Wall clock time and date at job start Wed Apr 1 2020 01:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47456 * 2 1 4 4 C 1.53002 * 109.47020 * 120.00293 * 2 1 3 5 5 C 1.52994 * 109.46948 * 65.00021 * 4 2 1 6 6 C 1.53001 * 109.47254 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.47411 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00050 * 293.95482 * 7 6 5 9 9 C 1.46901 * 110.99800 * 170.00118 * 7 6 5 10 10 C 1.52996 * 109.46930 * 190.00067 * 9 7 6 11 11 H 1.09003 * 110.91839 * 302.55071 * 10 9 7 12 12 C 1.55157 * 111.00528 * 178.64904 * 10 9 7 13 13 C 1.54320 * 102.86673 * 206.22821 * 12 10 9 14 14 N 1.47021 * 107.27206 * 22.52802 * 13 12 10 15 15 C 1.34781 * 125.64992 * 180.96769 * 14 13 12 16 16 O 1.21274 * 120.00344 * 179.69253 * 15 14 13 17 17 C 1.50701 * 119.99423 * 359.69048 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47422 * 108.70588 * 0.70247 * 14 13 12 28 28 H 1.09000 * 109.47005 * 299.99824 * 1 2 3 29 29 H 1.09002 * 109.47039 * 59.99503 * 1 2 3 30 30 H 1.08997 * 109.47246 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47005 * 240.00176 * 2 1 3 32 32 H 1.08997 * 109.47309 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47275 * 300.00359 * 3 2 1 34 34 H 1.09000 * 109.46870 * 60.00093 * 3 2 1 35 35 H 1.08992 * 109.47240 * 304.99938 * 4 2 1 36 36 H 1.09000 * 109.46601 * 184.99783 * 4 2 1 37 37 H 1.09001 * 109.47468 * 59.99888 * 5 4 2 38 38 H 1.09000 * 109.47275 * 299.99348 * 5 4 2 39 39 H 1.09001 * 109.46791 * 59.99698 * 6 5 4 40 40 H 1.09001 * 109.47153 * 299.99906 * 6 5 4 41 41 H 1.08995 * 109.47325 * 296.04457 * 8 7 6 42 42 H 1.08996 * 109.47052 * 56.04511 * 8 7 6 43 43 H 1.08999 * 109.47426 * 176.04446 * 8 7 6 44 44 H 1.09001 * 109.46945 * 70.00270 * 9 7 6 45 45 H 1.09000 * 109.47540 * 309.99848 * 9 7 6 46 46 H 1.08996 * 110.72374 * 324.79112 * 12 10 9 47 47 H 1.09005 * 110.71915 * 88.06400 * 12 10 9 48 48 H 1.08996 * 109.98932 * 263.05248 * 13 12 10 49 49 H 1.09002 * 109.77309 * 141.88293 * 13 12 10 50 50 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 51 51 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 52 52 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 53 53 H 1.09006 * 110.36753 * 94.93529 * 27 14 13 54 54 H 1.09000 * 110.36960 * 217.14879 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1878 6 6 2.1457 -2.9170 2.4367 7 7 1.7565 -4.3323 2.3781 8 6 0.2974 -4.4809 2.4605 9 6 2.4250 -5.1062 3.4328 10 6 2.1970 -6.5997 3.1916 11 1 1.1322 -6.8305 3.1584 12 6 2.9177 -7.4533 4.2684 13 6 3.1655 -8.7900 3.5381 14 7 3.1407 -8.5101 2.0950 15 6 3.2991 -9.4219 1.1151 16 8 3.2544 -9.0774 -0.0468 17 6 3.5318 -10.8695 1.4635 18 16 3.7052 -11.8356 -0.0572 19 6 3.9592 -13.4396 0.6267 20 1 3.9703 -13.5742 1.6981 21 6 4.1451 -14.5300 -0.2118 22 7 4.1321 -14.3658 -1.5178 23 14 4.4151 -16.2303 0.5131 24 1 4.5857 -17.2152 -0.5851 25 1 5.6334 -16.2186 1.3621 26 1 3.2401 -16.6087 1.3386 27 6 2.9074 -7.0680 1.8970 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2619 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 2.0698 -2.6550 0.3001 38 1 0.5489 -2.2724 1.1420 39 1 1.7114 -2.4576 3.3247 40 1 3.2320 -2.8401 2.4822 41 1 -0.0500 -4.1235 3.4298 42 1 -0.1725 -3.8979 1.6686 43 1 0.0321 -5.5317 2.3444 44 1 2.0141 -4.8280 4.4033 45 1 3.4941 -4.8946 3.4166 46 1 3.8595 -6.9894 4.5616 47 1 2.2744 -7.6037 5.1354 48 1 2.3814 -9.5036 3.7908 49 1 4.1391 -9.1899 3.8214 50 1 2.6856 -11.2454 2.0387 51 1 4.4423 -10.9588 2.0561 52 1 4.2624 -15.1278 -2.1037 53 1 3.8551 -6.5438 1.7735 54 1 2.2675 -6.9026 1.0302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494114593.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:09 Heat of formation + Delta-G solvation = -77.709146 kcal Electronic energy + Delta-G solvation = -27233.477017 eV Core-core repulsion = 23522.586429 eV Total energy + Delta-G solvation = -3710.890588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09405 -39.43082 -38.29794 -37.14556 -34.59057 -33.77736 -32.13733 -30.83527 -29.96953 -28.13147 -27.91114 -27.69199 -26.80910 -24.75285 -23.32185 -21.66075 -21.09055 -20.78789 -20.64529 -19.55407 -18.03923 -17.58801 -16.88529 -16.84974 -16.71226 -16.31710 -15.93763 -15.82236 -15.54669 -15.38648 -14.88811 -14.70372 -14.48079 -14.35506 -14.20507 -14.00738 -13.79091 -13.43289 -13.29838 -13.16265 -13.08382 -13.06731 -12.86345 -12.68361 -12.63177 -12.58015 -12.50974 -12.26611 -12.06643 -11.98763 -11.77078 -11.72766 -11.51557 -11.45350 -11.23646 -11.16733 -11.13001 -10.96476 -10.29572 -9.67323 -9.19813 -8.69204 -8.34536 -6.14038 1.24074 1.44355 1.45131 1.55549 1.56442 2.12513 2.27441 2.90329 2.99302 3.25453 3.57987 3.64654 3.80322 3.90578 3.95237 3.99118 4.08488 4.19421 4.22996 4.31441 4.33487 4.38331 4.43480 4.48717 4.49202 4.61831 4.65422 4.69616 4.73170 4.76586 4.78527 4.81027 4.85627 4.92115 4.94166 4.97171 5.01166 5.04538 5.08338 5.12363 5.14190 5.27564 5.31487 5.34374 5.38341 5.40685 5.43994 5.53199 5.57043 6.16168 6.19187 6.19585 6.42176 7.05930 7.12327 8.74620 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.001669 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.697676 B =16769.700902 C =17700.054053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.114 4.114 6 C 0.060 3.940 7 N -0.561 5.561 8 C 0.022 3.978 9 C 0.073 3.927 10 C -0.086 4.086 11 H 0.084 0.916 12 C -0.111 4.111 13 C 0.089 3.911 14 N -0.620 5.620 15 C 0.543 3.457 16 O -0.570 6.570 17 C -0.118 4.118 18 S -0.153 6.153 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.001 2.999 24 H -0.278 1.278 25 H -0.261 1.261 26 H -0.261 1.261 27 C 0.123 3.877 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.272 0.728 53 H 0.063 0.937 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 29.125 17.136 34.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.152 4.152 6 C -0.068 4.068 7 N -0.285 5.285 8 C -0.126 4.126 9 C -0.055 4.055 10 C -0.106 4.106 11 H 0.102 0.898 12 C -0.149 4.149 13 C -0.033 4.033 14 N -0.355 5.355 15 C 0.331 3.669 16 O -0.449 6.449 17 C -0.269 4.269 18 S 0.074 5.926 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.203 1.203 25 H -0.186 1.186 26 H -0.186 1.186 27 C 0.001 3.999 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.127 0.873 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.124 0.876 51 H 0.124 0.876 52 H 0.080 0.920 53 H 0.082 0.918 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.158 29.331 14.764 33.410 hybrid contribution -0.056 -1.224 1.584 2.003 sum -6.214 28.107 16.348 33.104 Atomic orbital electron populations 1.21878 0.95159 1.01674 1.01790 1.21126 0.96075 0.96431 0.98224 1.21829 1.00988 0.95624 1.01921 1.21552 1.00874 0.94225 0.97843 1.21614 1.01113 0.94827 0.97663 1.22113 1.00696 0.86620 0.97328 1.61931 1.08035 1.10422 1.48146 1.22435 0.87462 1.02125 1.00570 1.22027 0.99857 0.90742 0.92848 1.22335 0.99982 0.95075 0.93174 0.89785 1.22683 1.02426 0.92324 0.97489 1.22370 1.02859 0.99936 0.78154 1.48554 1.71239 1.08472 1.07242 1.19811 0.75822 0.86885 0.84407 1.90680 1.52047 1.81369 1.20844 1.23295 1.05950 0.94108 1.03566 1.85609 1.94530 1.03798 1.08623 1.23163 1.57457 0.93155 0.95781 0.89885 1.26160 0.93869 1.04103 0.94968 1.70188 1.47382 1.33098 1.04098 0.84977 0.79443 0.75502 0.77895 1.20318 1.18569 1.18582 1.22168 0.99711 0.78802 0.99197 0.92370 0.92860 0.92843 0.92159 0.92665 0.92700 0.92339 0.91525 0.91908 0.92867 0.91720 0.94180 0.90767 0.94684 0.91330 0.91950 0.92468 0.89934 0.88749 0.87279 0.90563 0.90389 0.87634 0.87606 0.91955 0.91839 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.95 71.98 0.64 -0.98 16 2 C -0.10 -1.15 2.92 -10.79 -0.03 -1.18 16 3 C -0.15 -1.46 9.19 71.98 0.66 -0.79 16 4 C -0.11 -1.16 4.68 30.59 0.14 -1.02 16 5 C -0.11 -1.51 4.90 30.59 0.15 -1.36 16 6 C 0.06 0.76 4.96 86.30 0.43 1.19 16 7 N -0.56 -8.59 4.58 -922.48 -4.23 -12.82 16 8 C 0.02 0.31 9.14 127.69 1.17 1.48 16 9 C 0.07 0.92 4.41 86.30 0.38 1.30 16 10 C -0.09 -1.36 2.89 -9.40 -0.03 -1.38 16 11 H 0.08 1.39 6.54 -2.39 -0.02 1.37 16 12 C -0.11 -1.32 6.42 31.78 0.20 -1.12 16 13 C 0.09 1.73 6.48 86.73 0.56 2.29 16 14 N -0.62 -18.55 3.33 -811.80 -2.70 -21.25 16 15 C 0.54 22.46 7.87 87.66 0.69 23.14 16 16 O -0.57 -29.19 16.12 -3.01 -0.05 -29.24 16 17 C -0.12 -5.04 5.35 71.24 0.38 -4.66 16 18 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 19 C -0.55 -31.97 9.50 67.96 0.65 -31.32 16 20 H 0.08 4.47 7.80 -2.92 -0.02 4.45 16 21 C 0.01 0.80 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.89 13.22 21.65 0.29 -56.61 16 23 Si 1.00 43.99 29.55 68.60 2.03 46.01 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 C 0.12 3.16 6.21 86.86 0.54 3.70 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.63 6.57 -2.39 -0.02 0.61 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.86 4.90 -2.39 -0.01 0.85 16 39 H 0.04 0.44 8.12 -2.39 -0.02 0.42 16 40 H 0.07 0.92 7.93 -2.39 -0.02 0.90 16 41 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.07 0.97 6.30 -2.39 -0.02 0.95 16 43 H 0.06 0.98 6.45 -2.39 -0.02 0.96 16 44 H 0.06 0.55 8.12 -2.39 -0.02 0.53 16 45 H 0.08 0.99 7.89 -2.39 -0.02 0.97 16 46 H 0.09 0.88 8.04 -2.39 -0.02 0.86 16 47 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 51 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 52 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 53 H 0.06 1.63 8.00 -2.38 -0.02 1.61 16 54 H 0.05 1.63 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -78.05 433.18 2.00 -76.05 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.83 Total: 17.29 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 7.00 Total: -9.44 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -6.64 Total: -90.67 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -78.05 2.00 -76.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494114593.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.662 kcal (2) G-P(sol) polarization free energy of solvation -78.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds