Wall clock time and date at job start Wed Apr 1 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47431 * 2 1 4 4 N 1.46495 * 109.47284 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99679 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00575 * 0.02562 * 5 4 3 7 7 C 1.38811 * 119.99798 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00241 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99872 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46988 * 269.99854 * 9 7 5 11 11 H 1.48508 * 109.47107 * 149.99835 * 9 7 5 12 12 H 1.48498 * 109.47020 * 29.99982 * 9 7 5 13 13 N 1.46506 * 109.46886 * 119.99876 * 2 1 3 14 14 C 1.34773 * 119.99911 * 298.26223 * 13 2 1 15 15 O 1.21281 * 119.99991 * 5.12359 * 14 13 2 16 16 C 1.50706 * 119.99788 * 185.12933 * 14 13 2 17 17 H 1.08997 * 109.67492 * 60.51791 * 16 14 13 18 18 C 1.53321 * 109.67867 * 181.06868 * 16 14 13 19 19 C 1.52724 * 108.39155 * 189.58423 * 18 16 14 20 20 C 1.50634 * 110.58550 * 308.89442 * 19 18 16 21 21 C 1.38914 * 117.74888 * 197.42461 * 20 19 18 22 22 C 1.37931 * 120.54441 * 180.61017 * 21 20 19 23 23 C 1.38269 * 119.76813 * 359.95616 * 22 21 20 24 24 C 1.37928 * 119.77607 * 359.88636 * 23 22 21 25 25 C 1.37661 * 122.56765 * 17.78811 * 20 19 18 26 26 C 1.50632 * 122.55875 * 359.26065 * 25 20 19 27 27 C 1.53000 * 109.47084 * 239.99479 * 2 1 3 28 28 C 1.53002 * 117.49864 * 12.05198 * 27 2 1 29 29 C 1.53000 * 117.50386 * 303.38805 * 27 2 1 30 30 H 1.08999 * 109.47100 * 59.99964 * 1 2 3 31 31 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47296 * 300.00396 * 1 2 3 33 33 H 1.09005 * 109.47204 * 59.99548 * 3 2 1 34 34 H 1.08999 * 109.47008 * 300.00093 * 3 2 1 35 35 H 0.96997 * 120.00319 * 0.02562 * 4 3 2 36 36 H 0.97004 * 119.99933 * 180.02562 * 8 7 5 37 37 H 0.96993 * 119.99867 * 118.26438 * 13 2 1 38 38 H 1.09000 * 109.68197 * 309.31098 * 18 16 14 39 39 H 1.08999 * 109.68474 * 69.86148 * 18 16 14 40 40 H 1.09000 * 109.25364 * 188.61165 * 19 18 16 41 41 H 1.08997 * 109.22803 * 69.16167 * 19 18 16 42 42 H 1.07998 * 119.72662 * 0.61248 * 21 20 19 43 43 H 1.08002 * 120.11650 * 179.97438 * 22 21 20 44 44 H 1.08006 * 120.11272 * 179.86237 * 23 22 21 45 45 H 1.07996 * 119.73103 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.25189 * 257.49762 * 26 25 20 47 47 H 1.08999 * 109.22287 * 138.04996 * 26 25 20 48 48 H 1.09000 * 115.54728 * 157.71396 * 27 2 1 49 49 H 1.08995 * 117.49915 * 359.97438 * 28 27 2 50 50 H 1.08998 * 117.49822 * 145.01850 * 28 27 2 51 51 H 1.08992 * 117.50053 * 214.98350 * 29 27 2 52 52 H 1.08998 * 117.49416 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1896 2.6284 0.0002 6 1 3.6497 3.5637 -0.0002 7 6 5.5778 2.6284 0.0013 8 7 6.2359 3.7682 0.0014 9 14 6.5117 1.0105 0.0027 10 1 6.7581 0.5824 1.4031 11 1 7.8099 1.1878 -0.6964 12 1 5.7097 -0.0246 -0.6976 13 7 2.0183 -0.6906 1.1963 14 6 1.7218 -0.2100 2.4200 15 8 0.9750 0.7387 2.5343 16 6 2.3183 -0.8516 3.6463 17 1 3.4054 -0.7845 3.6036 18 6 1.8052 -0.1391 4.9032 19 6 2.6020 -0.6458 6.1035 20 6 2.6072 -2.1517 6.1383 21 6 2.9557 -2.7699 7.3325 22 6 2.9915 -4.1456 7.4252 23 6 2.6773 -4.9165 6.3212 24 6 2.3280 -4.3046 5.1355 25 6 2.2901 -2.9193 5.0404 26 6 1.8957 -2.3176 3.7171 27 6 2.0399 -0.7214 -1.2492 28 6 1.0241 -1.0303 -2.3508 29 6 1.5714 -2.1602 -1.4750 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9900 0.6024 0.0006 36 1 7.2059 3.7681 0.0018 37 1 2.5549 -1.4937 1.1075 38 1 1.9443 0.9369 4.7979 39 1 0.7474 -0.3607 5.0448 40 1 2.1507 -0.2667 7.0204 41 1 3.6278 -0.2844 6.0318 42 1 3.2005 -2.1684 8.1953 43 1 3.2638 -4.6190 8.3570 44 1 2.7058 -5.9942 6.3870 45 1 2.0823 -4.9075 4.2738 46 1 0.8142 -2.3859 3.5992 47 1 2.3805 -2.8706 2.9126 48 1 3.0546 -0.4683 -1.5568 49 1 -0.0076 -0.7200 -2.1854 50 1 1.3705 -0.9810 -3.3831 51 1 2.2775 -2.8537 -1.9314 52 1 0.9001 -2.5931 -0.7333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495280112.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:31 Heat of formation + Delta-G solvation = -2.312624 kcal Electronic energy + Delta-G solvation = -30981.358811 eV Core-core repulsion = 27138.293710 eV Total energy + Delta-G solvation = -3843.065100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.76382 -40.68482 -39.11839 -36.75128 -36.43905 -35.04629 -33.71624 -33.20426 -31.79754 -30.88870 -29.65622 -27.79454 -25.67394 -24.86514 -24.01671 -23.72906 -23.12442 -23.02427 -21.44309 -20.36511 -20.17000 -19.65578 -18.42367 -17.30325 -16.96038 -16.73993 -16.68967 -16.50421 -15.97214 -15.55075 -15.46277 -15.36786 -15.05019 -14.80024 -14.69884 -14.46948 -14.14656 -13.91032 -13.85221 -13.78680 -13.58278 -13.33507 -13.14844 -12.97508 -12.87903 -12.47023 -12.34233 -12.26704 -12.24167 -12.09422 -12.03730 -11.92705 -11.84192 -11.70646 -11.36940 -11.23566 -11.11890 -10.94279 -10.42042 -9.95050 -9.61780 -9.43129 -9.27649 -8.04520 -5.37122 0.48828 0.51105 1.30039 1.36488 1.43870 1.73384 2.17282 2.45035 2.87659 3.01114 3.26062 3.49723 3.55395 3.64451 3.72943 3.82629 3.86344 4.03962 4.07618 4.13778 4.16815 4.18593 4.25893 4.34485 4.40551 4.41278 4.53524 4.60994 4.63122 4.73875 4.79213 4.84195 4.86739 4.89507 4.89962 4.95095 4.99077 5.03928 5.09465 5.11167 5.16939 5.26040 5.27906 5.32317 5.33324 5.44243 5.62887 5.66681 5.67267 5.73909 5.78044 6.17133 6.18604 6.69108 7.05853 7.38576 7.80350 8.04535 9.17825 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.003769 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.848063 B = 7427.871368 C = 8691.496692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.209 3.791 3 C 0.148 3.852 4 N -0.743 5.743 5 C -0.233 4.233 6 H 0.045 0.955 7 C -0.064 4.064 8 N -0.986 5.986 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.246 1.246 13 N -0.708 5.708 14 C 0.522 3.478 15 O -0.567 6.567 16 C -0.104 4.104 17 H 0.095 0.905 18 C -0.094 4.094 19 C -0.078 4.078 20 C -0.090 4.090 21 C -0.132 4.132 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.088 4.088 26 C -0.060 4.060 27 C -0.183 4.183 28 C -0.165 4.165 29 C -0.151 4.151 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.367 0.633 36 H 0.258 0.742 37 H 0.408 0.592 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.111 0.889 50 H 0.099 0.901 51 H 0.107 0.893 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -24.407 8.956 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.123 3.877 3 C 0.021 3.979 4 N -0.389 5.389 5 C -0.364 4.364 6 H 0.063 0.937 7 C -0.255 4.255 8 N -0.637 5.637 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.171 1.171 13 N -0.359 5.359 14 C 0.310 3.690 15 O -0.446 6.446 16 C -0.125 4.125 17 H 0.113 0.887 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.088 4.088 26 C -0.097 4.097 27 C -0.201 4.201 28 C -0.203 4.203 29 C -0.188 4.188 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.201 0.799 36 H 0.067 0.933 37 H 0.244 0.756 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.149 0.851 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.102 0.898 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.129 0.871 50 H 0.117 0.883 51 H 0.125 0.875 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.838 -23.495 9.023 27.813 hybrid contribution 1.407 0.064 -0.065 1.410 sum -10.431 -23.431 8.958 27.167 Atomic orbital electron populations 1.22192 0.92853 1.03149 1.02912 1.19835 0.94423 0.89881 0.83527 1.21070 0.83043 0.95767 0.98000 1.42439 1.02086 1.03607 1.90761 1.18999 0.89870 0.86286 1.41287 0.93715 1.25517 0.96972 1.00432 1.02593 1.69905 1.07114 1.26829 1.59827 0.85403 0.77970 0.80176 0.78226 1.20308 1.22074 1.17058 1.45961 1.55103 1.30203 1.04641 1.20801 0.80175 0.82964 0.85104 1.90626 1.37700 1.29219 1.87023 1.21328 1.01575 0.97062 0.92552 0.88735 1.21267 0.99959 0.99355 0.92617 1.20483 1.00870 0.91346 0.98823 1.19797 0.99921 0.95464 0.93823 1.21383 1.00559 0.95607 0.97443 1.21379 0.99943 0.93685 0.99674 1.21386 0.99436 1.00981 0.92931 1.21386 1.00162 0.93527 0.99133 1.19648 1.00460 0.93983 0.94701 1.20375 1.02165 0.91745 0.95402 1.22317 1.00032 1.00464 0.97336 1.23193 0.98973 1.02508 0.95582 1.23068 1.03354 0.89665 1.02743 0.90842 0.90114 0.92446 0.95958 0.96023 0.79903 0.93340 0.75554 0.92637 0.91370 0.89287 0.90765 0.85108 0.84223 0.83969 0.84223 0.89763 0.88293 0.89278 0.87094 0.88282 0.87475 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 7.06 71.98 0.51 -3.46 16 2 C 0.21 6.26 0.54 3.60 0.00 6.26 16 3 C 0.15 6.29 4.94 86.38 0.43 6.72 16 4 N -0.74 -36.16 4.83 -343.46 -1.66 -37.82 16 5 C -0.23 -14.06 10.47 84.03 0.88 -13.18 16 6 H 0.04 3.02 8.06 -2.91 -0.02 3.00 16 7 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 8 N -0.99 -65.17 13.97 21.65 0.30 -64.87 16 9 Si 0.96 45.81 27.74 68.60 1.90 47.71 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 13 N -0.71 -19.21 4.66 -422.92 -1.97 -21.18 16 14 C 0.52 16.16 6.55 87.66 0.57 16.73 16 15 O -0.57 -22.03 12.08 -3.03 -0.04 -22.06 16 16 C -0.10 -2.61 2.56 -11.52 -0.03 -2.64 16 17 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 18 C -0.09 -2.43 4.72 30.61 0.14 -2.28 16 19 C -0.08 -1.68 5.67 29.74 0.17 -1.51 16 20 C -0.09 -1.85 5.74 -19.86 -0.11 -1.97 16 21 C -0.13 -2.37 9.61 22.36 0.21 -2.15 16 22 C -0.13 -1.99 10.05 22.20 0.22 -1.77 16 23 C -0.13 -1.90 10.05 22.20 0.22 -1.68 16 24 C -0.12 -1.99 9.61 22.36 0.21 -1.77 16 25 C -0.09 -1.69 5.74 -19.86 -0.11 -1.81 16 26 C -0.06 -1.10 4.81 29.74 0.14 -0.95 16 27 C -0.18 -4.70 4.86 -10.79 -0.05 -4.75 16 28 C -0.17 -3.28 9.63 30.62 0.29 -2.99 16 29 C -0.15 -2.57 9.72 30.62 0.30 -2.28 16 30 H 0.07 1.77 6.81 -2.39 -0.02 1.76 16 31 H 0.08 1.64 7.00 -2.39 -0.02 1.62 16 32 H 0.06 1.80 6.13 -2.38 -0.01 1.79 16 33 H 0.02 1.09 6.22 -2.38 -0.01 1.08 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.37 16.50 4.49 -92.71 -0.42 16.08 16 36 H 0.26 16.13 8.31 -92.70 -0.77 15.36 16 37 H 0.41 8.73 7.86 -92.71 -0.73 8.00 16 38 H 0.05 1.71 7.80 -2.39 -0.02 1.70 16 39 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.13 1.93 8.05 -2.91 -0.02 1.91 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.14 1.59 8.05 -2.91 -0.02 1.57 16 46 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 47 H 0.10 1.38 7.71 -2.39 -0.02 1.36 16 48 H 0.09 2.82 7.09 -2.39 -0.02 2.81 16 49 H 0.11 2.00 5.88 -2.39 -0.01 1.99 16 50 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.11 1.55 7.39 -2.39 -0.02 1.53 16 Total: -1.00 -77.57 399.80 2.74 -74.84 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -0.27 Total: 42.27 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 4.47 Total: -18.89 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -3.33 Total: -123.87 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.04 Total: -22.06 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Total: -77.57 2.74 -74.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495280112.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.525 kcal (2) G-P(sol) polarization free energy of solvation -77.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds