.20966 0.97650 0.81489 0.98368 1.45891 1.57589 1.12363 1.20732 1.20513 0.78763 0.87713 0.81987 1.90680 1.41725 1.76632 1.36180 1.22567 1.02045 0.87279 1.05498 0.80518 1.23122 1.00259 1.01204 0.88480 0.81324 1.20463 0.89115 1.02671 0.97822 1.20710 0.94833 0.96344 0.95985 1.20866 0.92458 1.01423 1.00553 1.21289 0.99398 0.99630 0.94328 1.21281 0.97892 1.00592 0.96362 1.20942 0.91971 1.00024 0.99809 1.20023 0.94788 1.01203 0.94172 1.21581 0.86724 0.99475 1.03402 0.82368 1.42603 1.01186 1.19755 1.73380 1.19439 0.88985 0.96493 1.29612 0.90879 1.25366 0.97602 1.00078 1.03919 1.69799 1.06197 1.31805 1.54352 0.85464 0.77455 0.80175 0.78311 1.21193 1.22632 1.20244 0.92927 0.92314 0.90954 0.92855 0.93681 0.93039 0.94090 0.91335 0.87504 0.95495 0.93594 0.74850 0.88731 0.90069 0.86088 0.84969 0.84651 0.84588 0.79837 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.85 71.98 0.64 -2.58 16 2 C -0.10 -3.40 2.69 -10.79 -0.03 -3.43 16 3 C -0.14 -4.99 8.26 71.98 0.59 -4.40 16 4 C 0.18 6.64 2.02 44.99 0.09 6.73 16 5 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 6 C -0.12 -3.43 4.65 30.59 0.14 -3.28 16 7 C 0.14 4.78 5.56 86.38 0.48 5.26 16 8 N -0.71 -18.72 5.56 -463.07 -2.57 -21.30 16 9 C 0.52 15.14 6.92 87.66 0.61 15.75 16 10 O -0.57 -22.38 12.53 -3.01 -0.04 -22.42 16 11 C -0.15 -2.75 6.18 -11.54 -0.07 -2.82 16 12 H 0.18 1.55 8.14 -2.39 -0.02 1.53 16 13 C -0.11 -1.93 7.06 -10.49 -0.07 -2.01 16 14 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 15 C -0.06 -1.58 5.77 30.08 0.17 -1.40 16 16 C -0.08 -2.36 4.86 -19.75 -0.10 -2.45 16 17 C -0.13 -4.27 10.04 22.35 0.22 -4.04 16 18 C -0.13 -3.96 10.05 22.22 0.22 -3.73 16 19 C -0.14 -4.23 10.04 22.22 0.22 -4.01 16 20 C -0.11 -3.06 10.04 22.35 0.22 -2.84 16 21 C -0.10 -2.78 5.27 -19.76 -0.10 -2.89 16 22 C -0.09 -1.73 6.85 -11.34 -0.08 -1.81 16 23 H 0.16 1.83 8.14 -2.38 -0.02 1.81 16 24 N -0.73 -35.88 4.45 -322.95 -1.44 -37.32 16 25 C -0.21 -11.73 7.57 84.03 0.64 -11.10 16 26 H 0.07 3.91 7.40 -2.91 -0.02 3.89 16 27 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 28 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 29 Si 0.96 47.83 29.55 68.60 2.03 49.86 16 30 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 31 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 32 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.37 6.32 -2.39 -0.02 1.36 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 2.00 6.01 -2.39 -0.01 1.98 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.11 2.28 6.17 -2.39 -0.01 2.26 16 42 H 0.03 1.22 7.75 -2.39 -0.02 1.20 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.41 7.36 8.47 -92.70 -0.79 6.57 16 45 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 2.49 6.21 -2.39 -0.01 2.47 16 47 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 48 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 49 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 50 H 0.14 3.10 8.06 -2.92 -0.02 3.08 16 51 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 52 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -77.36 408.99 1.95 -75.41 By element: Atomic # 1 Polarization: 46.13 SS G_CDS: -0.58 Total: 45.55 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.27 Total: -29.16 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -3.73 Total: -119.24 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.04 Total: -22.42 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -77.36 1.95 -75.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485791435.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.670 kcal (2) G-P(sol) polarization free energy of solvation -77.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds