Wall clock time and date at job start Wed Apr 1 2020 01:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47489 * 2 1 4 4 C 1.52997 * 109.47106 * 119.99909 * 2 1 3 5 5 C 1.53008 * 109.46985 * 64.99778 * 4 2 1 6 6 C 1.52997 * 109.46985 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47028 * 180.02562 * 6 5 4 8 8 C 1.46905 * 110.99769 * 66.04572 * 7 6 5 9 9 C 1.46899 * 111.00028 * 189.99704 * 7 6 5 10 10 C 1.53009 * 109.46822 * 169.99930 * 9 7 6 11 11 H 1.08996 * 110.88649 * 51.12786 * 10 9 7 12 12 C 1.55160 * 111.00076 * 175.00311 * 10 9 7 13 13 C 1.54318 * 102.94100 * 153.61617 * 12 10 9 14 14 N 1.47026 * 107.27321 * 337.80522 * 13 12 10 15 15 C 1.34771 * 125.65100 * 178.67463 * 14 13 12 16 16 O 1.21280 * 119.99952 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99988 * 0.02691 * 15 14 13 18 18 S 1.80993 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00132 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99797 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00331 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00005 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99926 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47205 * 89.99834 * 23 21 19 25 25 H 1.48505 * 109.47119 * 209.99970 * 23 21 19 26 26 H 1.48501 * 109.47018 * 329.99852 * 23 21 19 27 27 C 1.47425 * 108.70074 * 358.94056 * 14 13 12 28 28 H 1.09007 * 109.47063 * 300.00515 * 1 2 3 29 29 H 1.09004 * 109.47013 * 59.99619 * 1 2 3 30 30 H 1.08991 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47388 * 239.99924 * 2 1 3 32 32 H 1.09003 * 109.47222 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46852 * 300.00397 * 3 2 1 34 34 H 1.08997 * 109.46804 * 60.00158 * 3 2 1 35 35 H 1.09000 * 109.47707 * 304.99978 * 4 2 1 36 36 H 1.08997 * 109.47553 * 184.99406 * 4 2 1 37 37 H 1.09000 * 109.46814 * 60.00155 * 5 4 2 38 38 H 1.08990 * 109.46901 * 299.99892 * 5 4 2 39 39 H 1.09000 * 109.47707 * 60.00200 * 6 5 4 40 40 H 1.09004 * 109.47233 * 299.99910 * 6 5 4 41 41 H 1.09004 * 109.46913 * 183.95309 * 8 7 6 42 42 H 1.08999 * 109.47405 * 303.95525 * 8 7 6 43 43 H 1.09005 * 109.47240 * 63.95945 * 8 7 6 44 44 H 1.08997 * 109.47062 * 50.00488 * 9 7 6 45 45 H 1.08993 * 109.47641 * 290.00036 * 9 7 6 46 46 H 1.09003 * 110.71997 * 35.25009 * 12 10 9 47 47 H 1.08998 * 110.71579 * 271.97918 * 12 10 9 48 48 H 1.09005 * 109.88370 * 218.39142 * 13 12 10 49 49 H 1.08997 * 110.01391 * 97.29521 * 13 12 10 50 50 H 1.08993 * 109.46871 * 299.99760 * 17 15 14 51 51 H 1.09000 * 109.46865 * 59.99842 * 17 15 14 52 52 H 0.96996 * 120.00095 * 180.02562 * 22 21 19 53 53 H 1.08996 * 110.37004 * 142.96468 * 27 14 13 54 54 H 1.09002 * 110.37038 * 265.28812 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6351 -2.1955 1.1880 6 6 2.1457 -2.9168 2.4369 7 7 1.7575 -4.3324 2.3778 8 6 2.4402 -5.0198 1.2735 9 6 2.0192 -5.0039 3.6578 10 6 1.3805 -6.3943 3.6442 11 1 1.6725 -6.9473 2.7516 12 6 1.7404 -7.1842 4.9303 13 6 0.5558 -8.1620 5.0783 14 7 -0.5773 -7.5905 4.3358 15 6 -1.7930 -8.1563 4.2002 16 8 -2.6564 -7.5924 3.5619 17 6 -2.0794 -9.4896 4.8416 18 16 -3.7844 -9.9785 4.4813 19 6 -3.8444 -11.5241 5.3252 20 1 -2.9739 -11.8857 5.8522 21 6 -5.0108 -12.2764 5.3136 22 7 -5.0557 -13.4308 5.9445 23 14 -6.5167 -11.6507 4.4026 24 1 -6.4839 -12.1364 2.9997 25 1 -7.7439 -12.1525 5.0716 26 1 -6.5196 -10.1657 4.4124 27 6 -0.1614 -6.2991 3.7590 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6054 -0.2618 2.1370 36 1 3.1263 -0.6444 1.2952 37 1 2.0698 -2.6550 0.3002 38 1 0.5489 -2.2723 1.1421 39 1 1.7115 -2.4575 3.3249 40 1 3.2320 -2.8400 2.4823 41 1 2.0825 -6.0474 1.2086 42 1 2.2298 -4.5021 0.3377 43 1 3.5151 -5.0201 1.4548 44 1 1.5924 -4.4161 4.4704 45 1 3.0949 -5.0997 3.8048 46 1 1.7987 -6.5161 5.7896 47 1 2.6757 -7.7284 4.7995 48 1 0.2930 -8.2694 6.1307 49 1 0.8199 -9.1338 4.6612 50 1 -1.3946 -10.2386 4.4441 51 1 -1.9448 -9.4102 5.9203 52 1 -5.8706 -13.9567 5.9360 53 1 -0.6073 -6.1624 2.7739 54 1 -0.4427 -5.4798 4.4207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494114596.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:12 Heat of formation + Delta-G solvation = -77.048122 kcal Electronic energy + Delta-G solvation = -27273.912249 eV Core-core repulsion = 23563.050325 eV Total energy + Delta-G solvation = -3710.861923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12779 -39.44190 -38.31076 -37.15950 -34.68565 -33.80125 -32.14857 -30.89051 -30.00421 -28.08286 -27.97156 -27.85789 -26.84673 -24.76434 -23.33095 -21.65551 -21.11332 -20.80700 -20.70867 -19.58937 -18.09862 -17.61322 -17.13343 -16.80838 -16.69788 -16.35751 -15.96333 -15.82173 -15.59232 -15.19419 -14.91318 -14.91203 -14.72065 -14.42860 -14.25198 -13.99748 -13.81793 -13.48904 -13.37489 -13.32801 -13.08223 -13.02569 -12.94658 -12.73332 -12.67974 -12.59519 -12.55268 -12.35005 -12.06079 -11.91555 -11.85971 -11.70669 -11.50013 -11.45936 -11.30509 -11.18080 -11.13745 -11.01967 -10.55585 -9.70432 -9.20354 -9.02565 -8.52617 -6.24144 0.95280 1.30505 1.44990 1.50910 1.53017 2.07943 2.24543 2.67052 2.85540 2.90962 3.47504 3.63326 3.77444 3.89165 3.90482 4.01190 4.08572 4.13299 4.20895 4.29439 4.31725 4.36804 4.40292 4.48909 4.51335 4.59847 4.64929 4.70357 4.74761 4.75994 4.78920 4.82499 4.84788 4.90774 4.92535 4.97025 4.99820 5.03759 5.09120 5.12397 5.15225 5.26598 5.29349 5.32847 5.38075 5.42563 5.55830 5.56495 5.69740 6.09829 6.15780 6.19122 6.37969 6.92480 7.05894 8.59747 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.001788 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.325568 B =15657.520357 C =16989.334386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.114 4.114 6 C 0.059 3.941 7 N -0.560 5.560 8 C 0.021 3.979 9 C 0.073 3.927 10 C -0.087 4.087 11 H 0.085 0.915 12 C -0.112 4.112 13 C 0.087 3.913 14 N -0.618 5.618 15 C 0.544 3.456 16 O -0.567 6.567 17 C -0.101 4.101 18 S -0.177 6.177 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.257 1.257 26 H -0.239 1.239 27 C 0.122 3.878 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.033 0.967 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.109 0.891 51 H 0.110 0.890 52 H 0.277 0.723 53 H 0.055 0.945 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.912 26.493 -7.463 36.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.068 4.068 7 N -0.284 5.284 8 C -0.127 4.127 9 C -0.055 4.055 10 C -0.106 4.106 11 H 0.103 0.897 12 C -0.150 4.150 13 C -0.034 4.034 14 N -0.353 5.353 15 C 0.332 3.668 16 O -0.446 6.446 17 C -0.252 4.252 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.157 4.157 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.181 1.181 26 H -0.163 1.163 27 C 0.000 4.000 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.112 0.888 47 H 0.126 0.874 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.127 0.873 51 H 0.128 0.872 52 H 0.087 0.913 53 H 0.073 0.927 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.985 27.105 -8.418 35.901 hybrid contribution 0.777 -1.121 0.660 1.515 sum 22.761 25.984 -7.758 35.404 Atomic orbital electron populations 1.21899 0.95623 1.01614 1.01628 1.21109 0.95637 0.96472 0.98328 1.21836 1.01096 0.95637 1.01825 1.21563 1.00860 0.94324 0.97832 1.21612 1.01286 0.94885 0.97391 1.22116 0.98168 0.87344 0.99179 1.61938 1.59210 1.02816 1.04454 1.22457 0.96217 0.99442 0.94563 1.22024 0.98987 0.93002 0.91515 1.22347 0.92163 0.96814 0.99292 0.89665 1.22680 0.97240 0.97378 0.97708 1.22383 0.85722 0.98434 0.96909 1.48513 1.11132 1.22539 1.53083 1.19683 0.81291 0.85925 0.79897 1.90681 1.46161 1.64912 1.42836 1.23197 0.99997 0.97190 1.04792 1.84734 1.13986 1.24824 1.71471 1.22433 1.02610 1.04760 1.37857 0.91923 1.25526 1.01016 0.94116 0.95068 1.70009 1.29855 1.13006 1.42428 0.85889 0.79555 0.81435 0.79636 1.18660 1.18086 1.16278 1.22224 0.95584 0.84146 0.98045 0.92839 0.92800 0.92991 0.91552 0.92324 0.92676 0.92706 0.91970 0.91559 0.92137 0.92233 0.90800 0.94298 0.91748 0.91242 0.94809 0.89997 0.92553 0.88769 0.87434 0.90360 0.90594 0.87259 0.87184 0.91308 0.92683 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.95 71.98 0.64 -1.17 16 2 C -0.10 -1.02 2.92 -10.79 -0.03 -1.05 16 3 C -0.15 -1.33 9.19 71.98 0.66 -0.67 16 4 C -0.11 -1.07 4.68 30.60 0.14 -0.93 16 5 C -0.11 -1.37 4.90 30.60 0.15 -1.22 16 6 C 0.06 0.70 4.96 86.30 0.43 1.13 16 7 N -0.56 -7.93 4.71 -922.42 -4.34 -12.27 16 8 C 0.02 0.27 9.15 127.69 1.17 1.44 16 9 C 0.07 0.85 4.42 86.31 0.38 1.23 16 10 C -0.09 -1.27 2.98 -9.40 -0.03 -1.30 16 11 H 0.09 1.33 6.30 -2.39 -0.02 1.32 16 12 C -0.11 -1.26 6.42 31.78 0.20 -1.06 16 13 C 0.09 1.63 6.49 86.73 0.56 2.19 16 14 N -0.62 -17.25 3.33 -811.80 -2.70 -19.95 16 15 C 0.54 20.89 7.87 87.66 0.69 21.58 16 16 O -0.57 -26.63 16.12 -3.03 -0.05 -26.67 16 17 C -0.10 -4.08 5.35 71.24 0.38 -3.70 16 18 S -0.18 -9.28 18.55 -56.49 -1.05 -10.33 16 19 C -0.53 -31.40 10.04 67.95 0.68 -30.71 16 20 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 21 C 0.05 2.87 5.50 84.86 0.47 3.34 16 22 N -0.92 -56.11 13.97 21.65 0.30 -55.81 16 23 Si 0.91 45.73 27.74 68.60 1.90 47.63 16 24 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.24 -12.04 6.74 99.48 0.67 -11.37 16 27 C 0.12 2.89 6.33 86.85 0.55 3.44 16 28 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.60 16 30 H 0.05 0.71 6.57 -2.39 -0.02 0.69 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.74 6.47 -2.39 -0.02 0.72 16 38 H 0.06 0.92 6.56 -2.39 -0.02 0.90 16 39 H 0.07 0.86 7.93 -2.39 -0.02 0.84 16 40 H 0.04 0.40 8.12 -2.39 -0.02 0.38 16 41 H 0.06 0.91 6.33 -2.38 -0.02 0.89 16 42 H 0.07 0.89 6.30 -2.39 -0.02 0.88 16 43 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 44 H 0.08 0.93 7.75 -2.39 -0.02 0.91 16 45 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16 46 H 0.09 0.83 8.04 -2.39 -0.02 0.81 16 47 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 51 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 52 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 53 H 0.05 1.60 8.03 -2.39 -0.02 1.58 16 54 H 0.07 1.55 7.91 -2.39 -0.02 1.53 16 Total: -1.00 -74.29 430.27 1.91 -72.38 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.79 Total: 12.47 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 7.05 Total: -7.45 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -6.74 Total: -88.03 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Atomic # 16 Polarization: -9.28 SS G_CDS: -1.05 Total: -10.33 kcal Total: -74.29 1.91 -72.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494114596.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.665 kcal (2) G-P(sol) polarization free energy of solvation -74.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds