Wall clock time and date at job start Wed Apr 1 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47032 * 2 1 4 4 N 1.46497 * 109.46816 * 299.99990 * 3 2 1 5 5 C 1.36941 * 119.99776 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00118 * 0.02562 * 5 4 3 7 7 C 1.38811 * 120.00144 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99814 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00057 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47279 * 89.99699 * 9 7 5 11 11 H 1.48499 * 109.46802 * 209.99834 * 9 7 5 12 12 H 1.48493 * 109.47142 * 329.99590 * 9 7 5 13 13 N 1.46495 * 109.47181 * 239.99901 * 2 1 3 14 14 C 1.34780 * 120.00309 * 175.43683 * 13 2 1 15 15 O 1.21285 * 119.99631 * 356.26223 * 14 13 2 16 16 C 1.50700 * 120.00310 * 176.25684 * 14 13 2 17 17 H 1.09005 * 109.67091 * 60.51015 * 16 14 13 18 18 C 1.53317 * 109.67769 * 181.05727 * 16 14 13 19 19 C 1.52737 * 108.37810 * 189.58587 * 18 16 14 20 20 C 1.50625 * 110.57725 * 308.84382 * 19 18 16 21 21 C 1.38909 * 117.74913 * 197.51643 * 20 19 18 22 22 C 1.37943 * 120.54232 * 180.59294 * 21 20 19 23 23 C 1.38263 * 119.77139 * 359.96947 * 22 21 20 24 24 C 1.37937 * 119.77239 * 359.87399 * 23 22 21 25 25 C 1.37662 * 122.56330 * 17.85325 * 20 19 18 26 26 C 1.50632 * 122.56582 * 359.25172 * 25 20 19 27 27 C 1.53000 * 109.47326 * 119.99816 * 2 1 3 28 28 C 1.53000 * 117.49611 * 121.83372 * 27 2 1 29 29 C 1.53001 * 117.49843 * 53.17596 * 27 2 1 30 30 H 1.08995 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46946 * 300.00078 * 1 2 3 32 32 H 1.08997 * 109.46996 * 59.99743 * 1 2 3 33 33 H 1.08997 * 109.47002 * 60.00067 * 3 2 1 34 34 H 1.09003 * 109.46604 * 180.02562 * 3 2 1 35 35 H 0.96994 * 120.00530 * 0.02562 * 4 3 2 36 36 H 0.97002 * 119.99860 * 180.02562 * 8 7 5 37 37 H 0.97003 * 119.99965 * 355.71874 * 13 2 1 38 38 H 1.09002 * 109.68642 * 309.31117 * 18 16 14 39 39 H 1.08996 * 109.68414 * 69.86600 * 18 16 14 40 40 H 1.09005 * 109.25157 * 188.56323 * 19 18 16 41 41 H 1.09000 * 109.25450 * 69.13293 * 19 18 16 42 42 H 1.07994 * 119.73030 * 0.56790 * 21 20 19 43 43 H 1.07999 * 120.10811 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.11244 * 179.89841 * 23 22 21 45 45 H 1.07993 * 119.72259 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.24894 * 257.44137 * 26 25 20 47 47 H 1.09001 * 109.21889 * 137.99968 * 26 25 20 48 48 H 1.08994 * 115.54984 * 267.50771 * 27 2 1 49 49 H 1.08990 * 117.50134 * 0.02562 * 28 27 2 50 50 H 1.09001 * 117.49346 * 145.02324 * 28 27 2 51 51 H 1.08992 * 117.49957 * 214.98257 * 29 27 2 52 52 H 1.09002 * 117.49496 * 359.97108 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5045 3.9687 -0.7027 7 6 1.4197 4.0985 -2.5463 8 7 0.6626 3.4590 -3.4124 9 14 1.8721 5.8865 -2.8426 10 1 3.1343 5.9552 -3.6220 11 1 0.7842 6.5529 -3.6025 12 1 2.0575 6.5728 -1.5389 13 7 2.0183 -0.6906 -1.1961 14 6 3.3399 -0.7340 -1.4569 15 8 4.1194 -0.1442 -0.7389 16 6 3.8492 -1.5154 -2.6407 17 1 3.4222 -1.1110 -3.5584 18 6 5.3787 -1.4262 -2.6988 19 6 5.8454 -2.0174 -4.0275 20 6 5.2427 -3.3812 -4.2410 21 6 5.8323 -4.2076 -5.1891 22 6 5.3200 -5.4636 -5.4398 23 6 4.2110 -5.9047 -4.7418 24 6 3.6261 -5.0868 -3.7976 25 6 4.1415 -3.8222 -3.5425 26 6 3.4570 -2.9841 -2.4946 27 6 2.0401 -0.7212 1.2492 28 6 2.9504 -1.9334 1.0429 29 6 1.5087 -2.1306 1.5177 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 0.9937 1.6619 -1.8345 36 1 0.3393 3.9163 -4.2044 37 1 1.3902 -1.1132 -1.8026 38 1 5.6885 -0.3833 -2.6319 39 1 5.8110 -1.9917 -1.8734 40 1 6.9321 -2.1015 -4.0215 41 1 5.5410 -1.3585 -4.8407 42 1 6.6985 -3.8639 -5.7347 43 1 5.7837 -6.1002 -6.1788 44 1 3.8044 -6.8864 -4.9348 45 1 2.7602 -5.4322 -3.2525 46 1 3.7483 -3.3372 -1.5053 47 1 2.3771 -3.0807 -2.6069 48 1 2.2371 -0.0848 2.1119 49 1 3.1863 -2.2169 0.0172 50 1 3.7462 -2.0947 1.7701 51 1 1.3565 -2.4216 2.5570 52 1 0.7953 -2.5438 0.8046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495280113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:35 Heat of formation + Delta-G solvation = 20.852904 kcal Electronic energy + Delta-G solvation = -31183.377228 eV Core-core repulsion = 27341.316660 eV Total energy + Delta-G solvation = -3842.060568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.75122 -39.72430 -37.43130 -35.59244 -34.87733 -33.35474 -32.71704 -31.37051 -30.31299 -29.54858 -28.72839 -25.98219 -24.42108 -23.69899 -23.12523 -22.31281 -22.07025 -21.31862 -20.72147 -19.19996 -18.93830 -17.22551 -17.04343 -16.51174 -15.97913 -15.48697 -15.35811 -14.99202 -14.48430 -14.37318 -14.27252 -13.80849 -13.73224 -13.72094 -13.27090 -13.18024 -12.96714 -12.84327 -12.53954 -12.20324 -12.11157 -12.01225 -11.79071 -11.62667 -11.48479 -11.22452 -11.08267 -10.89475 -10.84320 -10.80092 -10.74748 -10.66585 -10.41803 -10.17832 -10.01097 -9.78072 -9.61000 -9.13454 -8.87802 -8.65837 -8.65090 -8.48883 -6.76613 -5.69111 -2.94334 1.23942 1.25359 3.13273 3.48295 3.52763 3.53751 3.55304 3.62158 4.04184 4.48223 4.57055 4.65226 4.81698 4.85392 4.88098 4.89336 4.99980 5.05857 5.12881 5.17131 5.22529 5.34565 5.41927 5.45753 5.48625 5.56485 5.63958 5.67925 5.69007 5.75772 5.79200 5.79741 5.85706 5.90344 5.98877 6.05070 6.08803 6.18660 6.21909 6.30949 6.35409 6.35539 6.37677 6.41591 6.42273 6.56959 6.66813 6.69163 6.89801 7.01288 7.26772 7.79335 8.00181 8.51019 8.76020 9.62210 10.21507 10.57118 11.54287 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.003549 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.477148 B = 7887.013417 C = 9575.270615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.200 3.800 3 C 0.139 3.861 4 N -0.725 5.725 5 C -0.226 4.226 6 H 0.068 0.932 7 C -0.018 4.018 8 N -0.938 5.938 9 Si 0.904 3.096 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.716 5.716 14 C 0.529 3.471 15 O -0.521 6.521 16 C -0.109 4.109 17 H 0.100 0.900 18 C -0.096 4.096 19 C -0.084 4.084 20 C -0.071 4.071 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.072 4.072 26 C -0.071 4.071 27 C -0.141 4.141 28 C -0.166 4.166 29 C -0.184 4.184 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.018 0.982 34 H 0.057 0.943 35 H 0.381 0.619 36 H 0.252 0.748 37 H 0.394 0.606 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.274 -20.997 0.952 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.114 3.886 3 C 0.011 3.989 4 N -0.370 5.370 5 C -0.357 4.357 6 H 0.086 0.914 7 C -0.213 4.213 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.367 5.367 14 C 0.315 3.685 15 O -0.397 6.397 16 C -0.131 4.131 17 H 0.119 0.881 18 C -0.134 4.134 19 C -0.121 4.121 20 C -0.071 4.071 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.072 4.072 26 C -0.108 4.108 27 C -0.161 4.161 28 C -0.203 4.203 29 C -0.221 4.221 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.215 0.785 36 H 0.062 0.938 37 H 0.227 0.773 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.125 0.875 49 H 0.114 0.886 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.908 -20.392 1.525 21.286 hybrid contribution -0.348 0.628 -0.860 1.120 sum 5.560 -19.764 0.665 20.542 Atomic orbital electron populations 1.21984 0.93350 1.01208 1.03975 1.20036 0.93539 0.92652 0.82383 1.21172 0.99258 0.87729 0.90709 1.42236 1.61141 1.10436 1.23153 1.19234 1.24634 0.87666 1.04194 0.91449 1.24658 1.00923 0.98117 0.97562 1.69647 1.39924 1.35993 1.13182 0.86214 0.77346 0.85231 0.77613 1.21921 1.21939 1.20894 1.46013 1.07205 1.57248 1.26255 1.20093 0.82410 0.80569 0.85406 1.90660 1.55820 1.43718 1.49478 1.21359 0.98169 0.94897 0.98662 0.88149 1.21332 0.92892 1.02614 0.96589 1.20558 1.00203 0.92677 0.98651 1.19714 0.95133 0.96281 0.95926 1.21171 1.00293 0.94318 0.98171 1.21048 0.96905 0.96263 1.00021 1.21029 0.96640 0.99698 0.97020 1.21143 1.00188 0.93830 0.98507 1.19548 0.95487 0.94740 0.97415 1.20474 1.00008 0.92511 0.97770 1.22546 1.03879 0.90146 0.99532 1.23003 0.92727 1.02391 1.02220 1.22963 0.97488 1.00209 1.01436 0.92981 0.91163 0.90789 0.96446 0.92535 0.78501 0.93802 0.77266 0.89894 0.91298 0.90490 0.90219 0.86233 0.86323 0.86287 0.86188 0.90092 0.90305 0.87545 0.88649 0.89663 0.89457 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.18 37.16 0.30 -1.88 16 2 C 0.20 3.23 0.55 -131.82 -0.07 3.16 16 3 C 0.14 2.97 4.84 -4.04 -0.02 2.95 16 4 N -0.73 -18.42 5.18 -59.90 -0.31 -18.73 16 5 C -0.23 -6.48 9.99 -15.06 -0.15 -6.63 16 6 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 7 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 8 N -0.94 -28.32 13.06 55.49 0.72 -27.59 16 9 Si 0.90 23.02 29.55 -169.99 -5.02 17.99 16 10 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.72 -10.73 4.10 -47.60 -0.20 -10.92 16 14 C 0.53 8.51 4.36 -10.98 -0.05 8.47 16 15 O -0.52 -10.20 12.10 5.55 0.07 -10.13 16 16 C -0.11 -1.44 2.55 -91.75 -0.23 -1.67 16 17 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 18 C -0.10 -1.25 4.72 -26.70 -0.13 -1.37 16 19 C -0.08 -0.92 5.67 -28.05 -0.16 -1.08 16 20 C -0.07 -0.78 5.74 -104.62 -0.60 -1.38 16 21 C -0.12 -1.21 9.61 -39.44 -0.38 -1.59 16 22 C -0.12 -1.15 10.05 -39.68 -0.40 -1.54 16 23 C -0.13 -1.15 10.05 -39.68 -0.40 -1.55 16 24 C -0.12 -1.17 9.61 -39.44 -0.38 -1.55 16 25 C -0.07 -0.79 5.74 -104.61 -0.60 -1.39 16 26 C -0.07 -0.75 4.66 -28.06 -0.13 -0.88 16 27 C -0.14 -2.03 4.86 -90.62 -0.44 -2.47 16 28 C -0.17 -2.21 8.51 -26.69 -0.23 -2.43 16 29 C -0.18 -2.13 9.68 -26.69 -0.26 -2.38 16 30 H 0.05 0.62 6.89 -51.93 -0.36 0.27 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.27 6.86 -51.93 -0.36 0.91 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 1.35 5.74 -51.93 -0.30 1.05 16 35 H 0.38 9.89 6.35 -40.82 -0.26 9.63 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.39 5.10 8.23 -40.82 -0.34 4.77 16 38 H 0.08 1.23 7.80 -51.93 -0.41 0.83 16 39 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.97 8.05 -52.49 -0.42 0.54 16 46 H 0.08 0.86 6.78 -51.93 -0.35 0.51 16 47 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 48 H 0.11 1.57 8.06 -51.93 -0.42 1.15 16 49 H 0.10 1.28 3.53 -51.93 -0.18 1.09 16 50 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 52 H 0.09 0.97 7.18 -51.93 -0.37 0.60 16 LS Contribution 398.88 15.07 6.01 6.01 Total: -1.00 -32.84 398.88 -11.50 -44.34 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -8.36 Total: 14.86 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -4.41 Total: -15.84 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.22 Total: -57.24 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.84 -11.50 -44.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495280113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.197 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds