Wall clock time and date at job start Wed Apr 1 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 N 1.46497 * 109.47425 * 300.00405 * 3 2 1 5 5 C 1.36935 * 119.99796 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00485 * 0.02562 * 5 4 3 7 7 C 1.38820 * 119.99834 * 179.97438 * 5 4 3 8 8 N 1.31618 * 119.99759 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00025 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47133 * 90.00463 * 9 7 5 11 11 H 1.48501 * 109.46948 * 210.00515 * 9 7 5 12 12 H 1.48500 * 109.47141 * 330.00123 * 9 7 5 13 13 N 1.46505 * 109.46691 * 240.00464 * 2 1 3 14 14 C 1.34776 * 119.99978 * 175.38256 * 13 2 1 15 15 O 1.21289 * 119.99747 * 355.83625 * 14 13 2 16 16 C 1.50696 * 120.00242 * 175.83894 * 14 13 2 17 17 H 1.09001 * 109.67682 * 299.48155 * 16 14 13 18 18 C 1.53317 * 109.71357 * 178.95059 * 16 14 13 19 19 C 1.52732 * 108.41544 * 170.44864 * 18 16 14 20 20 C 1.50628 * 110.59577 * 51.08646 * 19 18 16 21 21 C 1.38917 * 117.75626 * 162.40079 * 20 19 18 22 22 C 1.37936 * 120.54153 * 179.30372 * 21 20 19 23 23 C 1.38265 * 119.77251 * 0.03352 * 22 21 20 24 24 C 1.37935 * 119.77506 * 0.14650 * 23 22 21 25 25 C 1.37660 * 122.56106 * 342.01397 * 20 19 18 26 26 C 1.50627 * 122.55787 * 1.14022 * 25 20 19 27 27 C 1.52996 * 109.47335 * 120.00372 * 2 1 3 28 28 C 1.52999 * 117.49481 * 121.76110 * 27 2 1 29 29 C 1.52996 * 60.00212 * 252.50993 * 28 27 2 30 30 H 1.09000 * 109.46809 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46893 * 299.99072 * 1 2 3 32 32 H 1.08996 * 109.47518 * 59.99628 * 1 2 3 33 33 H 1.09002 * 109.46513 * 60.00695 * 3 2 1 34 34 H 1.09000 * 109.47042 * 180.02562 * 3 2 1 35 35 H 0.96998 * 119.99691 * 0.02562 * 4 3 2 36 36 H 0.96999 * 119.99582 * 179.97438 * 8 7 5 37 37 H 0.96997 * 120.00178 * 355.38544 * 13 2 1 38 38 H 1.09005 * 109.67622 * 290.18329 * 18 16 14 39 39 H 1.09004 * 109.67670 * 50.68127 * 18 16 14 40 40 H 1.08994 * 109.24938 * 290.79403 * 19 18 16 41 41 H 1.08997 * 109.25248 * 171.37293 * 19 18 16 42 42 H 1.07998 * 119.73293 * 359.32550 * 21 20 19 43 43 H 1.07998 * 120.11305 * 180.02562 * 22 21 20 44 44 H 1.08000 * 120.11285 * 180.12753 * 23 22 21 45 45 H 1.07992 * 119.73223 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.25775 * 102.15693 * 26 25 20 47 47 H 1.08998 * 109.25871 * 221.60033 * 26 25 20 48 48 H 1.08994 * 115.55337 * 267.47003 * 27 2 1 49 49 H 1.08998 * 117.50661 * 0.02562 * 28 27 2 50 50 H 1.09008 * 117.49615 * 145.02446 * 28 27 2 51 51 H 1.08995 * 117.50160 * 252.51227 * 29 28 27 52 52 H 1.09002 * 117.49232 * 107.49000 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4444 -1.4124 6 1 2.5030 3.9692 -0.7015 7 6 1.4197 4.0987 -2.5460 8 7 0.6634 3.4589 -3.4127 9 14 1.8710 5.8871 -2.8416 10 1 3.1339 5.9569 -3.6195 11 1 0.7833 6.5528 -3.6026 12 1 2.0543 6.5733 -1.5375 13 7 2.0183 -0.6906 -1.1963 14 6 3.3397 -0.7330 -1.4577 15 8 4.1184 -0.1361 -0.7447 16 6 3.8498 -1.5219 -2.6360 17 1 3.5803 -2.5716 -2.5192 18 6 5.3743 -1.3875 -2.7275 19 6 5.8843 -2.3783 -3.7720 20 6 5.1173 -2.2318 -5.0601 21 6 5.6767 -2.7720 -6.2112 22 6 5.0170 -2.6835 -7.4193 23 6 3.7891 -2.0513 -7.4864 24 6 3.2337 -1.5110 -6.3453 25 6 3.8976 -1.5972 -5.1281 26 6 3.2397 -0.9744 -3.9247 27 6 2.0401 -0.7213 1.2491 28 6 2.9491 -1.9345 1.0426 29 6 1.5081 -2.1305 1.5179 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 0.9936 1.6619 -1.8343 36 1 0.3400 3.9163 -4.2046 37 1 1.3905 -1.1172 -1.8002 38 1 5.6360 -0.3723 -3.0259 39 1 5.8214 -1.6120 -1.7590 40 1 5.7620 -3.3933 -3.3943 41 1 6.9414 -2.1902 -3.9598 42 1 6.6358 -3.2658 -6.1597 43 1 5.4581 -3.1063 -8.3098 44 1 3.2669 -1.9806 -8.4290 45 1 2.2748 -1.0170 -6.3985 46 1 3.3792 0.1061 -3.9576 47 1 2.1733 -1.1994 -3.9413 48 1 2.2377 -0.0850 2.1117 49 1 3.1841 -2.2186 0.0168 50 1 3.7452 -2.0965 1.7694 51 1 1.3561 -2.4213 2.5573 52 1 0.7947 -2.5436 0.8048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495280114.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:36 Heat of formation + Delta-G solvation = 2.717590 kcal Electronic energy + Delta-G solvation = -31339.401529 eV Core-core repulsion = 27496.554555 eV Total energy + Delta-G solvation = -3842.846974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.86848 -40.68248 -38.62752 -36.61908 -36.50262 -34.90868 -33.68700 -32.96571 -31.49793 -30.88949 -29.64522 -27.64381 -25.67588 -25.22504 -24.10794 -23.10035 -23.02695 -22.88286 -21.77594 -20.32267 -20.15870 -19.26274 -18.13547 -17.33747 -17.18328 -16.89426 -16.49937 -16.27392 -15.90556 -15.46449 -15.35496 -15.09499 -15.01592 -14.80880 -14.71958 -14.56147 -14.07207 -13.80634 -13.71842 -13.51223 -13.33414 -13.27103 -13.01130 -12.92844 -12.82577 -12.44983 -12.35784 -12.31412 -12.24068 -12.11942 -11.98805 -11.94798 -11.76228 -11.69931 -11.34566 -11.16859 -11.03051 -10.90627 -10.26592 -9.84974 -9.62766 -9.43105 -8.89170 -7.94693 -5.19179 0.48362 0.50219 1.42226 1.43903 1.51879 1.83390 2.31991 2.54402 2.86961 2.98702 3.38513 3.55468 3.67613 3.68495 3.84824 4.00209 4.02920 4.07006 4.09330 4.17205 4.20209 4.25187 4.34209 4.39708 4.42177 4.42895 4.57637 4.57913 4.60076 4.74092 4.82375 4.86672 4.92250 4.93391 4.94714 4.98369 5.01126 5.10757 5.10938 5.17087 5.23924 5.28659 5.32448 5.34846 5.36357 5.39184 5.47704 5.63118 5.65807 5.78743 5.80998 6.17003 6.28536 6.75627 7.35885 7.49734 8.12055 8.40691 9.28185 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.004560 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.552005 B = 6138.483957 C = 8680.872881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.208 3.792 3 C 0.141 3.859 4 N -0.727 5.727 5 C -0.240 4.240 6 H 0.059 0.941 7 C -0.066 4.066 8 N -0.961 5.961 9 Si 0.963 3.037 10 H -0.293 1.293 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.524 3.476 15 O -0.561 6.561 16 C -0.095 4.095 17 H 0.123 0.877 18 C -0.095 4.095 19 C -0.072 4.072 20 C -0.087 4.087 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.087 4.087 26 C -0.063 4.063 27 C -0.164 4.164 28 C -0.168 4.168 29 C -0.150 4.150 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.010 0.990 34 H 0.030 0.970 35 H 0.377 0.623 36 H 0.250 0.750 37 H 0.405 0.595 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.117 0.883 46 H 0.045 0.955 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.107 0.893 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -20.950 -1.242 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.122 3.878 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.372 4.372 6 H 0.077 0.923 7 C -0.259 4.259 8 N -0.612 5.612 9 Si 0.792 3.208 10 H -0.221 1.221 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.361 5.361 14 C 0.312 3.688 15 O -0.439 6.439 16 C -0.116 4.116 17 H 0.141 0.859 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.087 4.087 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.087 4.087 26 C -0.100 4.100 27 C -0.184 4.184 28 C -0.205 4.205 29 C -0.187 4.187 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.048 0.952 35 H 0.211 0.789 36 H 0.059 0.941 37 H 0.241 0.759 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.155 0.845 45 H 0.136 0.864 46 H 0.063 0.937 47 H 0.104 0.896 48 H 0.116 0.884 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.126 0.874 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.672 -20.360 -0.661 21.146 hybrid contribution -0.377 1.583 -0.784 1.806 sum 5.296 -18.778 -1.445 19.563 Atomic orbital electron populations 1.21917 0.91993 1.03126 1.02673 1.19828 0.94371 0.89732 0.83883 1.21196 0.97615 0.91076 0.88792 1.42272 1.60932 1.09616 1.24191 1.19502 1.24376 0.89219 1.04144 0.92254 1.25335 1.01323 1.01789 0.97466 1.69766 1.40822 1.37222 1.13378 0.85297 0.76801 0.81023 0.77630 1.22074 1.21568 1.19943 1.45970 1.07282 1.56554 1.26268 1.20668 0.82359 0.80319 0.85494 1.90643 1.56833 1.44994 1.51419 1.21317 0.97575 1.01018 0.91679 0.85917 1.21290 0.92907 0.99192 0.99909 1.20497 0.99376 1.00190 0.90763 1.19875 0.94085 0.98208 0.96580 1.21440 1.00849 1.00081 0.91947 1.21401 0.95085 0.99310 0.98585 1.21328 0.96632 0.98452 0.98397 1.21351 1.00627 1.00453 0.92891 1.19590 0.95289 0.99127 0.94675 1.20272 0.99974 0.98673 0.91117 1.22407 1.06385 0.91286 0.98310 1.22921 0.94036 1.01558 1.02001 1.23048 0.96198 0.96511 1.02925 0.89380 0.91090 0.93407 0.97173 0.95246 0.78927 0.94108 0.75945 0.94209 0.90464 0.88344 0.89211 0.83807 0.83630 0.84455 0.86446 0.93688 0.89603 0.88423 0.89415 0.89452 0.87439 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.18 71.98 0.59 -3.42 16 2 C 0.21 6.76 0.55 3.60 0.00 6.76 16 3 C 0.14 6.25 4.83 86.38 0.42 6.67 16 4 N -0.73 -38.10 5.18 -343.45 -1.78 -39.88 16 5 C -0.24 -14.20 9.99 84.04 0.84 -13.36 16 6 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 7 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 8 N -0.96 -58.77 13.06 21.65 0.28 -58.49 16 9 Si 0.96 48.19 29.55 68.60 2.03 50.22 16 10 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 11 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 12 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 13 N -0.71 -21.33 4.13 -422.91 -1.75 -23.07 16 14 C 0.52 17.28 4.16 87.66 0.36 17.64 16 15 O -0.56 -22.96 12.13 -3.06 -0.04 -23.00 16 16 C -0.09 -2.51 2.56 -11.52 -0.03 -2.54 16 17 H 0.12 2.49 8.10 -2.39 -0.02 2.47 16 18 C -0.09 -2.50 4.72 30.61 0.14 -2.36 16 19 C -0.07 -1.41 5.67 29.74 0.17 -1.24 16 20 C -0.09 -2.01 5.74 -19.86 -0.11 -2.12 16 21 C -0.13 -2.42 9.61 22.36 0.21 -2.20 16 22 C -0.13 -2.35 10.05 22.20 0.22 -2.13 16 23 C -0.13 -2.78 10.05 22.20 0.22 -2.56 16 24 C -0.14 -3.49 9.61 22.36 0.21 -3.27 16 25 C -0.09 -2.32 5.74 -19.86 -0.11 -2.43 16 26 C -0.06 -1.84 4.81 29.74 0.14 -1.70 16 27 C -0.16 -4.59 4.87 -10.79 -0.05 -4.65 16 28 C -0.17 -4.23 8.53 30.59 0.26 -3.97 16 29 C -0.15 -3.03 9.68 30.59 0.30 -2.74 16 30 H 0.09 1.88 6.89 -2.39 -0.02 1.86 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.63 6.86 -2.39 -0.02 1.61 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.03 1.50 5.72 -2.39 -0.01 1.48 16 35 H 0.38 20.12 6.35 -92.71 -0.59 19.53 16 36 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.40 10.27 7.98 -92.71 -0.74 9.53 16 38 H 0.04 1.30 8.10 -2.38 -0.02 1.28 16 39 H 0.08 2.03 7.80 -2.39 -0.02 2.01 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 42 H 0.14 1.97 8.05 -2.91 -0.02 1.95 16 43 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.12 3.03 8.05 -2.91 -0.02 3.01 16 46 H 0.04 1.73 8.11 -2.39 -0.02 1.71 16 47 H 0.09 2.28 7.72 -2.39 -0.02 2.27 16 48 H 0.10 2.89 8.06 -2.39 -0.02 2.87 16 49 H 0.09 2.28 5.17 -2.39 -0.01 2.27 16 50 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 51 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 52 H 0.10 1.85 7.17 -2.39 -0.02 1.84 16 Total: -1.00 -73.11 401.42 2.61 -70.50 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: -0.40 Total: 46.80 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 4.26 Total: -23.08 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -3.24 Total: -121.44 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.04 Total: -23.00 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -73.11 2.61 -70.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495280114.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.218 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds