Wall clock time and date at job start Wed Apr 1 2020 01:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.52997 * 109.47316 * 120.00132 * 2 1 3 5 5 C 1.52995 * 109.47565 * 174.84581 * 4 2 1 6 6 H 1.08999 * 109.47120 * 54.19976 * 5 4 2 7 7 C 1.53004 * 109.46894 * 294.20149 * 5 4 2 8 8 N 1.46495 * 109.47366 * 184.99941 * 7 5 4 9 9 C 1.36940 * 120.00347 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99618 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00167 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99911 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00132 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46964 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47147 * 119.99832 * 13 11 9 16 16 H 1.48496 * 109.46920 * 240.00190 * 13 11 9 17 17 N 1.46503 * 109.47238 * 174.20515 * 5 4 2 18 18 C 1.34765 * 119.99770 * 272.15445 * 17 5 4 19 19 O 1.21283 * 120.00580 * 5.11116 * 18 17 5 20 20 C 1.50705 * 120.00194 * 185.10650 * 18 17 5 21 21 H 1.09006 * 115.53711 * 325.59194 * 20 18 17 22 22 C 1.53040 * 117.48581 * 180.02562 * 20 18 17 23 23 H 1.08997 * 119.41569 * 139.49666 * 22 20 18 24 24 C 1.53446 * 118.57745 * 343.84610 * 22 20 18 25 25 C 1.50969 * 107.03453 * 297.01936 * 24 22 20 26 26 C 1.38786 * 129.71742 * 179.64054 * 25 24 22 27 27 C 1.38019 * 120.30528 * 180.02562 * 26 25 24 28 28 C 1.38247 * 119.88170 * 359.97438 * 27 26 25 29 29 C 1.38014 * 119.88333 * 359.97438 * 28 27 26 30 30 C 1.37803 * 110.46191 * 359.68813 * 25 24 22 31 31 C 1.50938 * 110.48204 * 359.92654 * 30 25 24 32 32 H 1.09003 * 117.44558 * 220.72984 * 31 30 25 33 33 H 1.08999 * 109.47376 * 300.00059 * 1 2 3 34 34 H 1.09002 * 109.47291 * 60.00314 * 1 2 3 35 35 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 36 36 H 1.08999 * 109.47376 * 239.99941 * 2 1 3 37 37 H 1.09004 * 109.47025 * 305.54541 * 3 2 1 38 38 H 1.09006 * 109.46884 * 65.53872 * 3 2 1 39 39 H 1.09001 * 109.47433 * 185.54093 * 3 2 1 40 40 H 1.09002 * 109.47060 * 54.84069 * 4 2 1 41 41 H 1.09007 * 109.47036 * 294.84709 * 4 2 1 42 42 H 1.09002 * 109.47297 * 305.00389 * 7 5 4 43 43 H 1.09007 * 109.47250 * 64.99741 * 7 5 4 44 44 H 0.97001 * 119.99962 * 0.02562 * 8 7 5 45 45 H 0.96999 * 119.99384 * 179.97438 * 12 11 9 46 46 H 0.97002 * 120.00031 * 92.16061 * 17 5 4 47 47 H 1.08997 * 109.92029 * 56.37263 * 24 22 20 48 48 H 1.09004 * 109.91693 * 177.47433 * 24 22 20 49 49 H 1.07996 * 119.84668 * 0.05383 * 26 25 24 50 50 H 1.08000 * 120.05473 * 179.97438 * 27 26 25 51 51 H 1.07999 * 120.05297 * 179.97438 * 28 27 26 52 52 H 1.08001 * 119.83890 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5645 -0.8345 1.1861 6 1 3.9963 0.1549 1.0353 7 6 3.9604 -1.7466 0.0232 8 7 5.4110 -1.9511 0.0350 9 6 5.9994 -2.7375 -0.9193 10 1 5.3939 -3.2073 -1.6802 11 6 7.3739 -2.9308 -0.9084 12 7 8.1117 -2.3586 0.0193 13 14 8.1765 -4.0042 -2.2096 14 1 7.1356 -4.5275 -3.1306 15 1 9.1580 -3.1985 -2.9795 16 1 8.8738 -5.1394 -1.5537 17 7 4.0646 -1.3994 2.4419 18 6 4.3516 -0.5878 3.4788 19 8 4.1093 0.5984 3.4057 20 6 4.9737 -1.1540 4.7292 21 1 4.6553 -2.1613 4.9979 22 6 5.2751 -0.1807 5.8712 23 1 5.0808 -0.4854 6.8995 24 6 5.2914 1.3235 5.5686 25 6 6.4077 1.5639 4.5810 26 6 6.8292 2.7465 3.9896 27 6 7.8851 2.7430 3.1008 28 6 8.5268 1.5565 2.7982 29 6 8.1095 0.3797 3.3863 30 6 7.0465 0.3808 4.2787 31 6 6.4211 -0.7655 5.0357 32 1 7.0915 -1.5155 5.4555 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8934 -0.5138 -0.8900 37 1 1.5978 1.9842 -0.8362 38 1 1.7599 1.9269 0.9355 39 1 3.1255 1.4441 -0.0992 40 1 1.6032 -1.7188 1.2966 41 1 1.7540 -0.1569 2.1368 42 1 3.4571 -2.7078 0.1276 43 1 3.6664 -1.2830 -0.9185 44 1 5.9547 -1.5294 0.7187 45 1 9.0722 -2.4941 0.0271 46 1 4.1892 -2.3576 2.5271 47 1 4.3388 1.6251 5.1332 48 1 5.4750 1.8846 6.4849 49 1 6.3289 3.6739 4.2262 50 1 8.2095 3.6656 2.6426 51 1 9.3531 1.5505 2.1028 52 1 8.6115 -0.5468 3.1497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496296302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:58 Heat of formation + Delta-G solvation = 18.785019 kcal Electronic energy + Delta-G solvation = -31316.734717 eV Core-core repulsion = 27474.584479 eV Total energy + Delta-G solvation = -3842.150238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.02115 -38.94653 -37.33703 -36.16497 -34.75637 -33.42053 -31.56785 -30.94913 -30.19525 -29.02629 -27.38438 -26.99323 -25.52381 -24.48420 -22.74239 -22.26213 -21.23081 -20.67726 -20.14277 -19.55248 -19.24820 -17.15405 -16.90550 -15.80657 -15.76802 -15.46621 -15.12792 -14.61619 -14.49267 -14.40198 -14.13851 -13.69462 -13.44602 -13.35956 -13.19532 -13.05683 -12.77857 -12.68368 -12.35156 -12.24395 -12.14435 -11.96110 -11.83342 -11.62755 -11.58635 -11.06806 -10.93907 -10.87583 -10.75688 -10.73127 -10.45898 -10.40869 -10.38291 -10.19807 -10.09976 -9.94869 -9.72678 -9.10313 -8.87753 -8.54257 -8.29574 -8.07370 -6.91870 -5.75712 -3.04698 1.69208 1.85779 2.89352 3.41683 3.47952 3.49695 3.50854 3.81726 4.18716 4.57449 4.58878 4.69745 4.95191 5.04180 5.06240 5.07895 5.13216 5.26044 5.34061 5.42301 5.46959 5.49815 5.57013 5.58310 5.63185 5.75835 5.78613 5.83715 5.85336 5.87977 5.95665 5.96932 6.04026 6.06969 6.15266 6.16676 6.21497 6.25381 6.27238 6.39405 6.43267 6.50118 6.55001 6.58250 6.64641 6.78951 6.84925 6.97394 7.05109 7.07861 7.42260 7.70033 8.00565 8.41779 8.70634 9.54014 10.11022 10.47133 11.46008 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.006880 B = 0.005238 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4068.612362 B = 5343.912954 C = 7845.075207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.118 4.118 5 C 0.139 3.861 6 H 0.089 0.911 7 C 0.144 3.856 8 N -0.729 5.729 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.010 4.010 12 N -0.926 5.926 13 Si 0.903 3.097 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.709 5.709 18 C 0.544 3.456 19 O -0.535 6.535 20 C -0.157 4.157 21 H 0.128 0.872 22 C -0.129 4.129 23 H 0.125 0.875 24 C -0.057 4.057 25 C -0.060 4.060 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.123 4.123 29 C -0.077 4.077 30 C -0.083 4.083 31 C -0.086 4.086 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.033 0.967 44 H 0.387 0.613 45 H 0.253 0.747 46 H 0.401 0.599 47 H 0.106 0.894 48 H 0.071 0.929 49 H 0.112 0.888 50 H 0.117 0.883 51 H 0.121 0.879 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 6.201 11.079 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.157 4.157 5 C 0.034 3.966 6 H 0.107 0.893 7 C 0.016 3.984 8 N -0.374 5.374 9 C -0.372 4.372 10 H 0.087 0.913 11 C -0.207 4.207 12 N -0.574 5.574 13 Si 0.735 3.265 14 H -0.207 1.207 15 H -0.219 1.219 16 H -0.220 1.220 17 N -0.358 5.358 18 C 0.330 3.670 19 O -0.413 6.413 20 C -0.178 4.178 21 H 0.146 0.854 22 C -0.147 4.147 23 H 0.143 0.857 24 C -0.093 4.093 25 C -0.060 4.060 26 C -0.136 4.136 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.095 4.095 30 C -0.083 4.083 31 C -0.104 4.104 32 H 0.140 0.860 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.221 0.779 45 H 0.063 0.937 46 H 0.235 0.765 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.131 0.869 50 H 0.135 0.865 51 H 0.139 0.861 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.783 6.959 10.866 15.609 hybrid contribution 0.844 -1.201 -0.699 1.626 sum -7.939 5.758 10.166 14.126 Atomic orbital electron populations 1.21820 0.95641 1.01332 1.01307 1.21125 0.95174 0.96645 0.98625 1.21850 1.01613 0.95695 1.01150 1.21964 0.95374 1.00286 0.98052 1.21274 0.92875 0.99054 0.83356 0.89337 1.21008 0.87441 0.95501 0.94454 1.42347 1.00580 1.59288 1.35190 1.19238 0.90519 1.21621 1.05792 0.91302 1.24709 0.96253 1.00900 0.98818 1.69689 1.04879 1.47707 1.35119 0.86176 0.79340 0.79895 0.81111 1.20658 1.21947 1.21957 1.45903 1.66240 1.10720 1.12987 1.19534 0.77445 0.86321 0.83687 1.90611 1.53399 1.15550 1.81719 1.22359 0.98919 1.00549 0.95989 0.85367 1.22874 1.02588 0.93651 0.95589 0.85710 1.20382 0.99037 0.93057 0.96839 1.20234 0.94982 0.93260 0.97556 1.20459 0.97828 0.96889 0.98421 1.20956 0.96448 0.98008 0.97976 1.20962 1.00760 0.92390 0.99986 1.20762 0.95692 0.98593 0.94415 1.19505 0.96963 0.93253 0.98606 1.21363 0.88950 0.99214 1.00897 0.85985 0.93045 0.92963 0.92931 0.90554 0.93260 0.92840 0.92192 0.92117 0.91747 0.96134 0.94940 0.77884 0.93723 0.76475 0.87567 0.91079 0.86944 0.86493 0.86085 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.10 -1.27 2.80 -90.62 -0.25 -1.52 16 3 C -0.15 -1.98 8.82 37.16 0.33 -1.66 16 4 C -0.12 -1.67 4.46 -26.74 -0.12 -1.79 16 5 C 0.14 2.37 2.08 -67.93 -0.14 2.23 16 6 H 0.09 1.76 5.86 -51.93 -0.30 1.45 16 7 C 0.14 2.84 5.49 -4.04 -0.02 2.82 16 8 N -0.73 -18.04 5.43 -59.91 -0.33 -18.37 16 9 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 10 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 12 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 13 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 17 N -0.71 -11.63 4.49 -53.81 -0.24 -11.87 16 18 C 0.54 9.02 6.90 -10.99 -0.08 8.94 16 19 O -0.54 -9.99 12.21 5.55 0.07 -9.92 16 20 C -0.16 -2.14 6.18 -91.77 -0.57 -2.71 16 21 H 0.13 1.40 8.14 -51.93 -0.42 0.97 16 22 C -0.13 -1.58 7.06 -90.16 -0.64 -2.22 16 23 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 24 C -0.06 -0.78 5.77 -27.52 -0.16 -0.93 16 25 C -0.06 -0.97 4.87 -104.45 -0.51 -1.47 16 26 C -0.12 -1.83 10.04 -39.46 -0.40 -2.23 16 27 C -0.12 -1.80 10.05 -39.66 -0.40 -2.20 16 28 C -0.12 -2.09 10.04 -39.66 -0.40 -2.49 16 29 C -0.08 -1.38 10.04 -39.46 -0.40 -1.78 16 30 C -0.08 -1.40 5.27 -104.46 -0.55 -1.95 16 31 C -0.09 -1.22 6.85 -91.46 -0.63 -1.85 16 32 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.06 6.48 -51.93 -0.34 0.73 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.93 6.72 -51.93 -0.35 0.58 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.03 0.65 6.72 -51.93 -0.35 0.30 16 44 H 0.39 10.29 7.33 -40.82 -0.30 9.99 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.40 6.28 8.63 -40.82 -0.35 5.93 16 47 H 0.11 1.62 6.21 -51.93 -0.32 1.29 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 50 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 51 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 52 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 411.50 15.07 6.20 6.20 Total: -1.00 -31.25 411.50 -12.05 -43.30 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -8.62 Total: 19.11 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -4.83 Total: -19.18 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.16 Total: -56.64 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.25 -12.05 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496296302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.080 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds