Wall clock time and date at job start Wed Apr 1 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 N 1.46497 * 109.47425 * 300.00405 * 3 2 1 5 5 C 1.36935 * 119.99796 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00485 * 0.02562 * 5 4 3 7 7 C 1.38820 * 119.99834 * 179.97438 * 5 4 3 8 8 N 1.31618 * 119.99759 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00025 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47133 * 90.00463 * 9 7 5 11 11 H 1.48501 * 109.46948 * 210.00515 * 9 7 5 12 12 H 1.48500 * 109.47141 * 330.00123 * 9 7 5 13 13 N 1.46505 * 109.46691 * 240.00464 * 2 1 3 14 14 C 1.34776 * 119.99978 * 175.38256 * 13 2 1 15 15 O 1.21289 * 119.99747 * 355.83625 * 14 13 2 16 16 C 1.50696 * 120.00242 * 175.83894 * 14 13 2 17 17 H 1.09001 * 109.67682 * 299.48155 * 16 14 13 18 18 C 1.53317 * 109.71357 * 178.95059 * 16 14 13 19 19 C 1.52732 * 108.41544 * 170.44864 * 18 16 14 20 20 C 1.50628 * 110.59577 * 51.08646 * 19 18 16 21 21 C 1.38917 * 117.75626 * 162.40079 * 20 19 18 22 22 C 1.37936 * 120.54153 * 179.30372 * 21 20 19 23 23 C 1.38265 * 119.77251 * 0.03352 * 22 21 20 24 24 C 1.37935 * 119.77506 * 0.14650 * 23 22 21 25 25 C 1.37660 * 122.56106 * 342.01397 * 20 19 18 26 26 C 1.50627 * 122.55787 * 1.14022 * 25 20 19 27 27 C 1.52996 * 109.47335 * 120.00372 * 2 1 3 28 28 C 1.52999 * 117.49481 * 121.76110 * 27 2 1 29 29 C 1.52996 * 60.00212 * 252.50993 * 28 27 2 30 30 H 1.09000 * 109.46809 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46893 * 299.99072 * 1 2 3 32 32 H 1.08996 * 109.47518 * 59.99628 * 1 2 3 33 33 H 1.09002 * 109.46513 * 60.00695 * 3 2 1 34 34 H 1.09000 * 109.47042 * 180.02562 * 3 2 1 35 35 H 0.96998 * 119.99691 * 0.02562 * 4 3 2 36 36 H 0.96999 * 119.99582 * 179.97438 * 8 7 5 37 37 H 0.96997 * 120.00178 * 355.38544 * 13 2 1 38 38 H 1.09005 * 109.67622 * 290.18329 * 18 16 14 39 39 H 1.09004 * 109.67670 * 50.68127 * 18 16 14 40 40 H 1.08994 * 109.24938 * 290.79403 * 19 18 16 41 41 H 1.08997 * 109.25248 * 171.37293 * 19 18 16 42 42 H 1.07998 * 119.73293 * 359.32550 * 21 20 19 43 43 H 1.07998 * 120.11305 * 180.02562 * 22 21 20 44 44 H 1.08000 * 120.11285 * 180.12753 * 23 22 21 45 45 H 1.07992 * 119.73223 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.25775 * 102.15693 * 26 25 20 47 47 H 1.08998 * 109.25871 * 221.60033 * 26 25 20 48 48 H 1.08994 * 115.55337 * 267.47003 * 27 2 1 49 49 H 1.08998 * 117.50661 * 0.02562 * 28 27 2 50 50 H 1.09008 * 117.49615 * 145.02446 * 28 27 2 51 51 H 1.08995 * 117.50160 * 252.51227 * 29 28 27 52 52 H 1.09002 * 117.49232 * 107.49000 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4444 -1.4124 6 1 2.5030 3.9692 -0.7015 7 6 1.4197 4.0987 -2.5460 8 7 0.6634 3.4589 -3.4127 9 14 1.8710 5.8871 -2.8416 10 1 3.1339 5.9569 -3.6195 11 1 0.7833 6.5528 -3.6026 12 1 2.0543 6.5733 -1.5375 13 7 2.0183 -0.6906 -1.1963 14 6 3.3397 -0.7330 -1.4577 15 8 4.1184 -0.1361 -0.7447 16 6 3.8498 -1.5219 -2.6360 17 1 3.5803 -2.5716 -2.5192 18 6 5.3743 -1.3875 -2.7275 19 6 5.8843 -2.3783 -3.7720 20 6 5.1173 -2.2318 -5.0601 21 6 5.6767 -2.7720 -6.2112 22 6 5.0170 -2.6835 -7.4193 23 6 3.7891 -2.0513 -7.4864 24 6 3.2337 -1.5110 -6.3453 25 6 3.8976 -1.5972 -5.1281 26 6 3.2397 -0.9744 -3.9247 27 6 2.0401 -0.7213 1.2491 28 6 2.9491 -1.9345 1.0426 29 6 1.5081 -2.1305 1.5179 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 0.9936 1.6619 -1.8343 36 1 0.3400 3.9163 -4.2046 37 1 1.3905 -1.1172 -1.8002 38 1 5.6360 -0.3723 -3.0259 39 1 5.8214 -1.6120 -1.7590 40 1 5.7620 -3.3933 -3.3943 41 1 6.9414 -2.1902 -3.9598 42 1 6.6358 -3.2658 -6.1597 43 1 5.4581 -3.1063 -8.3098 44 1 3.2669 -1.9806 -8.4290 45 1 2.2748 -1.0170 -6.3985 46 1 3.3792 0.1061 -3.9576 47 1 2.1733 -1.1994 -3.9413 48 1 2.2377 -0.0850 2.1117 49 1 3.1841 -2.2186 0.0168 50 1 3.7452 -2.0965 1.7694 51 1 1.3561 -2.4213 2.5573 52 1 0.7947 -2.5436 0.8048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495280114.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:38 Heat of formation + Delta-G solvation = 20.474067 kcal Electronic energy + Delta-G solvation = -31338.631551 eV Core-core repulsion = 27496.554555 eV Total energy + Delta-G solvation = -3842.076995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.66131 -39.65664 -37.42483 -35.49626 -34.89464 -33.35297 -32.56699 -31.35290 -30.23341 -29.51312 -28.64256 -25.98465 -24.31933 -23.68160 -23.05249 -22.13408 -22.07516 -21.31681 -20.65105 -19.20207 -18.87808 -17.27284 -16.89733 -16.37934 -15.97863 -15.47341 -15.35284 -14.88708 -14.42428 -14.36690 -14.12239 -13.83935 -13.68758 -13.53125 -13.24055 -13.09040 -12.83468 -12.80475 -12.54673 -12.11574 -12.08597 -11.96330 -11.78753 -11.47297 -11.36972 -11.22576 -11.05622 -10.92528 -10.81915 -10.75242 -10.73508 -10.65756 -10.34758 -10.18420 -10.01069 -9.77479 -9.61013 -9.13109 -8.72499 -8.65008 -8.50788 -8.48947 -6.76482 -5.69473 -2.94287 1.39095 1.40313 3.12548 3.48212 3.53789 3.54073 3.55365 3.77395 4.04323 4.59197 4.65121 4.68289 4.88473 4.91251 4.95737 5.01923 5.10594 5.14050 5.18047 5.19438 5.29177 5.39077 5.48719 5.52225 5.55402 5.59899 5.67586 5.71528 5.76376 5.79029 5.80217 5.91417 6.00521 6.02435 6.07926 6.08746 6.10193 6.19399 6.29258 6.30696 6.35425 6.41440 6.43089 6.51707 6.54452 6.66783 6.68791 6.72305 7.01462 7.05110 7.27009 7.79513 8.00334 8.50784 8.76284 9.62231 10.21302 10.57205 11.53903 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.004560 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.552005 B = 6138.483957 C = 8680.872881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.200 3.800 3 C 0.139 3.861 4 N -0.725 5.725 5 C -0.225 4.225 6 H 0.067 0.933 7 C -0.016 4.016 8 N -0.937 5.937 9 Si 0.902 3.098 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.716 5.716 14 C 0.528 3.472 15 O -0.521 6.521 16 C -0.105 4.105 17 H 0.091 0.909 18 C -0.098 4.098 19 C -0.079 4.079 20 C -0.078 4.078 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.065 4.065 26 C -0.074 4.074 27 C -0.142 4.142 28 C -0.163 4.163 29 C -0.184 4.184 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.017 0.983 34 H 0.057 0.943 35 H 0.381 0.619 36 H 0.252 0.748 37 H 0.394 0.606 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.124 0.876 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.087 0.913 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.802 -18.315 -0.827 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.114 3.886 3 C 0.011 3.989 4 N -0.369 5.369 5 C -0.357 4.357 6 H 0.085 0.915 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.734 3.266 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.367 5.367 14 C 0.314 3.686 15 O -0.397 6.397 16 C -0.126 4.126 17 H 0.109 0.891 18 C -0.136 4.136 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.065 4.065 26 C -0.111 4.111 27 C -0.162 4.162 28 C -0.200 4.200 29 C -0.221 4.221 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.215 0.785 36 H 0.062 0.938 37 H 0.227 0.773 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.142 0.858 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.125 0.875 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.436 -17.705 -0.259 18.523 hybrid contribution -0.346 0.741 -0.910 1.223 sum 5.090 -16.964 -1.168 17.749 Atomic orbital electron populations 1.21985 0.93365 1.01203 1.03966 1.20039 0.93532 0.92675 0.82371 1.21170 0.99282 0.87690 0.90711 1.42220 1.61138 1.10381 1.23150 1.19229 1.24671 0.87665 1.04138 0.91485 1.24634 1.00926 0.98019 0.97543 1.69639 1.39955 1.35944 1.13160 0.86241 0.77354 0.85353 0.77624 1.21945 1.21943 1.20890 1.46014 1.07237 1.57148 1.26350 1.20130 0.82407 0.80762 0.85280 1.90660 1.55854 1.43282 1.49856 1.21329 0.97583 1.00044 0.93647 0.89076 1.21353 0.92941 1.00247 0.99076 1.20503 0.99017 0.99899 0.92217 1.19652 0.94523 0.98293 0.95338 1.21110 0.99935 1.00609 0.92466 1.21016 0.95652 1.00325 0.97548 1.21049 0.96033 0.98850 0.98259 1.21240 1.00386 0.99577 0.92185 1.19603 0.94197 0.97686 0.95046 1.20458 0.99159 1.01625 0.89836 1.22557 1.03892 0.90137 0.99568 1.22906 0.92773 1.02339 1.01992 1.22956 0.97499 1.00205 1.01448 0.92994 0.91166 0.90792 0.96485 0.92501 0.78498 0.93825 0.77284 0.90777 0.90420 0.90783 0.90613 0.86455 0.86449 0.86275 0.85811 0.88810 0.90267 0.87516 0.89017 0.89598 0.89430 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.18 37.16 0.30 -1.87 16 2 C 0.20 3.22 0.55 -131.82 -0.07 3.14 16 3 C 0.14 2.96 4.83 -4.04 -0.02 2.94 16 4 N -0.72 -18.18 5.18 -59.91 -0.31 -18.49 16 5 C -0.23 -6.43 9.99 -15.06 -0.15 -6.58 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 8 N -0.94 -27.95 13.06 55.49 0.72 -27.23 16 9 Si 0.90 22.98 29.55 -169.99 -5.02 17.95 16 10 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.72 -10.67 4.13 -47.61 -0.20 -10.87 16 14 C 0.53 8.46 4.16 -10.99 -0.05 8.41 16 15 O -0.52 -10.17 12.13 5.55 0.07 -10.11 16 16 C -0.10 -1.37 2.56 -91.75 -0.23 -1.61 16 17 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 18 C -0.10 -1.28 4.72 -26.71 -0.13 -1.41 16 19 C -0.08 -0.85 5.67 -28.06 -0.16 -1.01 16 20 C -0.08 -0.95 5.74 -104.62 -0.60 -1.55 16 21 C -0.12 -1.36 9.61 -39.44 -0.38 -1.73 16 22 C -0.13 -1.36 10.05 -39.68 -0.40 -1.76 16 23 C -0.12 -1.41 10.05 -39.68 -0.40 -1.81 16 24 C -0.12 -1.49 9.61 -39.44 -0.38 -1.86 16 25 C -0.07 -0.87 5.74 -104.62 -0.60 -1.47 16 26 C -0.07 -1.03 4.81 -28.06 -0.13 -1.16 16 27 C -0.14 -2.03 4.87 -90.62 -0.44 -2.48 16 28 C -0.16 -2.16 8.53 -26.73 -0.23 -2.39 16 29 C -0.18 -2.14 9.68 -26.73 -0.26 -2.40 16 30 H 0.05 0.62 6.89 -51.93 -0.36 0.27 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.26 6.86 -51.93 -0.36 0.90 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.36 5.72 -51.93 -0.30 1.06 16 35 H 0.38 9.74 6.35 -40.82 -0.26 9.48 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.39 5.07 7.98 -40.82 -0.33 4.74 16 38 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.08 1.01 7.80 -51.93 -0.41 0.61 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.12 1.04 8.05 -52.49 -0.42 0.61 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 45 H 0.12 1.52 8.05 -52.49 -0.42 1.10 16 46 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 47 H 0.08 1.01 7.72 -51.93 -0.40 0.61 16 48 H 0.11 1.57 8.06 -51.93 -0.42 1.15 16 49 H 0.09 1.25 5.17 -51.93 -0.27 0.99 16 50 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 51 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 52 H 0.09 0.99 7.17 -51.93 -0.37 0.62 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -32.35 401.42 -11.60 -43.95 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -8.50 Total: 15.91 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -4.42 Total: -17.16 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.22 Total: -56.59 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.35 -11.60 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495280114.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.424 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds