Wall clock time and date at job start Wed Apr 1 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46650 * 2 1 4 4 C 1.52990 * 109.47175 * 119.99838 * 2 1 3 5 5 C 1.52996 * 109.47167 * 175.00086 * 4 2 1 6 6 N 1.46903 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.46902 * 110.99820 * 293.95520 * 6 5 4 8 8 C 1.46900 * 111.00405 * 170.00260 * 6 5 4 9 9 C 1.52998 * 109.47420 * 199.76998 * 8 6 5 10 10 H 1.09001 * 109.51819 * 305.35119 * 9 8 6 11 11 C 1.53039 * 109.49930 * 65.42981 * 9 8 6 12 12 C 1.53038 * 109.53730 * 181.31852 * 11 9 8 13 13 C 1.53190 * 109.31128 * 298.63642 * 12 11 9 14 14 N 1.46926 * 108.77819 * 54.63908 * 13 12 11 15 15 C 1.34768 * 120.63373 * 126.36741 * 14 13 12 16 16 O 1.21283 * 119.99918 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00315 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47372 * 180.02562 * 17 15 14 19 19 C 1.76205 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99617 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99933 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99688 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00107 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47271 * 90.00009 * 23 21 19 25 25 H 1.48496 * 109.46807 * 210.00167 * 23 21 19 26 26 H 1.48499 * 109.47034 * 329.99774 * 23 21 19 27 27 C 1.46925 * 118.73277 * 306.63843 * 14 13 12 28 28 H 1.09005 * 109.47104 * 299.99904 * 1 2 3 29 29 H 1.08995 * 109.47119 * 60.00148 * 1 2 3 30 30 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46931 * 240.00104 * 2 1 3 32 32 H 1.09001 * 109.46437 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46845 * 299.99932 * 3 2 1 34 34 H 1.08992 * 109.47148 * 59.99900 * 3 2 1 35 35 H 1.09002 * 109.46981 * 54.99868 * 4 2 1 36 36 H 1.09002 * 109.47417 * 294.99977 * 4 2 1 37 37 H 1.09003 * 109.46953 * 60.00371 * 5 4 2 38 38 H 1.08998 * 109.47346 * 300.00204 * 5 4 2 39 39 H 1.08999 * 109.46912 * 301.84483 * 7 6 5 40 40 H 1.08997 * 109.47211 * 61.84487 * 7 6 5 41 41 H 1.08999 * 109.47161 * 181.84923 * 7 6 5 42 42 H 1.08998 * 109.47330 * 79.76396 * 8 6 5 43 43 H 1.09009 * 109.46719 * 319.77025 * 8 6 5 44 44 H 1.08999 * 109.45675 * 61.29988 * 11 9 8 45 45 H 1.08999 * 109.46109 * 301.34268 * 11 9 8 46 46 H 1.08999 * 109.49765 * 178.68506 * 12 11 9 47 47 H 1.09000 * 109.49749 * 58.58528 * 12 11 9 48 48 H 1.09003 * 109.59040 * 294.84355 * 13 12 11 49 49 H 1.09010 * 109.58417 * 174.42228 * 13 12 11 50 50 H 1.09005 * 109.46802 * 60.00034 * 17 15 14 51 51 H 1.08996 * 109.47031 * 300.00267 * 17 15 14 52 52 H 0.96996 * 119.99871 * 179.97438 * 22 21 19 53 53 H 1.09001 * 109.58634 * 173.14613 * 27 14 13 54 54 H 1.09001 * 109.59131 * 293.56737 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1879 6 7 4.0545 -1.5239 2.3871 7 6 3.8099 -0.7235 3.5944 8 6 5.4789 -1.8586 2.2570 9 6 5.8338 -2.9712 3.2456 10 1 5.5437 -2.6701 4.2522 11 6 5.0901 -4.2523 2.8613 12 6 5.4188 -5.3566 3.8686 13 6 6.9235 -5.6421 3.8342 14 7 7.6488 -4.3844 4.0597 15 6 8.5765 -4.2916 5.0328 16 8 9.1688 -3.2479 5.2085 17 6 8.8781 -5.4847 5.9027 18 16 10.1575 -5.0464 7.1056 19 6 10.3089 -6.5782 7.9631 20 1 9.6978 -7.4209 7.6752 21 6 11.2127 -6.7016 9.0093 22 7 11.3262 -7.8461 9.6495 23 14 12.2682 -5.2434 9.5086 24 1 11.5584 -4.4500 10.5438 25 1 13.5587 -5.7315 10.0574 26 1 12.5265 -4.3897 8.3213 27 6 7.3392 -3.2280 3.2078 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6054 -1.7197 1.2951 36 1 1.7517 -0.1582 2.1369 37 1 3.9994 0.1677 1.1420 38 1 3.8532 -1.3938 0.3002 39 1 4.2996 0.2450 3.4935 40 1 2.7374 -0.5769 3.7220 41 1 4.2114 -1.2448 4.4634 42 1 6.0808 -0.9757 2.4722 43 1 5.6812 -2.1973 1.2408 44 1 5.3992 -4.5664 1.8644 45 1 4.0165 -4.0643 2.8661 46 1 4.8707 -6.2619 3.6078 47 1 5.1327 -5.0330 4.8694 48 1 7.1957 -6.0517 2.8614 49 1 7.1779 -6.3561 4.6177 50 1 9.2301 -6.3079 5.2810 51 1 7.9734 -5.7882 6.4294 52 1 11.9580 -7.9324 10.3803 53 1 7.8678 -2.3496 3.5779 54 1 7.6459 -3.4366 2.1828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490754440.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:36 Heat of formation + Delta-G solvation = -77.576818 kcal Electronic energy + Delta-G solvation = -27860.988546 eV Core-core repulsion = 24150.103697 eV Total energy + Delta-G solvation = -3710.884849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28460 -39.53208 -38.25922 -36.65531 -34.68296 -34.18388 -32.66804 -31.05676 -29.84873 -28.04398 -27.95908 -27.81506 -26.25339 -25.44103 -23.18305 -22.33662 -21.16501 -20.71715 -20.37307 -19.47353 -18.21093 -17.27465 -17.07528 -16.70516 -16.66855 -16.37846 -16.00056 -15.69590 -15.50700 -15.20883 -15.10998 -14.92092 -14.59265 -14.44942 -14.37329 -14.11859 -13.80867 -13.62830 -13.50858 -13.36031 -13.21318 -13.06313 -13.02915 -12.80323 -12.66879 -12.59714 -12.43098 -12.03788 -11.94288 -11.87669 -11.75708 -11.73553 -11.53251 -11.35936 -11.35218 -11.26577 -11.18036 -10.89096 -10.52812 -9.67681 -9.24698 -9.01529 -8.52258 -6.23492 0.96331 1.30339 1.45059 1.50191 1.53600 2.05784 2.24358 2.67386 2.85940 2.93423 3.51731 3.73853 3.91056 3.95606 4.00725 4.04019 4.10250 4.14362 4.17337 4.24602 4.31919 4.37919 4.40508 4.44482 4.46779 4.59701 4.60338 4.69747 4.72778 4.78521 4.80512 4.83926 4.84790 4.87929 4.96018 4.98838 5.02537 5.06605 5.12448 5.17516 5.18516 5.21513 5.37120 5.43697 5.49967 5.51552 5.54414 5.55918 5.70115 6.09632 6.10403 6.17012 6.26193 6.92902 7.07446 8.60091 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.027778 B = 0.001804 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.766200 B =15521.458864 C =15939.798279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.104 4.104 5 C 0.056 3.944 6 N -0.541 5.541 7 C 0.023 3.977 8 C 0.066 3.934 9 C -0.086 4.086 10 H 0.055 0.945 11 C -0.095 4.095 12 C -0.132 4.132 13 C 0.097 3.903 14 N -0.603 5.603 15 C 0.533 3.467 16 O -0.566 6.566 17 C -0.105 4.105 18 S -0.178 6.178 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.257 1.257 26 H -0.238 1.238 27 C 0.117 3.883 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.022 0.978 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.051 0.949 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.112 0.888 51 H 0.109 0.891 52 H 0.277 0.723 53 H 0.066 0.934 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.583 13.455 -23.345 35.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.142 4.142 5 C -0.072 4.072 6 N -0.265 5.265 7 C -0.126 4.126 8 C -0.062 4.062 9 C -0.106 4.106 10 H 0.073 0.927 11 C -0.132 4.132 12 C -0.170 4.170 13 C -0.024 4.024 14 N -0.337 5.337 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.256 4.256 18 S 0.049 5.951 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.162 1.162 27 C -0.006 4.006 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.130 0.870 51 H 0.127 0.873 52 H 0.087 0.913 53 H 0.084 0.916 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.901 14.425 -22.918 34.828 hybrid contribution 0.454 -0.295 0.677 0.867 sum -21.447 14.130 -22.241 33.974 Atomic orbital electron populations 1.21822 0.94872 1.01875 1.01789 1.21081 0.95991 0.96158 0.98112 1.21897 1.00937 0.96073 1.01716 1.21580 0.94148 1.00761 0.97733 1.22250 0.95904 0.96652 0.92365 1.61918 1.16670 1.44704 1.03166 1.22436 1.02122 0.95154 0.92849 1.22017 0.87863 0.96411 0.99921 1.21305 0.93136 0.96786 0.99366 0.92692 1.21389 1.00996 0.92288 0.98571 1.21929 0.94225 1.00729 1.00083 1.22088 0.92535 0.84335 1.03491 1.48055 1.38272 1.14330 1.33002 1.20022 0.79265 0.88382 0.80313 1.90663 1.51705 1.31665 1.70474 1.23270 1.02611 1.00113 0.99587 1.84714 1.50410 1.19669 1.40293 1.22442 1.27413 0.97223 1.20550 0.91914 1.25532 0.97050 0.98498 0.94707 1.70010 1.36847 1.25943 1.22512 0.85883 0.79523 0.80130 0.80937 1.18741 1.18168 1.16221 1.21566 0.96089 0.88374 0.94560 0.92971 0.92365 0.92540 0.90948 0.92796 0.92436 0.93097 0.91536 0.92397 0.94876 0.90293 0.95955 0.90503 0.92315 0.95156 0.89271 0.90804 0.90266 0.88430 0.92990 0.88911 0.89800 0.87022 0.87308 0.91341 0.91558 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 71.98 0.66 -0.57 16 2 C -0.09 -0.84 2.92 -10.79 -0.03 -0.87 16 3 C -0.15 -1.34 8.95 71.99 0.64 -0.70 16 4 C -0.10 -1.09 4.60 30.59 0.14 -0.95 16 5 C 0.06 0.64 4.70 86.30 0.41 1.04 16 6 N -0.54 -7.64 4.14 -922.45 -3.82 -11.47 16 7 C 0.02 0.34 9.12 127.69 1.16 1.51 16 8 C 0.07 0.98 4.39 86.30 0.38 1.36 16 9 C -0.09 -1.52 2.38 -10.86 -0.03 -1.55 16 10 H 0.05 1.22 6.70 -2.39 -0.02 1.21 16 11 C -0.09 -1.37 5.07 30.62 0.16 -1.21 16 12 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 13 C 0.10 1.87 6.34 86.36 0.55 2.42 16 14 N -0.60 -15.96 2.98 -819.73 -2.44 -18.40 16 15 C 0.53 19.56 7.72 87.66 0.68 20.24 16 16 O -0.57 -25.31 15.28 -3.04 -0.05 -25.36 16 17 C -0.11 -4.14 4.50 71.24 0.32 -3.82 16 18 S -0.18 -9.18 18.55 -56.49 -1.05 -10.23 16 19 C -0.53 -31.12 10.04 67.95 0.68 -30.44 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.82 5.50 84.86 0.47 3.29 16 22 N -0.92 -55.91 13.97 21.65 0.30 -55.60 16 23 Si 0.91 45.44 27.74 68.60 1.90 47.35 16 24 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 27 C 0.12 2.59 5.69 86.22 0.49 3.08 16 28 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.51 6.57 -2.39 -0.02 0.49 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.66 6.59 -2.39 -0.02 0.65 16 37 H 0.03 0.40 6.53 -2.39 -0.02 0.39 16 38 H 0.08 0.82 7.83 -2.39 -0.02 0.80 16 39 H 0.02 0.34 8.13 -2.39 -0.02 0.32 16 40 H 0.08 1.02 6.56 -2.39 -0.02 1.01 16 41 H 0.06 1.02 6.65 -2.39 -0.02 1.00 16 42 H 0.03 0.50 8.00 -2.39 -0.02 0.48 16 43 H 0.09 1.07 7.73 -2.38 -0.02 1.05 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.18 7.73 -2.39 -0.02 1.16 16 46 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.08 1.73 5.93 -2.38 -0.01 1.71 16 50 H 0.11 4.05 7.94 -2.39 -0.02 4.03 16 51 H 0.11 3.99 7.69 -2.40 -0.02 3.98 16 52 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 53 H 0.07 1.83 7.01 -2.39 -0.02 1.81 16 54 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -71.54 422.43 2.51 -69.03 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.80 Total: 13.75 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 6.86 Total: -9.06 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -5.96 Total: -85.47 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.35 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -1.05 Total: -10.23 kcal Total: -71.54 2.51 -69.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490754440.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.547 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds